Publications 2016

Sapriel G. et al.
Genome-wide mosaicism within Mycobacterium abscessus: evolutionary and epidemiological implications
BMC Genomics. (2016) 17:118
doi: 10.1186/s12864-016-2448-1

Zhang SD. et al.
Genomic and physiological analysis reveals versatile metabolic capacity of deep-sea Photobacterium phosphoreum ANT-2200.
Extremophiles. (2016) 20(3):301-10
doi: 10.1007/s00792-016-0822-1

Tenaillon O. et al.
Tempo and mode of genome evolution in a 50,000-generation experiment
Nature. (2016) 536(7615):165-70

Marchetti M. et al.
Experimental evolution of rhizobia may lead to either extra- or intracellular symbiotic adaptation depending on the selection regime
Mol Ecol. (2016) Oct 22
doi: 10.1111/mec.13895

Troupin C. et al.
Large-Scale Phylogenomic Analysis Reveals the Complex Evolutionary History of Rabies Virus in Multiple Carnivore Hosts
PLoS Pathog. (2016) 12(12):e1006041
doi: 10.1371/journal.ppat.1006041

Letaief R. et al.
Identification and characterization of copy number variations in cattle
Journal of Animal Science. (2016) 183-183
doi: 10.2527/jas.94 supplement4183a

Tabet R. et al.
Fragile X Mental Retardation Protein (FMRP) controls diacylglycerol kinase activity in neurons
Proc Natl Acad Sci USA. (2016) 113(26):E3619-28
doi: 10.1073/pnas.1522631113

Madoui, M.A. et al.
MaGuS: a tool for quality assessment and scaffolding of genome assemblies with Whole Genome Profiling (TM) Data
BMC Bioinformatics. (2016) 17: p. 115

Doublet V. et al.
Brain transcriptomes of honey bees (Apis mellifera) experimentally infected by two pathogens: Black queen cell virus and Nosema ceranae
Genom Data. (2016) 10:79-82

Laureau R. et al.
Extensive Recombination of a Yeast Diploid Hybrid through Meiotic Reversion
PLoS Genetics. (2016) 12(2):e1005781
doi: 10.1371/journal.pgen.1005781

Lebrigand K. et al.
Comparative Genomic Analysis of Drechmeria coniospora Reveals Core and Specific Genetic Requirements for Fungal Endoparasitism of Nematodes
PLoS Genet. (2016) 12(5):e1006017
doi: 10.1371/journal.pgen.1006017

Dupont C. et al.
A new piperidinol derivative targeting mycolic acid transport in Mycobacterium abscessus
Mol Microbiol. (2016) 101(3):515-29
doi: 10.1111/mmi.13406

Le Gac M. et al.
Evolutionary processes and cellular functions underlying divergence in Alexandrium minutum
Mol Ecol. (2016) 25(20):5129-5143
doi: 10.1111/mec.13815

Roux PF. et al.
The Extent of mRNA Editing Is Limited in Chicken Liver and Adipose, but Impacted by Tissular Context, Genotype, Age, and Feeding as Exemplified with a Conserved Edited Site in COG3
G3 (Genes,Genomes,Genetics). (2015) 6(2):321-35
doi: 10.1534/g3.115.022251

Niewiadomska-Cimicka A. et al.
Genome-wide Analysis of RARbeta Transcriptional Targets in Mouse Striatum Links Retinoic Acid Signaling with Huntington's Disease and Other Neurodegenerative Disorders
Mol Neurobiol. (2016) [Epub ahead of print] PubMed PMID: 27405468

Holmes, A. et al.
Mechanistic signatures of HPV insertions in cervical carcinomas
Npj Genomic Medicine. (2016) 16004
doi: 10.1038/npjgenmed.2016.4

Martin, G. et al.
Improvement of the banana "Musa acuminata" reference sequence using NGS data and semi-automated bioinformatics methods
BMC Genomics. (2016) 17: p. 243

Picard MA. et al.
Sex-Biased Transcriptome of Schistosoma mansoni: Host-Parasite Interaction, Genetic Determinants and Epigenetic Regulators Are Associated with Sexual Differentiation
PLoS Negl Trop Dis. (2016) 10:e0004930

Garot A. et al.
Sequential activation and distinct functions for distal and proximal modules within the IgH 3' regulatory region
Proc Natl Acad Sci U S A. (2016) pii: 201514090
doi: 10.1073/pnas.1514090113

Lassalle S. et al.
MicroRNA-375/SEC23A as biomarkers of the in vitro efficacy of vandetanib
Oncotarget. (2016) 24.7(21):30461-78
doi: 10.18632/oncotarget.8458

Chaintreuil C. et al.
A gene-based map of the Nod factor-independent Aeschynomene evenia sheds new light on the evolution of nodulation and legume genomes
DNA Res. (2016) 23:365-76
doi: 10.1093/dnares/dsw020

Aubé J. et al.
The impact of long-term hydrocarbon exposure on the structure, activity, and biogeochemical functioning of microbial mats
Mar Pollut Bull. (2016) 111(1-2):115-25
doi: 10.1016/j.marpolbul.2016.07.023

Eckenfelder A. et al.
Argonaute proteins regulate HIV-1 multiply spliced RNA and viral production in a Dicer independent manner
Nucleic Acids Res. (2016)
doi: 10.1093/nar/gkw1289

Gies V. et al.
B cells differentiate in Human thymus and express AIRE
The Journal of Allergy and Clinical Immunology. (2016) pii: S0091-6749(16)31295-7
doi: 10.1016/j.jaci.2016.09.044

Jackson, R. et al.
Functional variants of human papillomavirus type 16 demonstrate host genome integration and transcriptional alterations corresponding to their unique cancer epidemiology
BMC Genomics. (2016) Nov 2.17(1):851. Erratum in: BMC Genomics. 2016 Dec 12.17 (1):1018

Mathe-Hubert, H. et al.
Comparative venomics of Psyttalia lounsburyi and P-concolor, two olive fruit fly parasitoids: a hypothetical role for a GH1 beta-glucosidase
Scientific Reports. (2016) 6: p. e35873

Pontvianne F. et al.
Identification of Nucleolus-Associated Chromatin Domains Reveals a Role for the Nucleolus in 3D Organization of the A. thaliana Genome
Cell Rep. (2016)16:1574-87

Glaser P. et al.
Demography and Intercontinental Spread of the USA300 Community-Acquired Methicillin-Resistant Staphylococcus aureus Lineage
MBio. (2016) 7(1):e02183-15
doi: 10.1128/mBio.02183-15

Merhej J. et al.
A Network of Paralogous Stress Response Transcription Factors in the Human Pathogen Candida glabrata
Front Microbiol. (2016) 7:645
doi: 10.3389/fmicb.2016.00645

Boritsch EC. et al.
Key experimental evidence of chromosomal DNA transfer among selected tuberculosis-causing mycobacteria
Proc Natl Acad Sci U S A. (2016) 113(35):9876-81
doi: 10.1073/pnas.1604921113