Publications 2022

Andrew J. Jasonowicz et al.
Generation of a chromosome‐level genome assembly for Pacific halibut ( Hippoglossus stenolepis ) and characterization of its sex‐determining genomic region
Molecular Ecology Resources 2022
doi: 10.1111/1755-0998.13641

Victoria Mesa et al.
Core-, pan- and accessory genome analyses of Clostridium neonatale: insights into genetic diversity
Microbial Genomics 2022, vol. 8, issue 5
doi: 10.1099/mgen.0.000813

Caroline Vernette et al.
The Ocean Gene Atlas v2.0: online exploration of the biogeography and phylogeny of plankton genes
Nucleic Acids Research 2022
doi: 10.1093/nar/gkac420

Isabel Paiva et al.
Caffeine intake exerts dual genome-wide effects on hippocampal metabolism and learning-dependent transcription
Journal of Clinical Investigation 2022, vol. 132, issue 12
doi: 10.1172/jci149371

Anne Soisig Steunou et al.
New insights into the mechanism of iron transport through the bacterial Ftr system present in pathogens
The FEBS Journal 2022
doi: 10.1111/febs.16476

Rémi Tournebize et al.
Ecological and genomic vulnerability to climate change across native populations of Robusta coffee ( Coffea canephora )
Global Change Biology 2022, vol. 28, issue 13
doi: 10.1111/gcb.16191

Quentin Piet et al.
A chromosome-level, haplotype-phased Vanilla planifolia genome highlights the challenge of partial endoreplication for accurate whole-genome assembly
Plant Communications 2022, vol. 3, issue 5
doi: 10.1016/j.xplc.2022.100330

Célia Carbonne et al.
Metatranscriptomics of cheese microbial communities: Efficiency of RNA extraction from various cheese types and of mRNA enrichment
International Journal of Food Microbiology 2022, vol. 373
doi: 10.1016/j.ijfoodmicro.2022.109701

Jean-Marc Aury et al.
Long-read and chromosome-scale assembly of the hexaploid wheat genome achieves high resolution for research and breeding
GigaScience 2022, vol. 11
doi: 10.1093/gigascience/giac034

Stefano Gnan et al.
Kronos scRT: a uniform framework for single-cell replication timing analysis
Nature Communications 2022, vol. 13, issue 1
doi: 10.1038/s41467-022-30043-x

Hong Joo Kim et al.
Heterozygous frameshift variants in HNRNPA2B1 cause early-onset oculopharyngeal muscular dystrophy
Nature Communications 2022, vol. 13, issue 1
doi: 10.1038/s41467-022-30015-1

Aurélie A G Gabriel et al.
Genetic Analysis of Lung Cancer and the Germline Impact on Somatic Mutation Burden
JNCI: Journal of the National Cancer Institute 2022, vol. 114, issue 8
doi: 10.1093/jnci/djac087

Aurélie A G Gabriel et al.
Genetic Analysis of Lung Cancer and the Germline Impact on Somatic Mutation Burden
JNCI: Journal of the National Cancer Institute 2022
doi: 10.1093/jnci/djac087

S. Cohen et al.
A POLD3/BLM dependent pathway handles DSBs in transcribed chromatin upon excessive RNA:DNA hybrid accumulation
Nature Communications 2022, vol. 13, issue 1
doi: 10.1038/s41467-022-29629-2

Laura Thirouard et al.
Identification of a Crosstalk among TGR5, GLIS2, and TP53 Signaling Pathways in the Control of Undifferentiated Germ Cell Homeostasis and Chemoresistance
Advanced Science 2022
doi: 10.1002/advs.202200626

Ming Wen et al.
An ancient truncated duplication of the anti‐Müllerian hormone receptor type 2 gene is a potential conserved master sex determinant in the Pangasiidae catfish family
Molecular Ecology Resources 2022, vol. 22, issue 6
doi: 10.1111/1755-0998.13620

Ming Wen et al.
An ancient truncated duplication of the anti‐Müllerian hormone receptor type 2 gene is a potential conserved master sex determinant in the Pangasiidae catfish family
Molecular Ecology Resources 2022
doi: 10.1111/1755-0998.13620

Marta Lourenço et al.
The gut environment regulates bacterial gene expression which modulates susceptibility to bacteriophage infection
Cell Host & Microbe 2022, vol. 30, issue 4
doi: 10.1016/j.chom.2022.03.014

Justine Marsolier et al.
H3K27me3 conditions chemotolerance in triple-negative breast cancer
Nature Genetics 2022, vol. 54, issue 4
doi: 10.1038/s41588-022-01047-6

Mathilde Dura et al.
DNMT3A-dependent DNA methylation is required for spermatogonial stem cells to commit to spermatogenesis
Nature Genetics 2022, vol. 54, issue 4
doi: 10.1038/s41588-022-01040-z

Juliette Mainguené et al.
Human papilloma virus integration sites and genomic signatures in head and neck squamous cell carcinoma
Molecular Oncology 2022, vol. 16, issue 16
doi: 10.1002/1878-0261.13219

Ahmed A. Zayed et al.
Cryptic and abundant marine viruses at the evolutionary origins of Earth’s RNA virome
Science 2022, vol. 376, issue 6589
doi: 10.1126/science.abm5847

Olivia Bonduelle et al.
Dichotomy in Neutralizing Antibody Induction to Peptide-Conjugated Vaccine in Squalene Emulsion Contrast With Aluminum Hydroxide Formulation
Frontiers in Immunology 2022, vol. 13
doi: 10.3389/fimmu.2022.848571

Antoine Régimbeau et al.
Contribution of genome‐scale metabolic modelling to niche theory
Ecology Letters 2022
doi: 10.1111/ele.13954

Helit Cohen et al.
Intracellular Salmonella Paratyphi A is motile and differs in the expression of flagella-chemotaxis, SPI-1 and carbon utilization pathways in comparison to intracellular S. Typhimurium
PLOS Pathogens 2022, vol. 18, issue 4
doi: 10.1371/journal.ppat.1010425

Audrey Laurent et al.
TET2-mediated epigenetic reprogramming of breast cancer cells impairs lysosome biogenesis
Life Science Alliance 2022, vol. 5, issue 7
doi: 10.26508/lsa.202101283

Rodrigo Nalio Ramos et al.
Tissue-resident FOLR2+ macrophages associate with CD8+ T cell infiltration in human breast cancer
Cell 2022, vol. 185, issue 7
doi: 10.1016/j.cell.2022.02.021

Hala Al Adhami et al.
A comparative methylome analysis reveals conservation and divergence of DNA methylation patterns and functions in vertebrates
BMC Biology 2022, vol. 20, issue 1
doi: 10.1186/s12915-022-01270-x

Rachel A. DeWeerd et al.
Prospectively defined patterns of APOBEC3A mutagenesis are prevalent in human cancers
Cell Reports 2022, vol. 38, issue 12
doi: 10.1016/j.celrep.2022.110555

Lucas Morinière et al.
A Comprehensive Overview of the Genes and Functions Required for Lettuce Infection by the Hemibiotrophic Phytopathogen Xanthomonas hortorum pv. vitians
mSystems 2022, vol. 7, issue 2
doi: 10.1128/msystems.01290-21