Publications 2017

Istace B. et al.
De novo assembly and population genomic survey of natural yeast isolates with the Oxford Nanopore MinION sequencer.
Gigascience (2017) Feb. 6(2):1-13.
doi: 10.10 93/gigascience/giw018

Pancrace C. et al.
Insights into the Planktothrix genus: Genomic and metabolic comparison of benthic and planktic strains.
Sci Rep. (2017) Jan. 7:41181.
doi: 10.1038/srep41181

Adam IKU. et al.
Microbial communities in pyrene amended soil-compost mixture and fertilized soil.
AMB Express (2017) Dec.7(1):7.
doi: 10.1186/s13568-016-0306-9

Fleischer T. et al.
DNA methylation at enhancers identifies distinct breast cancer lineages.
Nat Commun. (2017) Nov. 8(1):1379.
doi: 10.1038/s41467-017-00510-x

Zarif H. et al.
CD8(+) T cells are essential for the effects of enriched environment on hippocampus-dependent behavior, hippocampal neurogenesis and synaptic plasticity.
Brain Behav Immun. (2017) Nov. pii: S0889-1591(17)30517-2.
doi: 10.1016/j.bbi.2017.11.016

Fournier T. et al.
High-Quality de novo genome assembly of the Dekkera bruxellensis yeast using nanopore MinION sequencing.
G3 (2017) Oct. 7(10):3243-3250.
doi: 10.1534/g3.117.300128

Madoui MA. et al.
New insights into global biogeography, population structure and natural selection from the genome of the epipelagic copepod Oithona.
Mol Ecol. (2017) Sep. 26(17):4467-4482.
doi: 10.1111/mec.14214

Alberti A. et al.
Viral to metazoan marine plankton nucleotide sequences from the Tara Oceans expedition.
Scientific Data (2017) Aug. 4, e170093,
doi: 10.1038/sdata.2017.93

Baratin M. et al.
T Cell zone resident macrophages silently dispose of apoptotic cells in the lymph node.
Immunity (2017) Aug. 47(2):349-362.e5.
doi: 10.1016/j.immuni.2017.07.019

Echaniz-Laguna A. et al.
HSPB8 haploinsufficiency causes dominant adult-onset axial and distal myopathy.
Acta Neuropathol. (2017) Jul.134(1):163-165.
doi: 10.1007/s00401-017-1724-8

Bruel AL. et al.
Fifteen years of research on oral-facial-digital syndromes: from 1 to 16 causal genes.
J Med Genet. (2017) Jun. 54(6):371-380.
doi: 10.1136/jmedgenet-2016-104436

Papin C. et al.
Combinatorial DNA methylation codes at repetitive elements.
Genome Res. (2017) Jun. 27(6):934-946.
doi: 10.1101/gr.213983.116

Faucon F. et al.
In the hunt for genomic markers of metabolic resistance to pyrethroids in the mosquito Aedes aegypti: An integrated next-generation sequencing approach.
PLoS Negl. Trop. Dis. (2017) Apr. 11(4):e0005526.
doi: 10.1371/journal.pntd.0005526

Tost J. et al.
Epigenetics of the immune system and alterations in inflammation and autoimmunity Foreword.
Epigenomics (2017) Apr. 9(4):371-373.
doi: 10.2217/epi-2017-0026

Bussard A. et al.
Physiological adjustments and transcriptome reprogramming are involved in the acclimation to salinity gradients in diatoms:
Environmental Microbiol. (2017) Mar. 19(3):909-925.
doi: 10.1111/1462-2920.13398

Bourgeois YXC. et al.
A novel locus on chromosome 1 underlies the evolution of a melanic plumage polymorphism in a wild songbird.
R Soc Open Sci. (2017) Feb. 4(2):160805.
doi: 10.1098/rsos.160805

Sierra B. et al.
OSBPL10, RXRA and lipid metabolism confer African-ancestry protection against dengue haemorrhagic fever in admixed Cubans.
PLoS Pathog. (2017) Feb. 13(2):e1006220.
doi: 10.1371/journal.ppat.1006220

Ebenau-Jehle C. et al.
An unusual strategy for the anoxic biodegradation of phthalate.
ISME J. (2017) Jan.11(1):224-236.
doi: 10.1038/ismej.2016.91

Terrat S. et al.
Correction: Mapping and predictive variations of soil bacterial richness across France.
PLoS One (2017) Dec. 12(12):e0190128.
doi: 10.1371/journal.pone.0190128

Letouze E. et al.
Mutational signatures reveal the dynamic interplay of risk factors and cellular processes during liver tumorigenesis.
Nat Commun. (2017) Nov. 8(1):1315.
doi: 10.1038/s41467-017-01358-x

Milet C. et al.
Egr1 deficiency induces browning of inguinal subcutaneous white adipose tissue in mice.
Sci. Rep. (2017) Nov. 7(1):16153.
doi: 10.1038/s41598-017-16543-7

Gervais J. et al.
Different waves of effector genes with contrasted genomic location are expressed by Leptosphaeria maculans during cotyledon and stem colonization of oilseed rape.
Mol Plant Pathol. (2017) Oct. 18(8):1113-1126.
doi: 10.1111/mpp.12464

Martin G. et al.
Evolution of the Banana genome (Musa acuminata) is Impacted by large chromosomal translocations.
Mol Biol Evol. (2017) Sep. 34(9):2140-2152.
doi: 10.1093/molbev/msx164

Galia W. et al.
Strand-specific transcriptomes of Enterohemorrhagic Escherichia coli in response to interactions with ground beef microbiota: interactions between microorganisms in raw meat.
BMC Genomics (2017) Aug. 18(1):574.
doi: 10.1186/s12864-017-3957-2

Blanc-Mathieu R. et al.
Population genomics of picophytoplankton unveils novel chromosome hypervariability.
Sci Adv. (2017) Jul. 3(7): e1700239.
doi: 10.1126/sciadv.1700239

Engel M. et al.
Influence of lung CT changes in chronic obstructive pulmonary disease (COPD) on the human lung microbiome.
PLoS One (2017) Jul. 12(7):e0180859.
doi: 10.1371/journal.pone.0180859

Pincez T. et al.
Feasibility and clinical integration of molecular profiling for target identification in pediatric solid tumors.
Pediatr Blood Cancer (2017) Jun. 64(6).
doi: 10.1002/pbc.26365

Contrepois K. et al.
Histone variant H2A.J accumulates in senescent cells and promotes inflammatory gene expression.
Nat Commun. (2017) May. 8:14995.
doi: 10.1038/ncomms14995

Marchetti M. et al.
Experimental evolution of rhizobia may lead to either extra- or intracellular symbiotic adaptation depending on the selection regime.
Mol. Ecol. (2017) Apr. 26(7):1818-1831.
doi: 10.1111/mec.13895

Leroy T. et al.
Extensive recent secondary contacts between four European white oak species.
New Phytol. (2017) Apr. 214(2):865-878.
doi: 10.1111/nph.14413