Publications 2017
Jérôme Audoux et al.
DE-kupl: exhaustive capture of biological variation in RNA-seq data through k-mer decomposition
Genome Biology 2017, vol. 18, issue 1
doi: 10.1186/s13059-017-1372-2
Gustave Djedatin et al.
DuplicationDetector , a light weight tool for duplication detection using NGS data
Current Plant Biology 2017, vol. 9-10
doi: 10.1016/j.cpb.2017.07.001
Florence Rufflé et al.
New chimeric RNAs in acute myeloid leukemia
F1000Research 2017, vol. 6
doi: 10.12688/f1000research.11352.1
Valentina Boeva et al.
Heterogeneity of neuroblastoma cell identity defined by transcriptional circuitries
Nature Genetics 2017, vol. 49, issue 9
doi: 10.1038/ng.3921
Stéphanie Guey et al.
Rare RNF213 variants in the C-terminal region encompassing the RING-finger domain are associated with moyamoya angiopathy in Caucasians
European Journal of Human Genetics 2017, vol. 25, issue 8
doi: 10.1038/ejhg.2017.92
Alain Meyer et al.
IFN-β-induced reactive oxygen species and mitochondrial damage contribute to muscle impairment and inflammation maintenance in dermatomyositis
Acta Neuropathologica 2017, vol. 134, issue 4
doi: 10.1007/s00401-017-1731-9
Pierre-Antoine Juge et al.
Shared genetic predisposition in rheumatoid arthritis-interstitial lung disease and familial pulmonary fibrosis
European Respiratory Journal 2017, vol. 49, issue 5
doi: 10.1183/13993003.02314-2016
Adam IKU. et al.
Microbial communities in pyrene amended soil-compost mixture and fertilized soil.
AMB Express (2017) Dec.7(1):7.
doi: 10.1186/s13568-016-0306-9
Fleischer T. et al.
DNA methylation at enhancers identifies distinct breast cancer lineages.
Nat Commun. (2017) Nov. 8(1):1379.
doi: 10.1038/s41467-017-00510-x
Zarif H. et al.
CD8(+) T cells are essential for the effects of enriched environment on hippocampus-dependent behavior, hippocampal neurogenesis and synaptic plasticity.
Brain Behav Immun. (2017) Nov. pii: S0889-1591(17)30517-2.
doi: 10.1016/j.bbi.2017.11.016
Fournier T. et al.
High-Quality de novo genome assembly of the Dekkera bruxellensis yeast using nanopore MinION sequencing.
G3 (2017) Oct. 7(10):3243-3250.
doi: 10.1534/g3.117.300128
Madoui MA. et al.
New insights into global biogeography, population structure and natural selection from the genome of the epipelagic copepod Oithona.
Mol Ecol. (2017) Sep. 26(17):4467-4482.
doi: 10.1111/mec.14214
Alberti A. et al.
Viral to metazoan marine plankton nucleotide sequences from the Tara Oceans expedition.
Scientific Data (2017) Aug. 4, e170093,
doi: 10.1038/sdata.2017.93
Baratin M. et al.
T Cell zone resident macrophages silently dispose of apoptotic cells in the lymph node.
Immunity (2017) Aug. 47(2):349-362.e5.
doi: 10.1016/j.immuni.2017.07.019
Echaniz-Laguna A. et al.
HSPB8 haploinsufficiency causes dominant adult-onset axial and distal myopathy.
Acta Neuropathol. (2017) Jul.134(1):163-165.
doi: 10.1007/s00401-017-1724-8
Bruel AL. et al.
Fifteen years of research on oral-facial-digital syndromes: from 1 to 16 causal genes.
J Med Genet. (2017) Jun. 54(6):371-380.
doi: 10.1136/jmedgenet-2016-104436
Papin C. et al.
Combinatorial DNA methylation codes at repetitive elements.
Genome Res. (2017) Jun. 27(6):934-946.
doi: 10.1101/gr.213983.116
Faucon F. et al.
In the hunt for genomic markers of metabolic resistance to pyrethroids in the mosquito Aedes aegypti: An integrated next-generation sequencing approach.
PLoS Negl. Trop. Dis. (2017) Apr. 11(4):e0005526.
doi: 10.1371/journal.pntd.0005526
Tost J. et al.
Epigenetics of the immune system and alterations in inflammation and autoimmunity Foreword.
Epigenomics (2017) Apr. 9(4):371-373.
doi: 10.2217/epi-2017-0026
Bussard A. et al.
Physiological adjustments and transcriptome reprogramming are involved in the acclimation to salinity gradients in diatoms:
Environmental Microbiol. (2017) Mar. 19(3):909-925.
doi: 10.1111/1462-2920.13398
Bourgeois YXC. et al.
A novel locus on chromosome 1 underlies the evolution of a melanic plumage polymorphism in a wild songbird.
R Soc Open Sci. (2017) Feb. 4(2):160805.
doi: 10.1098/rsos.160805
Sierra B. et al.
OSBPL10, RXRA and lipid metabolism confer African-ancestry protection against dengue haemorrhagic fever in admixed Cubans.
PLoS Pathog. (2017) Feb. 13(2):e1006220.
doi: 10.1371/journal.ppat.1006220
Ebenau-Jehle C. et al.
An unusual strategy for the anoxic biodegradation of phthalate.
ISME J. (2017) Jan.11(1):224-236.
doi: 10.1038/ismej.2016.91
Terrat S. et al.
Correction: Mapping and predictive variations of soil bacterial richness across France.
PLoS One (2017) Dec. 12(12):e0190128.
doi: 10.1371/journal.pone.0190128
Letouze E. et al.
Mutational signatures reveal the dynamic interplay of risk factors and cellular processes during liver tumorigenesis.
Nat Commun. (2017) Nov. 8(1):1315.
doi: 10.1038/s41467-017-01358-x
Milet C. et al.
Egr1 deficiency induces browning of inguinal subcutaneous white adipose tissue in mice.
Sci. Rep. (2017) Nov. 7(1):16153.
doi: 10.1038/s41598-017-16543-7
Gervais J. et al.
Different waves of effector genes with contrasted genomic location are expressed by Leptosphaeria maculans during cotyledon and stem colonization of oilseed rape.
Mol Plant Pathol. (2017) Oct. 18(8):1113-1126.
doi: 10.1111/mpp.12464
Martin G. et al.
Evolution of the Banana genome (Musa acuminata) is Impacted by large chromosomal translocations.
Mol Biol Evol. (2017) Sep. 34(9):2140-2152.
doi: 10.1093/molbev/msx164
Galia W. et al.
Strand-specific transcriptomes of Enterohemorrhagic Escherichia coli in response to interactions with ground beef microbiota: interactions between microorganisms in raw meat.
BMC Genomics (2017) Aug. 18(1):574.
doi: 10.1186/s12864-017-3957-2
Blanc-Mathieu R. et al.
Population genomics of picophytoplankton unveils novel chromosome hypervariability.
Sci Adv. (2017) Jul. 3(7): e1700239.
doi: 10.1126/sciadv.1700239