Publications 2017

Jérôme Audoux et al.
DE-kupl: exhaustive capture of biological variation in RNA-seq data through k-mer decomposition
Genome Biology 2017, vol. 18, issue 1
doi: 10.1186/s13059-017-1372-2

Gustave Djedatin et al.
DuplicationDetector , a light weight tool for duplication detection using NGS data
Current Plant Biology 2017, vol. 9-10
doi: 10.1016/j.cpb.2017.07.001

Florence Rufflé et al.
New chimeric RNAs in acute myeloid leukemia
F1000Research 2017, vol. 6
doi: 10.12688/f1000research.11352.1

Valentina Boeva et al.
Heterogeneity of neuroblastoma cell identity defined by transcriptional circuitries
Nature Genetics 2017, vol. 49, issue 9
doi: 10.1038/ng.3921

Stéphanie Guey et al.
Rare RNF213 variants in the C-terminal region encompassing the RING-finger domain are associated with moyamoya angiopathy in Caucasians
European Journal of Human Genetics 2017, vol. 25, issue 8
doi: 10.1038/ejhg.2017.92

Alain Meyer et al.
IFN-β-induced reactive oxygen species and mitochondrial damage contribute to muscle impairment and inflammation maintenance in dermatomyositis
Acta Neuropathologica 2017, vol. 134, issue 4
doi: 10.1007/s00401-017-1731-9

Pierre-Antoine Juge et al.
Shared genetic predisposition in rheumatoid arthritis-interstitial lung disease and familial pulmonary fibrosis
European Respiratory Journal 2017, vol. 49, issue 5
doi: 10.1183/13993003.02314-2016

Bonneaud N. et al.
Control of nerve cord formation by Engrailed and Gooseberry-Neuro: A multi-step, coordinated process.
Dev Biol. (2017) Dec. 432(2):273-285.
doi: 10.1016/j.ydbio.2017.10.018

Domman D. et al.
Integrated view of Vibrio cholerae in the Americas.
Science (2017) Nov. 358(6364):789-793.
doi: 10.1126/science.aao2136

Charmet R. et al.
Association of impaired renal function with venous thrombosis: A genetic risk score approach.
Thromb Res. (2017) Oct. 158:102-107.
doi: 10.1016/j.thromres.2017.08.015

Varrault A. et al.
Identification of Plagl1/Zac1 binding sites and target genes establishes its role in the regulation of extracellular matrix genes and the imprinted gene network.
Nucleic Acids Res. (2017) Oct 13.45(18):10466-10480.
doi: 10.1093/nar/gkx672

Belda E. et al.
Accurate microbial genome annotation using an integrated and user-friendly environment for community expertise of gene functions: The MicroScope Platform. In
Hydrocarbon and Lipid Microbiology Protocols: Genetic, Genomic and System Analyses of Pure Cultures (2017) pp 141-169. Berlin, Heidelberg

Blanchard L. et al.
Conservation and diversity of the IrrE/DdrO-controlled radiation response in radiation-resistant Deinococcus bacteria.
MicrobiologyOpen (2017) Aug. 6(4).
doi: 10.1002/mbo3.477

Tsagmo Ngoune JM. et al.
Transcriptional profiling of Midguts prepared from Trypanosoma/T. congolense-positive Glossina palpalis palpalis collected from two distinct Cameroonian Foci: coordinated signatures of the Midguts' remodeling as T. congolense-supportive niches.
Frontiers in Immunology (2017) Jul. 8:876.
doi: 10.3389/fimmu.2017.00876

Duc C. et al.
Arabidopsis ATRX modulates H3.3 occupancy and fine-tunes gene expression.
Plant Cell. (2017) Jul. 29(7):1773-1793.
doi: 10.1105/tpc.16.00877

Le Tourneau C. et al.
The SHIVA01 trial: what have we learned?
Pharmacogenomics (2017) Jun. 18(9):831-834.
doi: 10.2217/pgs-2017-0062

Sobhani I. et al.
Microbiota as a new indicator of colorectal cancer (CRC) heterogeneity.
J Clin Oncology (2017) May. 35(15) suppl 3615-3615.
doi: doi :10.1200/JCO.2017.35.15_suppl.3615

Dupont H. et al.
Structural alteration of OmpR as a source of ertapenem resistance in a CTX-M-15-producing Escherichia coli O25b:H4 sequence type 131 clinical isolate.
Antimicrob Agents Chemother. (2017) Apr. 61(5). pii: e00014-17.
doi: 10.1128/AAC.00014-17

Mobuchon L. et al.
A GWAS in uveal melanoma identifies risk polymorphisms in the CLPTM1L locus.
NPJ Genom Med. (2017) Mar. 2. pii: 5.
doi: 10.1038/s41525-017-0008-5

Robbe-Saule M. et al.
An optimized method for extracting bacterial RNA from Mouse skin tissue colonized by Mycobacterium ulcerans.
Front Microbiol. (2017) Mar. 8:512.
doi: 10.3389/fmicb.2017.00512

Stoekle HC. et al.
Toward dynamic informed consent.
Med Sci. (Paris) (2017) Feb. 33(2):188-192.
doi: 10.1051/medsci/20173302015

Fogel O. et al.
Epigenetic changes in chronic inflammatory diseases.
Adv Protein Chem Struct Biol. (2017) 106:139-189.
doi: 10.1016/bs.apcsb.2016.09.003

Le Quéré A. et al.
Genomic characterization of Ensifer aridi, a proposed new species of nitrogen-fixing rhizobium recovered from Asian, African and American deserts.
BMC Genomics. (2017) Jan. 18(1):85.
doi: 10.1186/s12864-016-3447-y

Puighermanal E. et al.
Ribosomal Protein S6 Phosphorylation Is Involved in Novelty-Induced Locomotion, Synaptic Plasticity and mRNA Translation.
Front Mol Neurosci. (2017) Dec. 10:419.
doi: 10.3389/fnmol.2017.00419

Chaix R. et al.
Epigenetic clock analysis in long-term meditators.
Psychoneuroendocrinol. (2017) Nov. 85:210-214.
doi: 10.1016/j.psyneuen.2017.08.016

Malfatti E. et al.
Recessive myopalladin mutations cause congenital cap myopathy with unusual rods.
Neuromus. Dis. (2017) Oct. 27: S185-S185.
doi: 10.1016/j.nmd.2017.06.331

Loire E. et al.
Do changes in gene expression contribute to sexual isolation and reinforcement in the house mouse?
Mol Ecol. (2017) Oct. 26(19):5189-5202.
doi: 10.1111/mec.14212

Gouin A. et al.
Two genomes of highly polyphagous lepidopteran pests (Spodoptera frugiperda, Noctuidae) with different host-plant ranges.
Scie. Rep. (2017) Sep. 7(1):11816.
doi: 10.1038/s41598-017-10461-4

Pérez-Pascual D. et al.
The complete genome sequence of the fish pathogen Tenacibaculum maritimum provides insights into virulence mechanisms.
Front Microbiol. (2017) Aug. 8:1542.
doi: 10.3389/fmicb.2017.01542

Gully D. et al.
Complete genome sequence of Bradyrhizobium sp. ORS285, a photosynthetic strain able to establish Nod Factor-Dependent or Nod Factor-Independent symbiosis with Aeschynomene Legumes.
Genome Announc. (2017) Jul. 5(30). pii: e00421-17.
doi: 10.1128/genomeA.00421-17