Publications 2017

Jérôme Audoux et al.
DE-kupl: exhaustive capture of biological variation in RNA-seq data through k-mer decomposition
Genome Biology 2017, vol. 18, issue 1
doi: 10.1186/s13059-017-1372-2

Gustave Djedatin et al.
DuplicationDetector , a light weight tool for duplication detection using NGS data
Current Plant Biology 2017, vol. 9-10
doi: 10.1016/j.cpb.2017.07.001

Florence Rufflé et al.
New chimeric RNAs in acute myeloid leukemia
F1000Research 2017, vol. 6
doi: 10.12688/f1000research.11352.1

Valentina Boeva et al.
Heterogeneity of neuroblastoma cell identity defined by transcriptional circuitries
Nature Genetics 2017, vol. 49, issue 9
doi: 10.1038/ng.3921

Stéphanie Guey et al.
Rare RNF213 variants in the C-terminal region encompassing the RING-finger domain are associated with moyamoya angiopathy in Caucasians
European Journal of Human Genetics 2017, vol. 25, issue 8
doi: 10.1038/ejhg.2017.92

Alain Meyer et al.
IFN-β-induced reactive oxygen species and mitochondrial damage contribute to muscle impairment and inflammation maintenance in dermatomyositis
Acta Neuropathologica 2017, vol. 134, issue 4
doi: 10.1007/s00401-017-1731-9

Pierre-Antoine Juge et al.
Shared genetic predisposition in rheumatoid arthritis-interstitial lung disease and familial pulmonary fibrosis
European Respiratory Journal 2017, vol. 49, issue 5
doi: 10.1183/13993003.02314-2016

Pham N-P. et al.
Comparative genomic analysis of Brevibacterium strains: insights into key genetic determinants involved in adaptation to the cheese habitat.
BMC Genomics (2017) Dec. 18(1):955.
doi: 10.1186/s12864-017-4322-1

Machiela MJ. et al.
Genetic variants related to longer telomere length are associated with increased risk of Renal Cell Carcinoma.
Europ. Urol. (2017) Nov. 72 (5): 747-754
doi: 10.1016/j.eururo.2017.07.015

Medina C. et al.
Characterization of microRNAs from Arabidopsis galls highlights a role for miR159 in the plant response to the root-knot nematode Meloidogyne incognita.
New Phytol. (2017) Nov. 216(3):882-896.
doi: 10.1111/nph.14717

Lanaud C. et al.
Deciphering the Theobroma cacao self-incompatibility system: from genomics to diagnostic markers for self-compatibility.
J Exp Bot. (2017) Oct. 68(17):4775-4790.
doi: 10.1093/jxb/erx293

Ivanova ELet al.
Homozygous truncating variants in TBC1D23 cause Pontocerebellar Hypoplasia and alter cortical development.
Am J Hum Genet. (2017) Sep. 101(3):428-440.
doi: 10.1016/j.ajhg.2017.07.010

Dickson LB. et al.
Carryover effects of larval exposure to different environmental bacteria drive adult trait variation in a mosquito vector.
Sci Adv (2017) Aug. 3(8):e1700585.
doi: 10.1126/sciadv.1700585.

Bellenguez C. et al.
Contribution to Alzheimer's disease risk of rare variants in TREM2, SORL1, and ABCA7 in 1779 cases and 1273 controls.
Neurobiol. Aging (2017) Jul. pii: S0197-4580(17)30232-4.
doi: 10.1016/j.neurobiolaging.2017.07.001

Nicolas G. et al.
Brain calcifications and PCDH12 variants.
Neurol Genet. (2017) Jul. 3(4):e166.
doi: 10.1212/NXG.0000000000000166

Penaud-Budloo M. et al.
Accurate identification and quantification of DNA species by Next-Generation Sequencing in adeno-associated viral vectors produced in Insect cells.
Hum Gene Ther Methods (2017) Jun. 28(3):148-162.
doi: 10.1089/hgtb.2016.185

Hautefort A. et al.
Pulmonary endothelial cell DNA methylation signature in pulmonary arterial hypertension.
Oncotarget (2017) May. 8(32):52995-53016.
doi: 10.18632/oncotarget.18031

Deutsch S-M. et al.
Deutsch S-M. et al. Identification of proteins involved in the anti-inflammatory properties of Propionibacterium freudenreichii by means of a multi-strain study.
Sci. Rep. (2017) Apr. 7:46409.
doi: 10.1038/srep46409

Thomas C. et al.
Erratum to: Rapid transcriptional plasticity of duplicated gene clusters enables a clonally reproducing aphid to colonise diverse plant species.
Genome Biology (2017) Apr. 18 (1): 63.
doi: doi :10.1186/s13059-017-1202-6

Mercey O. et al.
Characterizing isomiR variants within the microRNA-34/449 family.
FEBS Lett. (2017) Mar. 591(5):693-705.
doi: 10.1002/1873-3468.12595

Arandel L. et al.
Immortalized human myotonic dystrophy muscle cell lines to assess therapeutic compounds.
Disease Models Mechanisms (2017) Feb. 10: 487-497.
doi: 10.1242/dmm.027367

Joshi S. et al.
TEAD transcription factors are required for normal primary myoblast differentiation in vitro and muscle regeneration in vivo.
PLoS Genet. (2017) Feb. 13(2):e1006600.
doi: 10.1371/journal.pgen.1006600

Mangot JF. et al.
Accessing the genomic information of unculturable oceanic picoeukaryotes by combining multiple single cells.
Sci Rep. (2017) Jan. 7:41498.
doi: 10.1038/srep41498.

Biancalana V. et al.
Affected female carriers of MTM1 mutations display a wide spectrum of clinical and pathological involvement: delineating diagnostic clues.
Acta Neuropathol. (2017) Dec. 134(6):889-904.
doi: 10.1007/s00401-017-1748-0

Manes G. et al.
A novel duplication of PRMD13 causes North Carolina macular dystrophy: overexpression of PRDM13 orthologue in drosophila eye reproduces the human phenotype.
Hum Mol Genet. (2017) Nov. 26(22):4367-4374.
doi: 10.1093/hmg/ddx322

Ragheb R. et al.
Interplay between trauma and Pseudomonas entomophila infection in flies: a central role of the JNK pathway and CrebA.
Sci Rep. (2017) Nov. 7(1):16222.
doi: 10.1038/s41598-017-14969-7

Recanati A. et al.
A spectral algorithm for fast de novo layout of uncorrected long nanopore reads.
Bioinformatics (2017) Oct. 33(20):3188-3194.
doi: 10.1093/bioinformatics/btx370

Su XP. et al.
NSD1 inactivation and SETD2 mutation drive a convergence toward loss of function of H3K36 writers in Clear Cell Renal Cell Carcinomas.
Cancer Res. (2017) Sept. 77 (18): 4835-4845
doi: 10.1158/0008-5472.CAN-17-0143

Hervé M. et al.
Translational identification of transcriptional signatures of major depression and antidepressant response.
Front. Mol. in Neuroscience. (2017) Aug. 10:248.
doi: 10.3389/fnmol.2017.00248

Niewiadomska-Cimicka A. et al.
Genome-wide analysis of RARbeta transcriptional targets in Mouse striatum links retinoic acid signaling with Huntington's disease and other neurodegenerative disorders.
Mol Neurobiol. (2017) Jul. 54(5):3859-3878.
doi: 10.1007/s12035-016-0010-4