Publications 2017

Meyer M. et al.
Impact of biotic and abiotic factors on the expression of fungal effector-encoding genes in axenic growth conditions.
Fungal Genet Biol. (2017) Feb. 99:1-12.
doi: 10.1016/j.fgb.2016.12.008

Greenberg MV. et al.
Transient transcription in the early embryo sets an epigenetic state that programs postnatal growth.
Nat Genet. (2017) Jan. 49(1):110-118.
doi: 10.1038/ng.3718

Kebede, AF. et al.
Histone propionylation is a mark of active chromatin.
Nat Struct Mol Biol. (2017) Dec. 24(12):1048-1056.
doi: 10.1038/nsmb.3490

Kocher A. et al.
iDNA screening: disease vectors as vertebrate samplers.
Mol Ecol. (2017) Nov. 26(22):6478-6486.
doi: 10.1111/mec.14362

Machado L. et al.
In situ fixation redefines quiescence and early activation of skeletal muscle stem cells.
Cell Rep. (2017) Nov. 21(7):1982-1993.
doi: 10.1016/j.celrep.2017.10.080

Bal E. et al.
Mutations in ACTRT1 and its enhancer RNA elements lead to aberrant activation of Hedgehog signaling in inherited and sporadic basal cell carcinomas.
Nat Med. (2017) Oct. 23(10):1226-1233.
doi: 10.1038/nm.4368

Argout X. et al.
The cacao Criollo genome v2.0: an improved version of the genome for genetic and functional genomic studies.
BMC Genomics (2017), Sep. 18(1):730.
doi: 10.1186/s12864-017-4120-9

Ghoumid J. et al.
Blepharocheilodontic syndrome is a CDH1 pathway-related disorder due to mutations in CDH1 and CTNND1.
Genet Med. (2017) Sep.19(9):1013-1021.
doi: 10.1038/gim.2017.11

Cabel L. et al.
Circulating tumor DNA changes for early monitoring of anti-PD1 immunotherapy: a proof-of-conceptstudy.
Ann Oncol. (2017) Aug. 28(8):1996-2001.
doi: 10.1093/annonc/mdx212

Cochetel N. et al.
Root transcriptomic responses of grafted grapevines to heterogeneous nitrogen availability depend on rootstock genotype.
J Exp Bot. (2017) Jul. 68(15):4339-4355.
doi: 10.1093/jxb/erx224

Ponzio G. et al.
A new long noncoding RNA (LncRNA) is induced in cutaneous squamous cell carcinoma and downregulates several anticancer and cell-differentiation genes in mouse.
J Biol Chem. (2017) Jul. 292(30):12483-12495.
doi: 10.1074/jbc.M117.776260

Kassambara A. et al.
Global miRNA expression analysis identifies novel key regulators of plasma cell differentiation and malignant plasma cell.
Nucleic Acids Res. (2017) Jun. 45(10):5639-5652.
doi: 10.1093/nar/gkx327

Barral S. et al.
Histone variant H2A.L.2 guides transition protein-dependent protamine assembly in male germ cells .
Molecular Cell (2017) Apr. 66(1):89-101.e8.
doi: 10.1016/j.molcel.2017.02.025

Schartner V. et al.
Dihydropyridine receptor (DHPR, CACNA1S) congenital myopathy.
Acta Neuropathol. (2017) Apr. 133(4):517-533.
doi: 10.1007/s00401-016-1656-8

Gies V. et al.
B cells differentiate in Human thymus and express AIRE.
J Allergy Clin Immunol. (2017) Mar. 139(3):1049-1052.e12.
doi: 10.1016/j.jaci.2016.09.044

Oger al.
Complete genome sequence of the hyperthermophilic Piezophilic Archaeon Pyrococcus kukulkanii NCB100 isolated from the Rebecca's roost hydrothermal vent in the Guaymas basin.
Genome Announc. (2017) Feb. 5(7). pii: e01667-16.
doi: 10.1128/genomeA.01667-16

Castelin M. et al.
Untangling species identity in gastropods with polymorphic shells in the genus Bolma Risso, 1826 (Mollusca, Vetigastropoda).
Eur J Taxon (2017) Feb. 288:1-21.
doi: 10.5852/ejt.2017.288

Zhukova A. et al.
Genome-wide transcriptional start site mapping and sRNA identification in the pathogen Leptospira interrogans.
Front Cell Infect Microbiol. (2017) Jan. 7:10.
doi: 10.3389/fcimb.2017.00010

Lassalle F. et al.
Ancestral genome estimation reveals the history of ecological diversification in Agrobacterium.
Genome Biol Evol. (2017) Dec. 9(12):3413-3431.
doi: 10.1093/gbe/evx255

Cerino M. et al.
Genetic characterization of a French cohort of GNE-mutation negative inclusion body myopathy patients with exome sequencing.
Muscle Nerve (2017) Nov. 56(5):993-997.
doi: 10.1002/mus.25638

Ficko-Blean E. et al.
Carrageenan catabolism is encoded by a complex regulon in marine heterotrophic bacteria.
Nat Commun. (2017) Nov. 8(1):1685.
doi: 10.1038/s41467-017-01832-6

Danchin EGJ. et al.
The transcriptomes of Xiphinema index and Longidorus elongatus suggest independent acquisition of some plant parasitism genes by horizontal gene transfer in early-branching Nematodes.
Genes (2017) Oct. 8(10). pii: E287.
doi: 10.3390/genes8100287

Arrigoni R. et al.
A new sequence data set of SSU rRNA gene for Scleractinia and its phylogenetic and ecological applications.
Mol Ecol Resour. (2017) Sep. 17(5):1054-1071.
doi: 10.1111/1755-0998.12640

Garcia-Seco D. et al.
Transcriptome and proteome analysis reveal new insight into proximal and distal responses of wheat to foliar infection by Xanthomonas translucens.
Sci Rep. (2017) Aug.7(1):10157.
doi: 10.1038/s41598-017-10568-8

Morchikh M. et al.
HEXIM1 and NEAT1 long non-coding RNA form a multi-subunit complex that regulates DNA-mediated innate immune response.
Mol Cell. (2017) Aug. 67(3):387-399.e5.
doi: 10.1016/j.molcel.2017.06.020

Czimmerer Z. et al.
Extensive and functional overlap of the STAT6 and RXR cistromes in the active enhancer repertoire of human CD14+ monocyte derived differentiating macrophages.
Mol Cell Endocrinol. (2017) Jul. pii: S0303-7207(17)30414-8.
doi: 10.1016/j.mce.2017.07.034

Badouin H. et al.
The sunflower genome provides insights into oil metabolism, flowering and Asterid evolution.
Nature (2017) Jun. 546:148–152.
doi: 10.1038/nature22380

Jegu T. et al.
The Arabidopsis SWI/SNF protein BAF60 mediates seedling growth control by modulating DNA accessibility.
Genome Biol. (2017) Jun. 18(1):114.
doi: 10.1186/s13059-017-1246-7

Eckenfelder A. et al.
Argonaute proteins regulate HIV-1 multiply spliced RNA and viral production in a Dicer independent manner.
Nucleic Acids Res. (2017) Apr. 45(7):4158-4173.
doi: 10.1093/nar/gkw1289

Suchon P. et al.
Protein S Heerlen mutation heterozygosity is associated with venous thrombosis risk.
Sci Rep. (2017) Apr. 7:45507.
doi: 10.1038/srep45507