Publications 2017

Jérôme Audoux et al.
DE-kupl: exhaustive capture of biological variation in RNA-seq data through k-mer decomposition
Genome Biology 2017, vol. 18, issue 1
doi: 10.1186/s13059-017-1372-2

Gustave Djedatin et al.
DuplicationDetector , a light weight tool for duplication detection using NGS data
Current Plant Biology 2017, vol. 9-10
doi: 10.1016/j.cpb.2017.07.001

Florence Rufflé et al.
New chimeric RNAs in acute myeloid leukemia
F1000Research 2017, vol. 6
doi: 10.12688/f1000research.11352.1

Valentina Boeva et al.
Heterogeneity of neuroblastoma cell identity defined by transcriptional circuitries
Nature Genetics 2017, vol. 49, issue 9
doi: 10.1038/ng.3921

Stéphanie Guey et al.
Rare RNF213 variants in the C-terminal region encompassing the RING-finger domain are associated with moyamoya angiopathy in Caucasians
European Journal of Human Genetics 2017, vol. 25, issue 8
doi: 10.1038/ejhg.2017.92

Alain Meyer et al.
IFN-β-induced reactive oxygen species and mitochondrial damage contribute to muscle impairment and inflammation maintenance in dermatomyositis
Acta Neuropathologica 2017, vol. 134, issue 4
doi: 10.1007/s00401-017-1731-9

Pierre-Antoine Juge et al.
Shared genetic predisposition in rheumatoid arthritis-interstitial lung disease and familial pulmonary fibrosis
European Respiratory Journal 2017, vol. 49, issue 5
doi: 10.1183/13993003.02314-2016

Biancalana V. et al.
Affected female carriers of MTM1 mutations display a wide spectrum of clinical and pathological involvement: delineating diagnostic clues.
Acta Neuropathol. (2017) Dec. 134(6):889-904.
doi: 10.1007/s00401-017-1748-0

Manes G. et al.
A novel duplication of PRMD13 causes North Carolina macular dystrophy: overexpression of PRDM13 orthologue in drosophila eye reproduces the human phenotype.
Hum Mol Genet. (2017) Nov. 26(22):4367-4374.
doi: 10.1093/hmg/ddx322

Ragheb R. et al.
Interplay between trauma and Pseudomonas entomophila infection in flies: a central role of the JNK pathway and CrebA.
Sci Rep. (2017) Nov. 7(1):16222.
doi: 10.1038/s41598-017-14969-7

Recanati A. et al.
A spectral algorithm for fast de novo layout of uncorrected long nanopore reads.
Bioinformatics (2017) Oct. 33(20):3188-3194.
doi: 10.1093/bioinformatics/btx370

Su XP. et al.
NSD1 inactivation and SETD2 mutation drive a convergence toward loss of function of H3K36 writers in Clear Cell Renal Cell Carcinomas.
Cancer Res. (2017) Sept. 77 (18): 4835-4845
doi: 10.1158/0008-5472.CAN-17-0143

Hervé M. et al.
Translational identification of transcriptional signatures of major depression and antidepressant response.
Front. Mol. in Neuroscience. (2017) Aug. 10:248.
doi: 10.3389/fnmol.2017.00248

Niewiadomska-Cimicka A. et al.
Genome-wide analysis of RARbeta transcriptional targets in Mouse striatum links retinoic acid signaling with Huntington's disease and other neurodegenerative disorders.
Mol Neurobiol. (2017) Jul. 54(5):3859-3878.
doi: 10.1007/s12035-016-0010-4

Tirera S. et al.
Unraveling the genetic diversity and phylogeny of Leishmania RNA virus 1 strains of infected Leishmania isolates circulating in French Guiana.
PLoS Negl Trop Dis. (2017) Jul.11(7):e0005764
doi: 10.1371/journal.pntd.0005764

Louveau B. et al.
Clinical value of early detection of circulating tumour DNA-BRAFV600mut in patients with metastatic melanoma treated with a BRAF inhibitor.
ESMO Open. (2017) Jun. 2(2):e000173.
doi: 10.1136/esmoopen-2017-000173

Haziza S. et al.
Fluorescent nanodiamond tracking reveals intraneuronal transport abnormalities induced by brain-disease-related genetic risk factors.
Nat Nanotechnol. (2017) May. 12(4):322-328.
doi: 10.1038/nnano.2016.260

Erill I. et al.
Comparative analysis of Ralstonia solanacearum methylomes.
Front Plant Sci. (2017) Apr. 8: 504.
doi: 10.3389/fpls.2017.00504

Portoso M. et al.
PRC2 is dispensable for HOTAIR-mediated transcriptional repression.
EMBO J. (2017) Apr. 36(8):981-994.
doi: 10.15252/embj.201695335

Bournaud C. et al.
Paraburkholderia piptadeniae sp. nov. and Paraburkholderia ribeironis sp. nov., two root-nodulating symbiotic species of Piptadenia gonoacantha in Brazil.
Int J Syst Evol Microbiol. (2017) 67(2):432-440.
doi: 10.1099/ijsem.0.001648

Paban V. et al.
Omics analysis of mouse brain models of human diseases.
Gene (2017) Feb. 600:90-100.
doi: 10.1016/j.gene.2016.11.022

Le Gras S. et al.
Altered enhancer transcription underlies Huntington's disease striatal transcriptional signature.
Sci Rep. (2017) Feb. 7:42875.
doi: 10.1038/srep42875

Vallenet D. et al.
MicroScope in 2017: an expanding and evolving integrated resource for community expertise of microbial genomes.
Nucleic Acids Res. (2017) Jan. 45(D1):D517-D528.
doi: 10.1093/nar/gkw1101

Bruel AL. et al.
Expanding the clinical spectrum of recessive truncating mutations of KLHL7 to a Bohring-Opitz-like phenotype.
J Med Genet. (2017) Dec. 54(12):830-835.
doi: 10.1136/jmedgenet-2017-104748

Tronik-Le Roux D. et al.
Novel landscape of HLA-G isoforms expressed in clear cell renal cell carcinoma patients.
Mol Oncol. (2017) Nov. 11(11):1561-1578.
doi: 10.1002/1878-0261

Ragheb R. et al.
Vorinostat and Mithramycin A in combination therapy as an interesting strategy for the treatment of Sézary T lymphoma: a transcriptomic approach.
Arch Dermatol Res. (2017) Oct. 309(8):611-623.
doi: 10.1007/s00403-017-1761-0

Schmidt MHW. et al.
De novo assembly of a new Solanum pennellii accession using nanopore sequencing.
Plant Cell (2017) Oct. 29(10):2336-2348.
doi: 10.1105/tpc.17.00521

Chaignaud P. et al.
Genomic and transcriptomic analysis of growth-supporting dehalogenation of chlorinated methanes in Methylobacterium.
Front Microbiol. (2017) Se. 8:1600.
doi: 10.3389/fmicb.2017.01600

Galia W. et al.
Strand-specific transcriptomes of Enterohemorrhagic Escherichia coli in response to interactions with ground beef microbiota: interactions between microorganisms in raw meat.
BMC Genomics (2017) Aug.18(1):574.
doi: 10.1186/s12864-017-3957-2

Perrin S. et al.
Aozan: an automated post-sequencing data-processing pipeline.
Bioinformatics (2017) Jul. 33(14):2212-2213.
doi: 10.1093/bioinformatics/btx154