Metagenome

Ping Han et al.
Unveiling unique microbial nitrogen cycling and nitrification driver in coastal Antarctica
Nature Communications 2024, vol. 15, issue 1
doi: 10.1038/s41467-024-47392-4

Christophe Djemiel et al.
Unraveling biogeographical patterns and environmental drivers of soil fungal diversity at the French national scale
SOIL 2024, vol. 10, issue 1
doi: 10.5194/soil-10-251-2024

Nils Giordano et al.
Genome-scale community modelling reveals conserved metabolic cross-feedings in epipelagic bacterioplankton communities
Nature Communications 2024, vol. 15, issue 1
doi: 10.1038/s41467-024-46374-w

Camille d’Humières et al.
Perturbation and resilience of the gut microbiome up to 3 months after β-lactams exposure in healthy volunteers suggest an important role of microbial β-lactamases
Microbiome 2024, vol. 12, issue 1
doi: 10.1186/s40168-023-01746-0

Angelina Beavogui et al.
The defensome of complex bacterial communities
Nature Communications 2024, vol. 15, issue 1
doi: 10.1038/s41467-024-46489-0

Nilmara de Oliveira Alves et al.
The colibactin-producing Escherichia coli alters the tumor microenvironment to immunosuppressive lipid overload facilitating colorectal cancer progression and chemoresistance
Gut Microbes 2024, vol. 16, issue 1
doi: 10.1080/19490976.2024.2320291

Téo Lemane et al.
Indexing and real-time user-friendly queries in terabyte-sized complex genomic datasets with kmindex and ORA
Nature Computational Science 2024, vol. 4, issue 2
doi: 10.1038/s43588-024-00596-6

Olivier Harlé et al.
Deciphering the metabolism of Lactobacillus delbrueckii subsp. delbrueckii during soy juice fermentation using phenotypic and transcriptional analysis
Applied and Environmental Microbiology 2024
doi: 10.1128/aem.01936-23

Clemens Schauberger et al.
Metagenome-assembled genomes of deep-sea sediments: changes in microbial functional potential lag behind redox transitions
ISME Communications 2024, vol. 4, issue 1
doi: 10.1093/ismeco/ycad005

Blandine Trouche et al.
Distribution and genomic variation of ammonia-oxidizing archaea in abyssal and hadal surface sediments
ISME Communications 2023, vol. 3, issue 1
doi: 10.1038/s43705-023-00341-6