Publications 2018

Plainvert C et al.
A clone of the emergent Streptococcus pyogenes emm89 clade responsible for a large outbreak in a post-surgery oncology unit in France
Medical Microbiology and Immunology 2018 207(5-6)
doi: 10.1007/s00430-018-0546-1

Raymond O et al.

The Rosa genome provides new insights into the domestication of modern roses.

Nat Genet. 2018 50(6)

 doi: 10.1038/s41588-018-0110-3.


Decelle J et al.
Worldwide Occurrence and Activity of the Reef-Building Coral Symbiont Symbiodinium in the Open Ocean
Current Biology 2018 28(22)
doi: 10.1016/j.cub.2018.09.024

Morard R et al.
Surface ocean metabarcoding confirms limited diversity in planktonic foraminifera but reveals unknown hyper-abundant lineages
Scientific Reports 2018 8(1)
doi: 10.1038/s41598-018-20833-z

Zarif H et al.
CD4$mathplus$ T Cells Have a Permissive Effect on Enriched Environment-Induced Hippocampus Synaptic Plasticity
Frontiers in Synaptic Neuroscience 2018 10
doi: 10.3389/fnsyn.2018.00014

Dubot C et al.
Comprehensive genomic profiling of head and neck squamous cell carcinoma reveals FGFR1 amplifications and tumour genomic alterations burden as prognostic biomarkers of survival
European Journal of Cancer 2018 91
doi: 10.1016/j.ejca.2017.12.016

Ronsmans A et al.
Transcription-dependent spreading of canonical yeast GATA factor across the body of highly expressed genes
Cold Spring Harbor Laboratory 2017
doi: 10.1101/238550

Bayard Q et al.
Cyclin A2/E1 activation defines a hepatocellular carcinoma subclass with a rearrangement signature of replication stress
Nature Communications 2018 9(1)
doi: 10.1038/s41467-018-07552-9

Delyon J et al.
STAT3 Mediates Nilotinib Response in KIT-Altered Melanoma: A Phase II Multicenter Trial of the French Skin Cancer Network
Journal of Investigative Dermatology 2018 138(1)
doi: 10.1016/j.jid.2017.07.839

Magalhães M et al.
Dynamic changes of DNA methylation and lung disease in cystic fibrosis: lessons from a monogenic disease
Epigenomics 2018 10(8)
doi: 10.2217/epi-2018-0005

Vuillaume ML et al.
Whole genome sequencing identifies a de novo 2.1?Mb balanced paracentric inversion disrupting FOXP1 and leading to severe intellectual disability
Clinica Chimica Acta 2018 485
doi: 10.1016/j.cca.2018.06.048

Varet H et al.
checkMyIndex: a web-based R/Shiny interface for choosing compatible sequencing indexes
Bioinformatics 2018 35(5)
doi: 10.1093/bioinformatics/bty706

Raimondi C et al.
Molecular signature of the imprintosome complex at the mating-type locus in fission yeast
Microbial Cell 2018 5(4)
doi: 10.15698/mic2018.04.623

Orsucci M et al.
Larval transcriptomic response to host plants in two related phytophagous lepidopteran species: implications for host specialization and species divergence
BMC Genomics 2018 19(1)
doi: 10.1186/s12864-018-4589-x

Shiota h et al.
Nut Directs p300-Dependent, Genome-Wide H4 Hyperacetylation in Male Germ Cells
Cell Reports 2018 24(13)
doi: 10.1016/j.celrep.2018.08.069

Poirier S et al.
Detection of an amplification bias associated to Leuconostocaceae family with a universal primer routinely used for monitoring microbial community structures within food products
BMC Research Notes 2018 11(1)
doi: 10.1186/s13104-018-3908-2

Darde TA et al.
TOXsIgN: a cross-species repository for toxicogenomic signatures
Bioinformatics 2018 34(12)
doi: 10.1093/bioinformatics/bty040

Segura A et al.
Factors Involved in the Persistence of a Shiga Toxin-Producing Escherichia coli O157:H7 Strain in Bovine Feces and Gastro-Intestinal Content
Frontiers in Microbiology 2018 9
doi: 10.3389/fmicb.2018.00375

Fumey J et al.
Evidence for late Pleistocene origin of Astyanax mexicanus cavefish
BMC Evolutionary Biology 2018 18(1)
doi: 10.1186/s12862-018-1156-7

Torres-Cortés G et al.
Functional Microbial Features Driving Community Assembly During Seed Germination and Emergence
Frontiers in Plant Science 2018 9
doi: 10.3389/fpls.2018.00902

Zarrillo S et al.
The use and domestication of Theobroma cacao during the mid-Holocene in the upper Amazon
Nature Ecology & Evolution 2018 2(12)
doi: 10.1038/s41559-018-0697-x

Dias GM et al.
Vibrio tapetis Displays an Original Type IV Secretion System in Strains Pathogenic for Bivalve Molluscs
Frontiers in Microbiology 2018 9
doi: 10.3389/fmicb.2018.00227

Murat C et al.
Pezizomycetes genomes reveal the molecular basis of ectomycorrhizal truffle lifestyle
Nature Ecology & Evolution 2018 2(12)
doi: 10.1038/s41559-018-0710-4

Pruneau L et al.
Comparative Transcriptome Profiling of Virulent and Attenuated Ehrlichia ruminantium Strains Highlighted Strong Regulation of map1- and Metabolism Related Genes
Frontiers in Cellular and Infection Microbiology 2018 8
doi: 10.3389/fcimb.2018.00153

El-Daher MT et al.
Tetratricopeptide repeat domain 7A is a nuclear factor that modulates transcription and chromatin structure
Cell Discovery 2018 4(1)
doi: 10.1038/s41421-018-0061-y

Tang-Huau TL et al.
Human in vivo-generated monocyte-derived dendritic cells and macrophages cross-present antigens through a vacuolar pathway
Nature Communications 2018 9(1)
doi: 10.1038/s41467-018-04985-0

Ben Hafsa A et al.
Status of potato viruses in Tunisia and molecular characterization of Tunisian Potato Virus X (PVX isolates)
European Journal of Plant Pathology 2017 151(3)
doi: 10.1007/s10658-017-1407-2

Deveau P et al.
QuantumClone: clonal assessment of functional mutations in cancer based on a genotype-aware method for clonal reconstruction
Bioinformatics 2018 34(11)
doi: 10.1093/bioinformatics/bty016

Mary L et al.
Disease-causing variants in TCF4 are a frequent cause of intellectual disability: lessons from large-scale sequencing approaches in diagnosis
European Journal of Human Genetics 2018 26(7)
doi: 10.1038/s41431-018-0096-4

Vulin A et al.
Severe PATCHED1 Deficiency in Cancer-Prone Gorlin Patient Cells Results in Intrinsic Radiosensitivity
International Journal of Radiation Oncology*Biology*Physics 2018 102(2)
doi: 10.1016/j.ijrobp.2018.05.057