Publications 2016

Acemel R.D. et al.
A single three-dimensional chromatin compartment in amphioxus indicates a stepwise evolution of vertebrate Hox bimodal regulation
Nature Genetics. (2016) 48(3): p. 336-341
doi: 10.1038/ng.3497

Wragg D. et al.
Whole-genome resequencing of honeybee drones to detect genomic selection in a population managed for royal jelly
Sci Rep. (2016) 6:27168
doi: 10.1038/srep27168

Lashermes P. et al.
Inter-genomic DNA Exchanges and Homoeologous Gene Silencing Shaped the Nascent Allopolyploid Coffee Genome (Coffea arabica L.)
G3. (2016) 6:2937-48
doi: 10.1534/g3.116.030858

Chicard, M. et al.
Genomic Copy Number Profiling Using Circulating Free Tumor DNA Highlights Heterogeneity in Neuroblastoma
Clin Cancer Res. (2016) 22(22):5564-5573
doi: 10.1158/1078-0432.CCR-16-0500

Amrani A. et al.
Deciphering the adaptation strategies of Desulfovibrio piezophilus to hydrostatic pressure through metabolic and transcriptional analyses
Environmental microbiology reports. (2016)
doi: 10.1111/1758-2229.12427

Malysheva V. et al.
Reconstruction of gene regulatory networks reveals chromatin remodelers and key transcription factors in tumorigenesis
Genome Med. (2016) May 19.8(1):57
doi: 10.1186/s13073-016-0310-3

Cornejo-Castillo, F.M. et al.
Cyanobacterial symbionts diverged in the late Cretaceous towards lineage-specific nitrogen fixation factories in single-celled phytoplankton
Nature Comm. (2016) 7: p. 11071
doi:

Plucain, J. et al.
Contrasting effects of historical contingency on phenotypic and genomic trajectories during a two-step evolution experiment with bacteria. BMC
Evolutionary Biology. (2016) 16: p. 86
doi:

Satgé C.et al
Reprogramming of DNA methylation is critical for nodule development in Medicago truncatula
Nat Plants
doi: 10.1038/nplants.2016.166

Escudero JA. et al.
Unmasking the ancestral activity of integron integrases reveals a smooth evolutionary transition during functional innovation
Nat Commun. (2016) 7:10937
doi: 10.1038/ncomms10937

Bronnec V. et al.
Adhesion, Biofilm Formation, and Genomic Features of Campylobacter jejuni Bf, an Atypical Strain Able to Grow under Aerobic Conditions
Front Microbiol. (2016) 7:1002.
doi: 10.3389/fmicb.2016.01002

Osteil P. et al.
A Panel of Embryonic Stem Cell Lines Reveals the Variety and Dynamic of Pluripotent States in Rabbits
Stem Cell Reports. (2016) 7(3):383-98
doi: 10.1016/j.stemcr.2016.07.022

Loubiere V. et al.
Coordinate redeployment of PRC1 proteins suppresses tumor formation during Drosophila development
Nat Genet. (2016) 48:1436-42
doi: 10.1038/ng.3671

Sakakini N. et al.
A Positive Feed-forward Loop Associating EGR1 and PDGFA Promotes Proliferation and Self-renewal in Glioblastoma Stem Cells
The journal of biological chemistry. (2016)
doi: 10.1074/jbc.M116.720698

Steed E. et al.
klf2a couples mechanotransduction and zebrafish valve morphogenesis through fibronectin synthesis
Nat Commun. (2016) 7:11646
doi: 10.1038/ncomms11646

Falentin, H. et al.
Permanent draft genome sequence of the probiotic strain Propionibacterium freudenreichii CIRM-BIA 129 (ITG P20). Standards in Genomic
Sciences. (2016) 11
doi:

Roquet, C. et al.
Understanding the evolution of holoparasitic plants: the complete plastid genome of the holoparasite Cytinus hypocistis (Cytinaceae)
Annals of Botany. (2016) 118(5): p. 885-896
doi:

Ailloud F. et al.
In planta comparative transcriptomics of host-adapted strains of Ralstonia solanacearum
Peer J. (2016) Jan 5.4:e1549
doi: 10.1186/s12864-015-1474-8

Gerbore J. et al.
Complete Genome Sequence of Bacillus methylotrophicus Strain B25, a Potential Plant Growth-Promoting Rhizobacterium
Genome Announc. (2016) 4(2)
doi:

Mazuet C. et al.
Diversity of Group I and II Clostridium botulinum Strains from France Including Recently Identified Subtypes
Genome Biol Evol. (2016) 8(6):1643-60
doi: 10.1093/gbe/evw101

Colin E. et al.
Biallelic Variants in UBA5 Reveal that Disruption of the UFM1 Cascade Can Result in Early-Onset Encephalopathy
Am J Hum Genet. (2016) 99(3):695-703
doi: 10.1016/j.ajhg.2016.06.030

Pincez T. et al.
Feasibility and clinical integration of molecular profiling for target identification in pediatric solid tumors
Pediatr Blood Cancer. (2016) Nov 29
doi: 10.1002/pbc.26365

Paban V. et al.
Omics analysis of mouse brain models of human diseases
Gene. (2016)
doi: 10.1016/j.gene.2016.11.022

Schaefer E. et al.
Identification of a novel mutation confirms the implication of IFT172 (BBS20) in Bardet-Biedl syndrome
J Hum Genet. (2016) 61(5):447-50
doi: 10.1038/jhg.2015.162

Farrant, G.K. et al.
Delineating ecologically significant taxonomic units from global patterns of marine picocyanobacteria
Proc Nat Acad Sci U.S.A. (2016) 113(24): p. E3365-E3374
doi:

Roux, S. et al.
Ecogenomics and potential biogeochemical impacts of globally abundant ocean viruses
Nature. (2016) 537(7622): p. 689-693
doi:

Popa A. et al.
Pateamine A-sensitive ribosome profiling reveals the scope of translation in mouse embryonic stem cells
BMC Genomics. (2016) Jan 14.17(1):52
doi: 10.1186/s12864-016-2384-0

Bronnec V. et al.
Draft Genome Sequence of Campylobacter jejuni Bf, an Atypical Strain Able To Grow under Aerobiosis
Genome Announc. (2016) Apr 7.4(2).
doi: 10.1128/genomeA.00058-16

Narbonne-Reveau K. et al.
Neural stem cell-encoded temporal patterning delineates an early window of malignant susceptibility in Drosophila
Elife. (2016) 5: e13463
doi: 10.7554/eLife.13463

Beclin C. et al.
miR-200 family controls late steps of postnatal forebrain neurogenesis via Zeb2 inhibition
Sci Rep. (2016) 6:35729
doi: 10.1038/srep35729