Bioinformatics

Julien Vibert et al.
Identification of Tissue of Origin and Guided Therapeutic Applications in Cancers of Unknown Primary Using Deep Learning and RNA Sequencing (TransCUPtomics)
The Journal of Molecular Diagnostics 2021, vol. 23, issue 10
doi: 10.1016/j.jmoldx.2021.07.009

Sébastien Riquier et al.
Long non-coding RNA exploration for mesenchymal stem cell characterisation
BMC Genomics 2021, vol. 22, issue 1
doi: 10.1186/s12864-020-07289-0

Miriam I. Brandt et al.
Bioinformatic pipelines combining denoising and clustering tools allow for more comprehensive prokaryotic and eukaryotic metabarcoding
Molecular Ecology Resources 2021
doi: 10.1111/1755-0998.13398

Léa Meunier et al.
DNA Methylation Signatures Reveal the Diversity of Processes Remodeling Hepatocellular Carcinoma Methylomes
Hepatology 2021, vol. 74, issue 2
doi: 10.1002/hep.31796

Caroline Vernette et al.
The Ocean barcode atlas: A web service to explore the biodiversity and biogeography of marine organisms
Molecular Ecology Resources 2021, vol. 21, issue 4
doi: 10.1111/1755-0998.13322

Alexis Hardy et al.
DNAModAnnot: a R toolbox for DNA modification filtering and annotation
Bioinformatics 2021, vol. 37, issue 17
doi: 10.1093/bioinformatics/btab032

Ozvan Bocher et al.
Extension of SKAT to multi-category phenotypes through a geometrical interpretation
European Journal of Human Genetics 2021 vol.29
doi: 10.1038/s41431-020-00792-8

Dimitra Sakoula et al.
Enrichment and physiological characterization of a novel comammox Nitrospira indicates ammonium inhibition of complete nitrification
The ISME Journal 2020
doi: 10.1038/s41396-020-00827-4

Agnès Barbance et al.
Genetic Analysis of Citrobacter sp.86 Reveals Involvement of Corrinoids in Chlordecone and Lindane Biotransformations
Frontiers in Microbiology 2020, vol. 11
doi: 10.3389/fmicb.2020.590061

Benjamin Istace et al.
BiSCoT: improving large eukaryotic genome assemblies with optical maps
PeerJ 2020, vol. 8
doi: 10.7717/peerj.10150