Publications 2016

St John EP. et al.
454 HIV-1 Alpha Study Group. A Follow-Up of the Multicenter Collaborative Study on HIV-1 Drug Resistance and TropismTesting sing 454 Ultra Deep Pyrosequencing
PLoS One. (2016) 11(1):e0146687
doi: 10.1371/journal.pone.0146687

Plucain J. et al.
Contrasting effects of historical contingency on phenotypic and genomic trajectories during a two-step evolution experiment with bacteria
BMC Evol Biol. (2016) 16:86
doi: 10.1186/s12862-016-0662-8

Accarias S. et al.
Single-cell analysis reveals new subset markers of murine peritoneal macrophages and highlights macrophage dynamics upon Staphylococcus aureus peritonitis
Innate Immun. (2016) (5):382-92
doi: 10.1177/ 1753425916651330

Belda E. et al.
The revisited genome of Pseudomonas putida KT2440 enlightens its value as a robust metabolic chassis
Environ Microbiol. (2016) 18(10):3403-3424
doi: 10.1111/1462-2920.13230

Alzaid F. et al.
IRF5 governs liver macrophage activation that promotes hepatic fibrosis in mice and humans
JCI Insight. (2016) Dec 8. 1(20):e88689
doi:

Koechler S. et al.
Arsenite response in Coccomyxa sp. Carn explored by transcriptomic and non-targeted metabolomic approaches
Environmental Microbiology. (2016) pr.18(4):1289-300
doi: 10.1111/1462-2920.13227

Haas G. et al.
Identification of factors involved in target RNA-directed microRNA degradation
Nucleic Acids Res. (2016) 44(6):2873-87
doi: 10.1093/nar/gkw040

Le Bescot, N. et al.
Global patterns of pelagic dinoflagellate diversity across protist size classes unveiled by metabarcoding
Environmental Microbiology. (2016) 18(2): p. 609-626
doi:

Weissenbach, J. et al.
Microbiotes and metagenomics
M S-Medecine Sciences. (2016) 32(11): p. 937-943
doi:

Merlevede J. et al.
Mutation allele burden remains unchanged in chronic myelomonocytic leukaemia responding to hypomethylating agents
Nat Commun. (2016) 7: 10767
doi: 10.1038/ncomms10767

Guidi, L. et al.
Plankton networks driving carbon export in the oligotrophic ocean
Nature. (2016) 532(7600): p. 465-470
doi: 10.1038/nature16942

Moutel S. et al.
NaLi-H1: A universal synthetic library of humanized nanobodies providing highly functional antibodies and intrabodies
Elife. (2016) Jul 19.5. pii: e16228
doi: 10.7554/eLife.16228

David S. et al.
Multiple major disease-associated clones of Legionella pneumophila have emerged recently and independently
Genome Res. (2016) 26(11):1555-1564
doi:

Schartner V. et al.
Dihydropyridine receptor (DHPR, CACNA1S) congenital myopathy
Acta Neuropathol. (2016) Dec 23
doi: 10.1007/s00401-016-1656-8

Mayjonade B. et al.
Extraction of high-molecular-weight genomic DNA for long-read sequencing of single molecules
BioTechniques. (2016) 61:203-205
doi: 10.2144/000114460

Hardies K. et al.
Loss of SYNJ1 dual phosphatase activity leads to early onset refractory seizures and progressive neurological decline
Brain. (2016) 139(Pt 9):2420-30
doi: 10.1093/brain/aww180

Le Provost, G. et al.
Implication of the suberin pathway in adaptation to waterlogging and hypertrophied lenticels formation in pedunculate oak (Quercus robur L.)
Tree Physiology. (2016) 36(11): p. 1330-1342
doi:

Leitwein M. et al.
Genome-wide nucleotide diversity of hatchery-reared Atlantic and Mediterranean strains of brown trout Salmo trutta compared to wild Mediterranean populations
J Fish Biol. (2016) 89:2717-2734
doi:

Prasad MK. et al.
A targeted next-generation sequencing assay for the molecular diagnosis of genetic disorders with orodental involvement
J Med Genet. 2016 53(2):98-110
doi: 10.1136/jmedgenet-2015-103302

Popova T. et al.
Ovarian Cancers Harboring Inactivating Mutations in CDK12 Display a Distinct Genomic Instability Pattern Characterized by Large Tandem Duplications
Cancer Res. (2016) 76(7):1882-91
doi: 10.1158/0008-5472.CAN-15-2128

Diodato A. et al.
Molecular signatures of neural connectivity in the olfactory cortex
Nat Commun. (2016) 7:12238
doi: 10.1038/ncomms12238

Caubit X. et al.
TSHZ3 deletion causes an autism syndrome and defects in cortical projection neurons
Nat Genet. (2016) 48:1359-69
doi: 10.1038/ng.3681

Le Guennec K. et al.
17q21.31 duplication causes prominent tau-related dementia with increased MAPT expression
Mol Psychiatry. (2016) Dec 13
doi: 10.1038/mp.2016.226

Boussaha M. et al.
Construction of a large collection of small genome variations in French dairy and beef breeds using whole-genome sequences
Genetics Selection Evolution. (2016) 48:87
doi: 10.1186/s12711-016-0268-z

Demais V. et al.
Reversal of Pathologic Lipid Accumulation in NPC1-Deficient Neurons by Drug-Promoted Release of LAMP1-Coated Lamellar Inclusions
J Neurosci. (2016) 36: 8012-25
doi: 10.1523/JNEUROSCI.0900-16.2016

Lescot, M. et al.
Reverse transcriptase genes are highly abundant and transcriptionally active in marine plankton assemblages
Isme Journal. (2016) 10(5): p. 1134-1146
doi:10.1038/ismej.2015.192

 

Aburjaile FF. et al.
Adaptation of Propionibacterium freudenreichii to long-term survival under gradual nutritional shortage
BMC Genomics. (2016) 17:1007
doi:

Sapriel G. et al.
Genome-wide mosaicism within Mycobacterium abscessus: evolutionary and epidemiological implications
BMC Genomics. (2016) 17:118
doi: 10.1186/s12864-016-2448-1

Zhang SD. et al.
Genomic and physiological analysis reveals versatile metabolic capacity of deep-sea Photobacterium phosphoreum ANT-2200.
Extremophiles. (2016) 20(3):301-10
doi: 10.1007/s00792-016-0822-1

Tenaillon O. et al.
Tempo and mode of genome evolution in a 50,000-generation experiment
Nature. (2016) 536(7615):165-70
doi: