Publications 2016

Bisch G. et al.
Comparative Genomics between Two Xenorhabdus bovienii Strains Highlights Differential Evolutionary Scenarios within an Entomopathogenic Bacterial Species
Genome Biol Evol. (2016) 8(1):148-60
doi: 10.1093/gbe/evv248

Beghain J. et al.
Plasmodium copy number variation scan: gene copy numbers evaluation in haploid genomes
Malar J. (2016) 15:206
doi: 10.1186/s12936-016-1258-x

Mazuet C. et al.
A penicillin- and metronidazole-resistant Clostridium botulinum strain responsible for an infant botulism case
Clin Microbiol Infect. (2016) (7):644.e7-644.e12
doi: 10.1016/j.cmi.2016.04.011

Njamkepo E. et al.
Erratum: Global phylogeography and evolutionary history of Shigella dysenteriae type 1
Nat Microbiol. (2016) 1(11):16209
doi: 10.1038/nmicrobiol.2016.209

Zangari J. et al.
Rapid decay of engulfed extracellular miRNA by XRN1 exonuclease promotes transient epithelial-mesenchymal transition
Nucleic Acids Res. (2016) Dec 19. pii: gkw1284

Zedane L. et al.
Museomics illuminate the history of an extinct, paleoendemic plant lineage (Hesperelaea, Oleaceae) known from an 1875 collection from Guadalupe Island, Mexico
Biological Journal of the Linnean Society
doi: (2016) 117, 44-57

Renaud M. et al.
Expanding the spectrum of PEX10-related peroxisomal biogenesis disorders: slowly progressive recessive ataxia
J Neurol. (2016) 263(8):1552-8
doi: 10.1007/s00415-016-8167-3

Kole, C. et al.
Identification of an Alternative Splicing Product of the Otx2 Gene Expressed in the Neural Retina and Retinal Pigmented Epithelial Cells
PLoS One. (2016) 11(3): p. e0150758

Weissenbach J.
The rise of genomics
Comptes Rendus Biologies. (2016) 339(7-8): p. 231-239

St John EP. et al.
454 HIV-1 Alpha Study Group. A Follow-Up of the Multicenter Collaborative Study on HIV-1 Drug Resistance and TropismTesting sing 454 Ultra Deep Pyrosequencing
PLoS One. (2016) 11(1):e0146687
doi: 10.1371/journal.pone.0146687

Plucain J. et al.
Contrasting effects of historical contingency on phenotypic and genomic trajectories during a two-step evolution experiment with bacteria
BMC Evol Biol. (2016) 16:86
doi: 10.1186/s12862-016-0662-8

Accarias S. et al.
Single-cell analysis reveals new subset markers of murine peritoneal macrophages and highlights macrophage dynamics upon Staphylococcus aureus peritonitis
Innate Immun. (2016) (5):382-92
doi: 10.1177/ 1753425916651330

Belda E. et al.
The revisited genome of Pseudomonas putida KT2440 enlightens its value as a robust metabolic chassis
Environ Microbiol. (2016) 18(10):3403-3424
doi: 10.1111/1462-2920.13230

Alzaid F. et al.
IRF5 governs liver macrophage activation that promotes hepatic fibrosis in mice and humans
JCI Insight. (2016) Dec 8. 1(20):e88689

Koechler S. et al.
Arsenite response in Coccomyxa sp. Carn explored by transcriptomic and non-targeted metabolomic approaches
Environmental Microbiology. (2016) pr.18(4):1289-300
doi: 10.1111/1462-2920.13227

Haas G. et al.
Identification of factors involved in target RNA-directed microRNA degradation
Nucleic Acids Res. (2016) 44(6):2873-87
doi: 10.1093/nar/gkw040

Le Bescot, N. et al.
Global patterns of pelagic dinoflagellate diversity across protist size classes unveiled by metabarcoding
Environmental Microbiology. (2016) 18(2): p. 609-626

Weissenbach, J. et al.
Microbiotes and metagenomics
M S-Medecine Sciences. (2016) 32(11): p. 937-943

Merlevede J. et al.
Mutation allele burden remains unchanged in chronic myelomonocytic leukaemia responding to hypomethylating agents
Nat Commun. (2016) 7: 10767
doi: 10.1038/ncomms10767

Guidi, L. et al.
Plankton networks driving carbon export in the oligotrophic ocean
Nature. (2016) 532(7600): p. 465-470
doi: 10.1038/nature16942

Moutel S. et al.
NaLi-H1: A universal synthetic library of humanized nanobodies providing highly functional antibodies and intrabodies
Elife. (2016) Jul 19.5. pii: e16228
doi: 10.7554/eLife.16228

David S. et al.
Multiple major disease-associated clones of Legionella pneumophila have emerged recently and independently
Genome Res. (2016) 26(11):1555-1564

Schartner V. et al.
Dihydropyridine receptor (DHPR, CACNA1S) congenital myopathy
Acta Neuropathol. (2016) Dec 23
doi: 10.1007/s00401-016-1656-8

Mayjonade B. et al.
Extraction of high-molecular-weight genomic DNA for long-read sequencing of single molecules
BioTechniques. (2016) 61:203-205
doi: 10.2144/000114460

Hardies K. et al.
Loss of SYNJ1 dual phosphatase activity leads to early onset refractory seizures and progressive neurological decline
Brain. (2016) 139(Pt 9):2420-30
doi: 10.1093/brain/aww180

Le Provost, G. et al.
Implication of the suberin pathway in adaptation to waterlogging and hypertrophied lenticels formation in pedunculate oak (Quercus robur L.)
Tree Physiology. (2016) 36(11): p. 1330-1342

Leitwein M. et al.
Genome-wide nucleotide diversity of hatchery-reared Atlantic and Mediterranean strains of brown trout Salmo trutta compared to wild Mediterranean populations
J Fish Biol. (2016) 89:2717-2734

Prasad MK. et al.
A targeted next-generation sequencing assay for the molecular diagnosis of genetic disorders with orodental involvement
J Med Genet. 2016 53(2):98-110
doi: 10.1136/jmedgenet-2015-103302

Popova T. et al.
Ovarian Cancers Harboring Inactivating Mutations in CDK12 Display a Distinct Genomic Instability Pattern Characterized by Large Tandem Duplications
Cancer Res. (2016) 76(7):1882-91
doi: 10.1158/0008-5472.CAN-15-2128

Diodato A. et al.
Molecular signatures of neural connectivity in the olfactory cortex
Nat Commun. (2016) 7:12238
doi: 10.1038/ncomms12238