Publications 2017

Jérôme Audoux et al.
DE-kupl: exhaustive capture of biological variation in RNA-seq data through k-mer decomposition
Genome Biology 2017, vol. 18, issue 1
doi: 10.1186/s13059-017-1372-2

Gustave Djedatin et al.
DuplicationDetector , a light weight tool for duplication detection using NGS data
Current Plant Biology 2017, vol. 9-10
doi: 10.1016/j.cpb.2017.07.001

Florence Rufflé et al.
New chimeric RNAs in acute myeloid leukemia
F1000Research 2017, vol. 6
doi: 10.12688/f1000research.11352.1

Valentina Boeva et al.
Heterogeneity of neuroblastoma cell identity defined by transcriptional circuitries
Nature Genetics 2017, vol. 49, issue 9
doi: 10.1038/ng.3921

Stéphanie Guey et al.
Rare RNF213 variants in the C-terminal region encompassing the RING-finger domain are associated with moyamoya angiopathy in Caucasians
European Journal of Human Genetics 2017, vol. 25, issue 8
doi: 10.1038/ejhg.2017.92

Alain Meyer et al.
IFN-β-induced reactive oxygen species and mitochondrial damage contribute to muscle impairment and inflammation maintenance in dermatomyositis
Acta Neuropathologica 2017, vol. 134, issue 4
doi: 10.1007/s00401-017-1731-9

Pierre-Antoine Juge et al.
Shared genetic predisposition in rheumatoid arthritis-interstitial lung disease and familial pulmonary fibrosis
European Respiratory Journal 2017, vol. 49, issue 5
doi: 10.1183/13993003.02314-2016

Chaignaud P. et al.
Genomic and transcriptomic analysis of growth-supporting dehalogenation of chlorinated methanes in Methylobacterium.
Front Microbiol. (2017) Se. 8:1600.
doi: 10.3389/fmicb.2017.01600

Galia W. et al.
Strand-specific transcriptomes of Enterohemorrhagic Escherichia coli in response to interactions with ground beef microbiota: interactions between microorganisms in raw meat.
BMC Genomics (2017) Aug.18(1):574.
doi: 10.1186/s12864-017-3957-2

Perrin S. et al.
Aozan: an automated post-sequencing data-processing pipeline.
Bioinformatics (2017) Jul. 33(14):2212-2213.
doi: 10.1093/bioinformatics/btx154

Bringel F. et al.
Genome sequence of the dichloromethane-degrading Bacterium Hyphomicrobium sp. strain GJ21.
Genome Announc. (2017) Jul. 5(30). pii: e00622-17.
doi: 10.1128/genomeA.00622-17

Mauger F. et al.
COLD-PCR technologies in the area of personalized medicine: Methodology and Applications.
Mol Diagn Ther. (2017) Jun. 21(3):269-283.
doi: 10.1007/s40291-016-0254-8

Boyer F. et al.
CSReport: A new computational tool designed for automatic analysis of class switch recombination junctions sequenced by high-throughput sequencing..
J Immunol. (2017) May.198(10):4148-4155.
doi: 10.4049/jimmunol.1601924

Mensous M. et al.
Diversity and evolution of plastomes in Saharan mimosoids:potential use for phylogenetic and population genetic studies.
Tree Genetics Genomes (2017) Apr . 13:48.
doi: 10.1007/s11295-017-1131-2

Zangari J. et al.
Rapid decay of engulfed extracellular miRNA by XRN1 exonuclease promotes transient epithelial-mesenchymal transition.
Nucleic Acids Res. (2017) Apr. 45(7):4131-4141.
doi: 10.1093/nar/gkw1284

Pratlong M. et al.
Evidence for a genetic sex determination in Cnidaria, the Mediterranean red coral (Corallium rubrum).
R. Soc. Open Sci. (2017) Mar. 4(3):160880.
doi: 10.1098/rsos.160880

Bougneres P. et al.
Using spatio-temporal surveillance data to test the infectious environment of children before type 1 diabetes diagnosis.
PLoS One (2017) Feb 2. 12(2):e0170658.
doi: 10.1371/journal.pone.0170658

Mazzitelli J-Y. et al.
De novo transcriptome sequencing and analysis of freshwater snail (Radix balthica) to discover genes and pathways affected by exposure to oxazepam.
Ecotoxicology (2017) Jan. 26: 127–140.
doi: 10.1007/s10646-016-1748-1

Bonan S. et al.
Membrane-bound ICAM-1 contributes to the onset of proinvasive tumor stroma by controlling acto-myosin contractility in carcinoma-associated fibroblasts.
Oncotarget. (2017) Jan. 8(1):1304-1320.
doi: 10.18632/oncotarget.13610

Bruel AL. et al.
Expanding the clinical spectrum of recessive truncating mutations of KLHL7 to a Bohring-Opitz-like phenotype.
J Med Genet. (2017) Dec. 54(12):830-835.
doi: 10.1136/jmedgenet-2017-104748

Tronik-Le Roux D. et al.
Novel landscape of HLA-G isoforms expressed in clear cell renal cell carcinoma patients.
Mol Oncol. (2017) Nov. 11(11):1561-1578.
doi: 10.1002/1878-0261

Ragheb R. et al.
Vorinostat and Mithramycin A in combination therapy as an interesting strategy for the treatment of Sézary T lymphoma: a transcriptomic approach.
Arch Dermatol Res. (2017) Oct. 309(8):611-623.
doi: 10.1007/s00403-017-1761-0

Schmidt MHW. et al.
De novo assembly of a new Solanum pennellii accession using nanopore sequencing.
Plant Cell (2017) Oct. 29(10):2336-2348.
doi: 10.1105/tpc.17.00521

Rochat T. et al.
Genomic characterization of Flavobacterium psychrophilum serotypes and development of a multiplex PCR-based serotyping scheme.
Front in Microbiol.(2017) Sep. 8:1752.
doi: 10.3389/fmicb.2017.01752

Duarte M. et al.
Functional soil metagenomics: elucidation of polycyclic aromatic hydrocarbon degradation potential following 12 years of in situ bioremediation.
Environ Microbiol. (2017) Aug.19(8):2992-3011.
doi: 10.1111/1462-2920.13756

Thierion E. et al.
Krox20 hindbrain regulation incorporates multiple modes of cooperation between cis-acting elements.
PLoS Genet. (2017) Jul. 13(7):e1006903.
doi: 10.1371/journal.pgen.1006903

Dao LTM. et al.
Genome-wide characterization of mammalian promoters with distal enhancer functions.
Nature Genetics. (2017) Jul. 49(7):1073-1081.
doi: 10.1038/ng.3884

Saultier P. et al.
Macrothrombocytopenia and dense granule deficiency associated with FLI1 variants: ultrastructural and pathogenic features.
Haematologica (2017) Jun. 102(6):1006-1016.
doi: 10.3324/haematol.2016.153577

Cerisy T. et al.
Evolution of a biomass-fermenting Bacterium to resist lignin phenolics.
Appl Environ Microbiol. (2017) May. 83(11). pii: e00289-17.
doi: 10.1128/AEM.00289-17

Tarabay Y. et al.
Tex19 paralogs are new members of the piRNA pathway controlling retrotransposon suppression.
J Cell Sci. (2017) Apr. 130(8):1463-1474.
doi: 10.1242/jcs.188763