Publications 2017

Jérôme Audoux et al.
DE-kupl: exhaustive capture of biological variation in RNA-seq data through k-mer decomposition
Genome Biology 2017, vol. 18, issue 1
doi: 10.1186/s13059-017-1372-2

Gustave Djedatin et al.
DuplicationDetector , a light weight tool for duplication detection using NGS data
Current Plant Biology 2017, vol. 9-10
doi: 10.1016/j.cpb.2017.07.001

Florence Rufflé et al.
New chimeric RNAs in acute myeloid leukemia
F1000Research 2017, vol. 6
doi: 10.12688/f1000research.11352.1

Valentina Boeva et al.
Heterogeneity of neuroblastoma cell identity defined by transcriptional circuitries
Nature Genetics 2017, vol. 49, issue 9
doi: 10.1038/ng.3921

Stéphanie Guey et al.
Rare RNF213 variants in the C-terminal region encompassing the RING-finger domain are associated with moyamoya angiopathy in Caucasians
European Journal of Human Genetics 2017, vol. 25, issue 8
doi: 10.1038/ejhg.2017.92

Alain Meyer et al.
IFN-β-induced reactive oxygen species and mitochondrial damage contribute to muscle impairment and inflammation maintenance in dermatomyositis
Acta Neuropathologica 2017, vol. 134, issue 4
doi: 10.1007/s00401-017-1731-9

Pierre-Antoine Juge et al.
Shared genetic predisposition in rheumatoid arthritis-interstitial lung disease and familial pulmonary fibrosis
European Respiratory Journal 2017, vol. 49, issue 5
doi: 10.1183/13993003.02314-2016

Dao LTM. et al.
Genome-wide characterization of mammalian promoters with distal enhancer functions.
Nature Genetics. (2017) Jul. 49(7):1073-1081.
doi: 10.1038/ng.3884

Saultier P. et al.
Macrothrombocytopenia and dense granule deficiency associated with FLI1 variants: ultrastructural and pathogenic features.
Haematologica (2017) Jun. 102(6):1006-1016.
doi: 10.3324/haematol.2016.153577

Cerisy T. et al.
Evolution of a biomass-fermenting Bacterium to resist lignin phenolics.
Appl Environ Microbiol. (2017) May. 83(11). pii: e00289-17.
doi: 10.1128/AEM.00289-17

Tarabay Y. et al.
Tex19 paralogs are new members of the piRNA pathway controlling retrotransposon suppression.
J Cell Sci. (2017) Apr. 130(8):1463-1474.
doi: 10.1242/jcs.188763

Hamidou Soumana I. et al.
Comparative genomics of Glossina palpalis gambiensis and G. morsitans morsitans to reveal gene orthologs involved in infection by Trypanosoma brucei gambiense.
Front Microbiol. (2017) Apr. 8:540.
doi: 10.3389/fmicb.2017.00540

Bohm J. et al.
ORAI1 mutations with distinct channel gating defects in tubular aggregate myopathy.
Human Mutation (2017).Mar. 38 (4): 426-438
doi: 10.1002/humu.23172

Bruel AL. et al.
Autosomal recessive truncating MAB21L1 mutation associated with a syndromic scrotal agenesis.
Clin Genet. (2017) Feb. 91(2):333-338.
doi: 10.1111/cge.12794

Costantino F. et al.
A family-based genome-wide association study reveals an association of spondyloarthritis with MAPK14.
Ann Rheum Dis. (2017) Jan. 76(1):310-314.
doi: 10.1136/annrheumdis-2016-209449

Rougemont Q. et al.
Inferring the demographic history underlying parallel genomic divergence among pairs of parasitic and non-parasitic lamprey ecotypes.
Mol Ecol. (2017) Jan. 26(1):142-162.
doi: 10.1111/mec.13664

Flachsbart F. et al.
Identification and characterization of two functional variants in the human longevity gene FOXO3.
Nat Commun. 2017 Dec. 8(1):2063.
doi: 10.1038/s41467-017-02183-y

Chauvin C. et al.
High-throughput drug screening identifies Pazopanib and Clofilium Tosylate as promising treatments for Malignant Rhabdoid Tumors.
Cell Rep. (2017) Nov. 21(7):1737-1745.
doi: 10.1016/j.celrep.2017.10.076

Capela D. et al.
Recruitment of a lineage-specific virulence regulatorypathway promotes intracellular infection by a plant pathogen experimentally evolved into a legume symbiont.
Mol Biol Evol. (2017) Oct. 34(10):2503-2521.
doi: 10.1093/molbev/msx165

Terrat S. et al.
Mapping and predictive variations of soil bacterial richness across France.
PLoS One (2017) Oct. 12(10):e0186766.
doi: 10.1371/journal.pone.0186766

Rochat T. et al.
Genomic characterization of Flavobacterium psychrophilum serotypes and development of a multiplex PCR-based serotyping scheme.
Front in Microbiol.(2017) Sep. 8:1752.
doi: 10.3389/fmicb.2017.01752

Duarte M. et al.
Functional soil metagenomics: elucidation of polycyclic aromatic hydrocarbon degradation potential following 12 years of in situ bioremediation.
Environ Microbiol. (2017) Aug.19(8):2992-3011.
doi: 10.1111/1462-2920.13756

Thierion E. et al.
Krox20 hindbrain regulation incorporates multiple modes of cooperation between cis-acting elements.
PLoS Genet. (2017) Jul. 13(7):e1006903.
doi: 10.1371/journal.pgen.1006903

Martinot E. et al.
The bile acid nuclear receptor FXRalpha is a critical regulator of Mouse germ cell fate.
Stem Cell Reports (2017) Jul. 9(1):315-328.
doi: 10.1016/j.stemcr.2017.05.036

Scelo G. et al.
Genome-wide association study identifies multiple risk loci for renal cell carcinoma.
Nat Commun. (2017) Jun. 8:15724.
doi: 10.1038/ncomms15724

Richer W. et al.
Embryonic signature distinguishes pediatric and adult rhabdoid tumors from other SMARCB1-deficient cancers.
Oncotarget (2017) May. 8(21):34245-34257.
doi: 10.18632/oncotarget.15939

Arguel M.J. et al.
A cost effective 5?selective single cell transcriptome profiling approach with improved UMI design.
Nucleic Acids Res. (2017) Apr. 45(7):e48.
doi: 10.1093/nar/gkw1242

Saintamand A. et al.
E(?) and 3'RR IgH enhancers show hierarchic unilateral dependence in mature B-cells.
Sci Rep. (2017) Mar. 7(1):442.
doi: 10.1038/s41598-017-00575-0

Arseneault M. et al.
Loss of chromosome Y leads to down regulation of KDM5D and KDM6C epigenetic modifiers in clear cell renal cell carcinoma.
Sci Rep. (2017) Mar. 7:44876.
doi: 10.1038/srep44876

Pivot X. et al.
Constitutional variants are not associated with HER2-positive breast cancer: results from the SIGNAL/PHARE clinical cohort.
NPJ Breast Cancer (2017) Feb. 3:4.
doi: 10.1038/s41523-017-0005-y