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  1. Bioinformatics tools

Expertise

Bioinformatics tools

Faced with the constant renewal of sequencing technologies, platforms are constantly developing bioinformatics tools to facilitate the management, quality control and analysis of sequencing data. Codes are most often available on Git-Hub.

Rubriques associées

  • Data managment and processing

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  • Technological expertises
    • The catalog of expertise
    • Whole Genome
      • « Short read » sequencing through « clustering »
      • « Short read » sequencing by DNB
      • « Mate Pair » Sequencing
      • « Long Read » Sequencing
      • « Long Reads ONT » Sequencing
      • « Synthetic Long Read » Sequencing
      • Optical Mapping
      • Tn-Seq
      • Omni-C
      • Pore-C
    • Targeted genome
      • AmpliSeq (targeted regions, exome, SSRs)
      • RAD seq
      • Adaptive sampling
    • Transcriptome
      • Ribo-Seq
    • Spatial transcriptomics
      • Transcriptome-wide or NGS-based approaches
      • Targeted spatial omics methods using RNA probes
  • Technological expertises (continue)
    • Regulome
      • Small RNA Sequencing
      • TSS seq
      • ATAC seq
      • FAIRE seq
      • MNase seq
      • DNase seq
      • 3C, 4C and 5C-seq
      • HiC-seq
      • CHIP seq
      • CLIP seq
      • CUT & RUN vs CUT & Tag
      • MeDIP
      • BiSeq
      • Methyl seq
      • EM-seq
      • TAPS/TAPSβ
      • Methylation of native DNA and RNA
    • Metagenomics
      • Metagenomics using targeted amplicon/ barcoding/metabarcoding
      • Shotgun metagenomics
    • Single Cell
      • scDNA-seq
      • scRNAseq
      • ScNaUmi-seq
    • Genotyping (DNA, RNA, CpG arrays)
  • Bioinformatics tools
    • Data managment and processing
      • EOULSAN
      • AOZAN
      • ToulligQC
      • AsaruSim
    • Data analysis
      • seqMINER
      • BioConvert
  • Databases
    • FREX : THE FRENCH EXOME PROJECT DATABASE
    • OGA V2.0 : Ocean Gene Atlas v2.0
  • Technological watch
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