Publications 2017

Jérôme Audoux et al.
DE-kupl: exhaustive capture of biological variation in RNA-seq data through k-mer decomposition
Genome Biology 2017, vol. 18, issue 1
doi: 10.1186/s13059-017-1372-2

Gustave Djedatin et al.
DuplicationDetector , a light weight tool for duplication detection using NGS data
Current Plant Biology 2017, vol. 9-10
doi: 10.1016/j.cpb.2017.07.001

Florence Rufflé et al.
New chimeric RNAs in acute myeloid leukemia
F1000Research 2017, vol. 6
doi: 10.12688/f1000research.11352.1

Valentina Boeva et al.
Heterogeneity of neuroblastoma cell identity defined by transcriptional circuitries
Nature Genetics 2017, vol. 49, issue 9
doi: 10.1038/ng.3921

Stéphanie Guey et al.
Rare RNF213 variants in the C-terminal region encompassing the RING-finger domain are associated with moyamoya angiopathy in Caucasians
European Journal of Human Genetics 2017, vol. 25, issue 8
doi: 10.1038/ejhg.2017.92

Alain Meyer et al.
IFN-β-induced reactive oxygen species and mitochondrial damage contribute to muscle impairment and inflammation maintenance in dermatomyositis
Acta Neuropathologica 2017, vol. 134, issue 4
doi: 10.1007/s00401-017-1731-9

Pierre-Antoine Juge et al.
Shared genetic predisposition in rheumatoid arthritis-interstitial lung disease and familial pulmonary fibrosis
European Respiratory Journal 2017, vol. 49, issue 5
doi: 10.1183/13993003.02314-2016

Terrat S. et al.
Correction: Mapping and predictive variations of soil bacterial richness across France.
PLoS One (2017) Dec. 12(12):e0190128.
doi: 10.1371/journal.pone.0190128

Letouze E. et al.
Mutational signatures reveal the dynamic interplay of risk factors and cellular processes during liver tumorigenesis.
Nat Commun. (2017) Nov. 8(1):1315.
doi: 10.1038/s41467-017-01358-x

Milet C. et al.
Egr1 deficiency induces browning of inguinal subcutaneous white adipose tissue in mice.
Sci. Rep. (2017) Nov. 7(1):16153.
doi: 10.1038/s41598-017-16543-7

Gervais J. et al.
Different waves of effector genes with contrasted genomic location are expressed by Leptosphaeria maculans during cotyledon and stem colonization of oilseed rape.
Mol Plant Pathol. (2017) Oct. 18(8):1113-1126.
doi: 10.1111/mpp.12464

Martin G. et al.
Evolution of the Banana genome (Musa acuminata) is Impacted by large chromosomal translocations.
Mol Biol Evol. (2017) Sep. 34(9):2140-2152.
doi: 10.1093/molbev/msx164

Galia W. et al.
Strand-specific transcriptomes of Enterohemorrhagic Escherichia coli in response to interactions with ground beef microbiota: interactions between microorganisms in raw meat.
BMC Genomics (2017) Aug. 18(1):574.
doi: 10.1186/s12864-017-3957-2

Blanc-Mathieu R. et al.
Population genomics of picophytoplankton unveils novel chromosome hypervariability.
Sci Adv. (2017) Jul. 3(7): e1700239.
doi: 10.1126/sciadv.1700239

Engel M. et al.
Influence of lung CT changes in chronic obstructive pulmonary disease (COPD) on the human lung microbiome.
PLoS One (2017) Jul. 12(7):e0180859.
doi: 10.1371/journal.pone.0180859

Pincez T. et al.
Feasibility and clinical integration of molecular profiling for target identification in pediatric solid tumors.
Pediatr Blood Cancer (2017) Jun. 64(6).
doi: 10.1002/pbc.26365

Contrepois K. et al.
Histone variant H2A.J accumulates in senescent cells and promotes inflammatory gene expression.
Nat Commun. (2017) May. 8:14995.
doi: 10.1038/ncomms14995

Marchetti M. et al.
Experimental evolution of rhizobia may lead to either extra- or intracellular symbiotic adaptation depending on the selection regime.
Mol. Ecol. (2017) Apr. 26(7):1818-1831.
doi: 10.1111/mec.13895

Leroy T. et al.
Extensive recent secondary contacts between four European white oak species.
New Phytol. (2017) Apr. 214(2):865-878.
doi: 10.1111/nph.14413

Boulay AC. et al.
Translation in astrocyte distal processes sets molecular heterogeneity at the gliovascular interface.
Cell Discov. (2017) Mar. 3:17005.
doi: 10.1038/celldisc.2017.5

Cabau C. et al.
Compacting and correcting Trinity and Oases RNA-Seq de novo assemblies.
PeerJ. (2017) Feb. 5: e2988.
doi: 10.7717/peerj.2988

Witkowski B. et al.
A surrogate marker of piperaquine-resistant Plasmodium falciparum malaria: a phenotype-genotype association study.
Lancet Infect Dis. (2017) Feb. 17(2):174-183.
doi: 10.1016/S1473-3099(16)30415-7

Monat C. et al.
De novo assemblies of three Oryza glaberrima accessions provide first insights about pan-genome of african rices.
Genome Biol Evol. (2017) Jan 1. 9(1):1-6.
doi: 10.1093/gbe/evw253

Pham N-P. et al.
Comparative genomic analysis of Brevibacterium strains: insights into key genetic determinants involved in adaptation to the cheese habitat.
BMC Genomics (2017) Dec. 18(1):955.
doi: 10.1186/s12864-017-4322-1

Machiela MJ. et al.
Genetic variants related to longer telomere length are associated with increased risk of Renal Cell Carcinoma.
Europ. Urol. (2017) Nov. 72 (5): 747-754
doi: 10.1016/j.eururo.2017.07.015

Medina C. et al.
Characterization of microRNAs from Arabidopsis galls highlights a role for miR159 in the plant response to the root-knot nematode Meloidogyne incognita.
New Phytol. (2017) Nov. 216(3):882-896.
doi: 10.1111/nph.14717

Lanaud C. et al.
Deciphering the Theobroma cacao self-incompatibility system: from genomics to diagnostic markers for self-compatibility.
J Exp Bot. (2017) Oct. 68(17):4775-4790.
doi: 10.1093/jxb/erx293

Ivanova ELet al.
Homozygous truncating variants in TBC1D23 cause Pontocerebellar Hypoplasia and alter cortical development.
Am J Hum Genet. (2017) Sep. 101(3):428-440.
doi: 10.1016/j.ajhg.2017.07.010

Dickson LB. et al.
Carryover effects of larval exposure to different environmental bacteria drive adult trait variation in a mosquito vector.
Sci Adv (2017) Aug. 3(8):e1700585.
doi: 10.1126/sciadv.1700585.

Bellenguez C. et al.
Contribution to Alzheimer's disease risk of rare variants in TREM2, SORL1, and ABCA7 in 1779 cases and 1273 controls.
Neurobiol. Aging (2017) Jul. pii: S0197-4580(17)30232-4.
doi: 10.1016/j.neurobiolaging.2017.07.001