Publications 2017

Jérôme Audoux et al.
DE-kupl: exhaustive capture of biological variation in RNA-seq data through k-mer decomposition
Genome Biology 2017, vol. 18, issue 1
doi: 10.1186/s13059-017-1372-2

Gustave Djedatin et al.
DuplicationDetector , a light weight tool for duplication detection using NGS data
Current Plant Biology 2017, vol. 9-10
doi: 10.1016/j.cpb.2017.07.001

Florence Rufflé et al.
New chimeric RNAs in acute myeloid leukemia
F1000Research 2017, vol. 6
doi: 10.12688/f1000research.11352.1

Valentina Boeva et al.
Heterogeneity of neuroblastoma cell identity defined by transcriptional circuitries
Nature Genetics 2017, vol. 49, issue 9
doi: 10.1038/ng.3921

Stéphanie Guey et al.
Rare RNF213 variants in the C-terminal region encompassing the RING-finger domain are associated with moyamoya angiopathy in Caucasians
European Journal of Human Genetics 2017, vol. 25, issue 8
doi: 10.1038/ejhg.2017.92

Alain Meyer et al.
IFN-β-induced reactive oxygen species and mitochondrial damage contribute to muscle impairment and inflammation maintenance in dermatomyositis
Acta Neuropathologica 2017, vol. 134, issue 4
doi: 10.1007/s00401-017-1731-9

Pierre-Antoine Juge et al.
Shared genetic predisposition in rheumatoid arthritis-interstitial lung disease and familial pulmonary fibrosis
European Respiratory Journal 2017, vol. 49, issue 5
doi: 10.1183/13993003.02314-2016

Kocher A. et al.
High-throughput sequencing of kDNA amplicons for the analysis of Leishmania minicircles and identification of Neotropical species.
Parasitology (2017) Nov: 1-8.
doi: 10.1017/S0031182017002013

Abath Neto O. et al.
Common and variable clinical, histological, and imaging findings of recessive RYR1-related centronuclear myopathy patients.
Neuromuscul Disord. (2017) Nov. 27(11):975-985.
doi: 10.1016/j.nmd.2017.05.016

Martins RM. et al.
An ApiAP2 member regulates expression of clonally variant genes of the human malaria parasite Plasmodium falciparum.
Sci Rep. (2017) Oct.7(1):14042.
doi: 10.1038/s41598-017-12578-y

Cohen-Boulakia S. et al.
Scientific workflows for computational reproducibility in the life sciences: Status, challenges and opportunities.
Future Generation Computer Systems (2017) Oct. 75:284-298.
doi: 10.1016/j.future.2017.01.012

Goudot C. et al.
Aryl Hydrocarbon receptor controls monocyte differentiation into dendritic cells versus macrophages.
Immunity (2017) Sep. 47(3):582-596.e6.
doi: 10.1016/j.immuni.2017.08.016

Pierron D. et al.
Genomic landscape of human diversity across Madagascar.
Proc Natl Acad Sci U S A (2017) Aug. 114(32):E6498-E6506.
doi: 10.1073/pnas

Fariello MI. et al.
Accounting for linkage disequilibrium in genome scans for selection without individual genotypes: The local score approach.
Mol Ecol. (2017) Jul. 26(14):3700-3714.
doi: 10.1111/mec.14141

Blanc-Mathieu R. et al.
Hybridization and polyploidy enable genomic plasticity without sex in the most devastating plant-parasitic nematodes.
Plos Genetics (2017) Jun . 13 (6), e1006777,
doi: 10.1371/journal.pgen.1006777

Fragoso CA. et al.
Genetic architecture of a rice nested association mapping population.
G3 (2017) Jun. 7(6):1913-1926.
doi: 10.1534/g3.117.041608

Fabre E. et al.
Noumeavirus replication relies on a transient remote control of the host nucleus.
Nat Commun. (2017) Apr. 8:15087.
doi: 10.1038/ncomms15087

Mercati O. et al.
CNTN6 mutations are risk factors for abnormal auditory sensory perception in autism spectrum disorders.
Mol Psychiatry (2017) Apr. 22(4):625-633.
doi: 10.1038/mp.2016.61

Coluzzi al.
A glimpse into the world of integrative and mobilizable elements in Streptococci reveals an unexpected diversity and novel families of mobilization proteins.
Front Microbiol. (2017) Mar. 8:443.
doi: 10.3389/fmicb.2017.00443

Mouammine A. et al.
An antimicrobial peptide-resistant minor subpopulation of Photorhabdus luminescens is responsible for virulence.
Sci Rep. (2017) Mar. 7:43670.
doi: 10.1038/srep43670

Thomas C. et al.
Rapid transcriptional plasticity of duplicated gene clusters enables a clonally reproducing aphid to colonise diverse plant species.
Genome Biology (2017) Feb. 18 (1): 27.
doi: 10.1186/s13059-016-1145-3

Neto OA. et al.
Nonlethal CHRNA1-related congenital Myasthenic Syndrome with a homozygous null mutation.
Canadian Journal of Neurological Sciences (2017) Jan. 44 (1):125-127
doi: 10.1017/cjn.2016.322

Epanchintsev A. et al.
Cockayne's syndrome A and B proteins regulate transcription arrest after genotoxic stress by promoting ATF3 degradation.
Mol Cell (2017) Dec. 68(6):1054-1066 e6.
doi: 10.1016/j.molcel.2017.11.009

Ennen, M. et al.
MITF-High and MITF-Low cells and a novel subpopulation expressing genes of both cell states contribute to intra- and intertumoral heterogeneity of Primary Melanoma.
Clin Cancer Res. (2017) Nov. 23(22): 7097-7107.
doi: 10.1158/1078-0432.CCR-17-0010

Salmier A. et al.
Virome analysis of two sympatric bat species (Desmodus rotundus and Molossus molossus) in French Guiana.
PLoS One (2017) Nov. 12(11):e0186943.
doi: 10.1371/journal.pone.0186943

Cabanel N. et al.
Molecular bases for multidrug resistance in Yersinia pseudotuberculosis.
Int J Med Microbiol. (2017) Oct. 307(7):371-381.
doi: 10.1016/j.ijmm.2017.08.005

Ivanova C. et al.
Genome sequencing and transcriptome analysis of Trichoderma reesei QM9978 strain reveals a distal chromosome translocation to be responsible for loss of vib1 expression and loss of cellulase induction.
Biotechnology for Biofuels (2017) Sep. 10:209.
doi: 10.1186/s13068-017-0897-7

Bonnet A. et al.
Quaking RNA-binding proteins control early myofibril formation by modulating Tropomyosin.
Dev Cell. (2017) Sep. 42(5):527-541.e4.
doi: 10.1016/j.devcel.2017.08.004

Simandi Z. et al.
RXR heterodimers orchestrate transcriptional control of neurogenesis and cell fate specification.
Mol Cell Endocrinol. (2017) Aug. pii: S0303-7207(17)30413-6.
doi: 10.1016/j.mce.2017.07.033

Mach N. et al.
The effects of weaning methods on gut microbiota composition and Horse physiology.
Front Physiol. (2017) Jul. 8:535.
doi: 10.3389/fphys.2017.00535