Publications 2016

Boutet G. et al.
SNP discovery and genetic mapping using genotyping by sequencing of whole genome genomic DNA from a pea RIL population
BMC Genomics. (2016) 17:121
doi: 10.1186/s12864-016-2447-2

Bussard A. et al.
Physiological adjustments and transcriptome reprogramming are involved in the acclimation to salinity gradients in diatoms
Environ Microbiol. (2016)
doi: 10.1111/1462-2920.13398

Khalfallah O. et al.
Depletion of the fragile X mental retardation protein in embryonic stem cells alters the kinetics of neurogenesis
Stem Cells. (2016)
doi: 10.1002/stem.2505

Nibourel O. et al.
Copy-number analysis identified new prognostic marker in acute myeloid leukemia
Leukemia. (2016)
doi: 10.1038/leu.2016.265

Redko Y. et al.
RNase J depletion leads to massive changes in mRNA abundance in Helicobacter pylori
RNA Biol. (2016) 13(2):243-53
doi: 10.1080/15476286.2015.1132141

Bandiera S. et al.
HCV-induced up-regulation of miR-146a-5p in hepatocytes promotes viral infection and deregulates metabolic pathways associated with liver disease pathogenesis
J Virol (2016) 90(14):6387-400
doi: 10.1128/JVI.00619-16

Arrigoni, R. et al.
The complete mitochondrial genome of Acanthastrea maxima (Cnidaria, Scleractinia, Lobophylliidae)
Mitochondrial DNA. (2016) 27(2): p. 927-928
doi:

Petitot, A.S. et al.
Dual RNA-seq reveals Meloidogyne graminicola transcriptome and candidate effectors during the interaction with rice plants
Molecular Plant Pathology. (2016) 17(6): p. 860-874
doi:

Bataillon T. et al.
A replicated climate change field experiment reveals rapid evolutionary response in an ecologically important soil invertebrate
Glob Chang Biol. (2016) 22:2370-9
doi:

Bernut A. et al.
Insights into the smooth-to-rough transitioning in Mycobacterium bolletii unravels a functional Tyr residue conserved in all mycobacterial MmpL family members
Mol Microbiol. (2016) 99(5):866-83
doi: 10.1111/mmi.13283

Popa A. et al.
RiboProfiling: a Bioconductor package for standard Ribo-seq pipeline processing
F1000Res. (2016) 5:1309
doi: 10.12688/f1000research.8964

Guerin C. et al.
Gene coexpression network analysis of oil biosynthesis in an interspecific backcross of oil palm
Plant J. (2016) 87:423-41
doi: 10.1111/tpj.13208

O'Grady GL. et al.
Variants in the Oxidoreductase PYROXD1 Cause Early-Onset Myopathy with Internalized Nuclei and Myofibrillar Disorganization
Am J Hum Genet. (2016) .99(5):1086-1105
doi: 10.1016/j.ajhg.2016.09.005

Galindo-Albarrán AO. et al.
CD8+ T Cells from Human Neonates Are Biased toward an Innate Immune Response
Cell reports. (2016)
doi: 10.1016/j.celrep.10.056

Freyermuth F. et al.
Splicing misregulation of SCN5A contributes to cardiac-conduction delay and heart arrhythmia in myotonic dystrophy
Nat Commun. (2016) 7: 11067
doi: 10.1038/ncomms11067

Aubriot, X. et al.
Molecular phylogenetics of Sarcolaenaceae (Malvales), Madagascar's largest endemic plant family
Botanical Journal of the Linnean Society. (2016) 182(4): p. 729-743
doi:

Pichon, A. et al.
Parasitic wasps have domesticated viruses repeatedly during their evolution
M S-Medecine Sciences. (2016) 32(8-9): p. 699-703
doi:

Pasquier J. et al.
Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database
BMC Genomics. (2016) 17:368
doi:

Langer D. et al.
Essential role of the TFIID subunit TAF4 in murine embryogenesis and embryonic stem cell differentiation
Nat Commun. (2016) 7: 11063
doi: 10.1038/ncomms11063

Nicolas G. et al.
CNR-MAJ collaborators. SORL1 rare variants: a major risk factor for familial early-onset Alzheimer's disease
Mol Psychiatry. (2016) 21(6):831-6
doi: 10.1038/mp.2015.121

Pasi M. et al.
DNA minicircles clarify the specific role of DNA structure on retroviral integration
Nucleic Acids Res. (2016) 44(16):7830-47
doi: 10.1093/nar/gkw651

Fortuna TM. et al.
Polymorphic Microsatellite Markers for the Tetrapolar Anther-Smut Fungus Microbotryum saponariae Based on Genome Sequencing
PLoS One. (2016) 11(11):e0165656
doi: 10.1371/journal.pone.0165656

Paban V. et al.
Molecular gene expression following blunt and rotational models of traumatic brain injury parallel injuries associated with stroke and depression
Journal of Translational Science. (2016)
doi: 10.15761/JTS.1000159

Martianov I. et al.
TRF2 is recruited to the pre-initiation complex as a testis-specific subunit of TFIIA/ALF to promote haploid cell gene expression
Sci Rep. (2016) 6:32069
doi: 10.1038/srep32069

Boutte, J. et al.
Reference Transcriptomes and Detection of Duplicated Copies in Hexaploid and Allododecaploid Spartina Species (Poaceae)
Genome Biology and Evolution. (2016) 8(9): p. 3030-3044
doi:

Plomion, C. et al.
Decoding the oak genome: public release of sequence data, assembly, annotation and publication strategies
Molecular Ecology Resources. (2016) 16(1): p. 254-265
doi:

Satgé C.et al
Reprogramming of DNA methylation is critical for nodule development in Medicago truncatula
Nat Plants
doi: 10.1038/nplants.2016.166

Acemel R.D. et al.
A single three-dimensional chromatin compartment in amphioxus indicates a stepwise evolution of vertebrate Hox bimodal regulation
Nature Genetics. (2016) 48(3): p. 336-341
doi: 10.1038/ng.3497

Wragg D. et al.
Whole-genome resequencing of honeybee drones to detect genomic selection in a population managed for royal jelly
Sci Rep. (2016) 6:27168
doi: 10.1038/srep27168

Lashermes P. et al.
Inter-genomic DNA Exchanges and Homoeologous Gene Silencing Shaped the Nascent Allopolyploid Coffee Genome (Coffea arabica L.)
G3. (2016) 6:2937-48
doi: 10.1534/g3.116.030858