Publications 2020

Mathieu Rousseau-Gueutin et al.
Long-read assembly of the Brassica napus reference genome Darmor-bzh
GigaScience 2020, vol. 9, issue 12
doi: 10.1093/gigascience/giaa137

Aurélie Pirayre et al.
Glucose-lactose mixture feeds in industry-like conditions: a gene regulatory network analysis on the hyperproducing Trichoderma reesei strain Rut-C30
BMC Genomics 2020, vol. 21, issue 1
doi: 10.1186/s12864-020-07281-8

Maud Kamal et al.
Human papilloma virus (HPV) integration signature in Cervical Cancer: identification of MACROD2 gene as HPV hot spot integration site
British Journal of Cancer 2020
doi: 10.1038/s41416-020-01153-4

Dimitra Sakoula et al.
Enrichment and physiological characterization of a novel comammox Nitrospira indicates ammonium inhibition of complete nitrification
The ISME Journal 2020
doi: 10.1038/s41396-020-00827-4

Julien Boutte et al.
Genome Size Variation and Comparative Genomics Reveal Intraspecific Diversity in Brassica rapa
Frontiers in Plant Science 2020, vol. 11
doi: 10.3389/fpls.2020.577536

Olivier Petitjean et al.
Genome-Wide CRISPR-Cas9 Screen Reveals the Importance of the Heparan Sulfate Pathway and the Conserved Oligomeric Golgi Complex for Synthetic Double-Stranded RNA Uptake and Sindbis Virus Infection
mSphere 2020, vol. 5, issue 6
doi: 10.1128/msphere.00914-20

Agnès Barbance et al.
Genetic Analysis of Citrobacter sp.86 Reveals Involvement of Corrinoids in Chlordecone and Lindane Biotransformations
Frontiers in Microbiology 2020, vol. 11
doi: 10.3389/fmicb.2020.590061

Florence Vorspan et al.
Translational study of the whole transcriptome in rats and genetic polymorphisms in humans identifies LRP1B and VPS13A as key genes involved in tolerance to cocaine-induced motor disturbances
Translational Psychiatry 2020, vol. 10, issue 1
doi: 10.1038/s41398-020-01050-7

José-Manuel Rodriguez-Vargas et al.
Parp3 promotes astrocytic differentiation through a tight regulation of Nox4-induced ROS and mTorc2 activation
Cell Death & Disease 2020, vol. 11, issue 11
doi: 10.1038/s41419-020-03167-5

Benjamin Istace et al.
BiSCoT: improving large eukaryotic genome assemblies with optical maps
PeerJ 2020, vol. 8
doi: 10.7717/peerj.10150

Christophe Djemiel et al.
BIOCOM-PIPE: a new user-friendly metabarcoding pipeline for the characterization of microbial diversity from 16S, 18S and 23S rRNA gene amplicons
BMC Bioinformatics 2020, vol. 21, issue 1
doi: 10.1186/s12859-020-03829-3

Sihem Guesmi et al.
Draft genome sequence of Promicromonospora panici sp. nov., a novel ionizing-radiation-resistant actinobacterium isolated from roots of the desert plant Panicum turgidum
Extremophiles 2020
doi: 10.1007/s00792-020-01207-8

Guillaume Martin et al.
Chromosome reciprocal translocations have accompanied subspecies evolution in bananas
The Plant Journal 2020, vol. 104, issue 6
doi: 10.1111/tpj.15031

Kelle C. Freel et al.
Effect of arsenite and growth in biofilm conditions on the evolution of Thiomonas sp. CB2
Microbial Genomics 2020, vol. 6, issue 10
doi: 10.1099/mgen.0.000447

Céline Osinski et al.
Type 2 diabetes is associated with impaired jejunal enteroendocrine GLP-1 cell lineage in human obesity
International Journal of Obesity 2020, vol. 45, issue 1
doi: 10.1038/s41366-020-00694-1

Quentin Carradec et al.
A framework for in situ molecular characterization of coral holobionts using nanopore sequencing
Scientific Reports 2020, vol. 10, issue 1
doi: 10.1038/s41598-020-72589-0

Lydie Kerdraon et al.
Impact of a resistance gene against a fungal pathogen on the plant host residue microbiome: The case of the Leptosphaeria maculans–Brassica napus pathosystem
Molecular Plant Pathology 2020, vol. 21, issue 12
doi: 10.1111/mpp.12994

Sara Castagnola et al.
Agonist-induced functional analysis and cell sorting associated with single-cell transcriptomics characterizes cell subtypes in normal and pathological brain
Genome Research 2020, vol. 30, issue 11
doi: 10.1101/gr.262717.120

Eva M. Seipelt et al.
Prenatal maternal vitamin D deficiency sex‐dependently programs adipose tissue metabolism and energy homeostasis in offspring
The FASEB Journal 2020, vol. 34, issue 11
doi: 10.1096/fj.201902924rr

Laure Guenin-Macé et al.
Dysregulation of tryptophan catabolism at the host-skin microbiota interface in hidradenitis suppurativa
JCI Insight 2020, vol. 5, issue 20
doi: 10.1172/jci.insight.140598

Sophie Loeillet et al.
Trajectory and uniqueness of mutational signatures in yeast mutators
Proceedings of the National Academy of Sciences 2020, vol. 117, issue 40
doi: 10.1073/pnas.2011332117

Mickael Meyer et al.
Profiling the Non-genetic Origins of Cancer Drug Resistance with a Single-Cell Functional Genomics Approach Using Predictive Cell Dynamics
Cell Systems 2020, vol. 11, issue 4
doi: 10.1016/j.cels.2020.08.019

Aleksandra S. Chikina et al.
Macrophages Maintain Epithelium Integrity by Limiting Fungal Product Absorption
Cell 2020, vol. 183, issue 2
doi: 10.1016/j.cell.2020.08.048

Ngan Thi Phan et al.
Genome structure and content of the rice root‐knot nematode ( Meloidogyne graminicola )
Ecology and Evolution 2020, vol. 10, issue 20
doi: 10.1002/ece3.6680

Philippe Cubry et al.
Genome Wide Association Study Pinpoints Key Agronomic QTLs in African Rice Oryza glaberrima
Rice 2020, vol. 13, issue 1
doi: 10.1186/s12284-020-00424-1

Karima Drareni et al.
Adipocyte Reprogramming by the Transcriptional Coregulator GPS2 Impacts Beta Cell Insulin Secretion
Cell Reports 2020, vol. 32, issue 11
doi: 10.1016/j.celrep.2020.108141

Dominique Arrouays et al.
Impacts of national scale digital soil mapping programs in France
Geoderma Regional 2020, vol. 23
doi: 10.1016/j.geodrs.2020.e00337

Supawich Morkmued et al.
Deficiency of the SMOC2 matricellular protein impairs bone healing and produces age-dependent bone loss
Scientific Reports 2020, vol. 10, issue 1
doi: 10.1038/s41598-020-71749-6

Thomas Baranek et al.
High Dimensional Single-Cell Analysis Reveals iNKT Cell Developmental Trajectories and Effector Fate Decision
Cell Reports 2020, vol. 32, issue 10
doi: 10.1016/j.celrep.2020.108116

Hisashi Endo et al.
Biogeography of marine giant viruses reveals their interplay with eukaryotes and ecological functions
Nature Ecology & Evolution 2020, vol. 4, issue 12
doi: 10.1038/s41559-020-01288-w