Publications 2017

Jérôme Audoux et al.
DE-kupl: exhaustive capture of biological variation in RNA-seq data through k-mer decomposition
Genome Biology 2017, vol. 18, issue 1
doi: 10.1186/s13059-017-1372-2

Gustave Djedatin et al.
DuplicationDetector , a light weight tool for duplication detection using NGS data
Current Plant Biology 2017, vol. 9-10
doi: 10.1016/j.cpb.2017.07.001

Florence Rufflé et al.
New chimeric RNAs in acute myeloid leukemia
F1000Research 2017, vol. 6
doi: 10.12688/f1000research.11352.1

Valentina Boeva et al.
Heterogeneity of neuroblastoma cell identity defined by transcriptional circuitries
Nature Genetics 2017, vol. 49, issue 9
doi: 10.1038/ng.3921

Stéphanie Guey et al.
Rare RNF213 variants in the C-terminal region encompassing the RING-finger domain are associated with moyamoya angiopathy in Caucasians
European Journal of Human Genetics 2017, vol. 25, issue 8
doi: 10.1038/ejhg.2017.92

Alain Meyer et al.
IFN-β-induced reactive oxygen species and mitochondrial damage contribute to muscle impairment and inflammation maintenance in dermatomyositis
Acta Neuropathologica 2017, vol. 134, issue 4
doi: 10.1007/s00401-017-1731-9

Pierre-Antoine Juge et al.
Shared genetic predisposition in rheumatoid arthritis-interstitial lung disease and familial pulmonary fibrosis
European Respiratory Journal 2017, vol. 49, issue 5
doi: 10.1183/13993003.02314-2016

Kebede, AF. et al.
Histone propionylation is a mark of active chromatin.
Nat Struct Mol Biol. (2017) Dec. 24(12):1048-1056.
doi: 10.1038/nsmb.3490

Kocher A. et al.
iDNA screening: disease vectors as vertebrate samplers.
Mol Ecol. (2017) Nov. 26(22):6478-6486.
doi: 10.1111/mec.14362

Machado L. et al.
In situ fixation redefines quiescence and early activation of skeletal muscle stem cells.
Cell Rep. (2017) Nov. 21(7):1982-1993.
doi: 10.1016/j.celrep.2017.10.080

Bal E. et al.
Mutations in ACTRT1 and its enhancer RNA elements lead to aberrant activation of Hedgehog signaling in inherited and sporadic basal cell carcinomas.
Nat Med. (2017) Oct. 23(10):1226-1233.
doi: 10.1038/nm.4368

Argout X. et al.
The cacao Criollo genome v2.0: an improved version of the genome for genetic and functional genomic studies.
BMC Genomics (2017), Sep. 18(1):730.
doi: 10.1186/s12864-017-4120-9

Ghoumid J. et al.
Blepharocheilodontic syndrome is a CDH1 pathway-related disorder due to mutations in CDH1 and CTNND1.
Genet Med. (2017) Sep.19(9):1013-1021.
doi: 10.1038/gim.2017.11

Cabel L. et al.
Circulating tumor DNA changes for early monitoring of anti-PD1 immunotherapy: a proof-of-conceptstudy.
Ann Oncol. (2017) Aug. 28(8):1996-2001.
doi: 10.1093/annonc/mdx212

Cochetel N. et al.
Root transcriptomic responses of grafted grapevines to heterogeneous nitrogen availability depend on rootstock genotype.
J Exp Bot. (2017) Jul. 68(15):4339-4355.
doi: 10.1093/jxb/erx224

Ponzio G. et al.
A new long noncoding RNA (LncRNA) is induced in cutaneous squamous cell carcinoma and downregulates several anticancer and cell-differentiation genes in mouse.
J Biol Chem. (2017) Jul. 292(30):12483-12495.
doi: 10.1074/jbc.M117.776260

Kassambara A. et al.
Global miRNA expression analysis identifies novel key regulators of plasma cell differentiation and malignant plasma cell.
Nucleic Acids Res. (2017) Jun. 45(10):5639-5652.
doi: 10.1093/nar/gkx327

Barral S. et al.
Histone variant H2A.L.2 guides transition protein-dependent protamine assembly in male germ cells .
Molecular Cell (2017) Apr. 66(1):89-101.e8.
doi: 10.1016/j.molcel.2017.02.025

Schartner V. et al.
Dihydropyridine receptor (DHPR, CACNA1S) congenital myopathy.
Acta Neuropathol. (2017) Apr. 133(4):517-533.
doi: 10.1007/s00401-016-1656-8

Gies V. et al.
B cells differentiate in Human thymus and express AIRE.
J Allergy Clin Immunol. (2017) Mar. 139(3):1049-1052.e12.
doi: 10.1016/j.jaci.2016.09.044

Oger al.
Complete genome sequence of the hyperthermophilic Piezophilic Archaeon Pyrococcus kukulkanii NCB100 isolated from the Rebecca's roost hydrothermal vent in the Guaymas basin.
Genome Announc. (2017) Feb. 5(7). pii: e01667-16.
doi: 10.1128/genomeA.01667-16

Castelin M. et al.
Untangling species identity in gastropods with polymorphic shells in the genus Bolma Risso, 1826 (Mollusca, Vetigastropoda).
Eur J Taxon (2017) Feb. 288:1-21.
doi: 10.5852/ejt.2017.288

Zhukova A. et al.
Genome-wide transcriptional start site mapping and sRNA identification in the pathogen Leptospira interrogans.
Front Cell Infect Microbiol. (2017) Jan. 7:10.
doi: 10.3389/fcimb.2017.00010

Lassalle F. et al.
Ancestral genome estimation reveals the history of ecological diversification in Agrobacterium.
Genome Biol Evol. (2017) Dec. 9(12):3413-3431.
doi: 10.1093/gbe/evx255

Cerino M. et al.
Genetic characterization of a French cohort of GNE-mutation negative inclusion body myopathy patients with exome sequencing.
Muscle Nerve (2017) Nov. 56(5):993-997.
doi: 10.1002/mus.25638

Ficko-Blean E. et al.
Carrageenan catabolism is encoded by a complex regulon in marine heterotrophic bacteria.
Nat Commun. (2017) Nov. 8(1):1685.
doi: 10.1038/s41467-017-01832-6

Danchin EGJ. et al.
The transcriptomes of Xiphinema index and Longidorus elongatus suggest independent acquisition of some plant parasitism genes by horizontal gene transfer in early-branching Nematodes.
Genes (2017) Oct. 8(10). pii: E287.
doi: 10.3390/genes8100287

Arrigoni R. et al.
A new sequence data set of SSU rRNA gene for Scleractinia and its phylogenetic and ecological applications.
Mol Ecol Resour. (2017) Sep. 17(5):1054-1071.
doi: 10.1111/1755-0998.12640

Garcia-Seco D. et al.
Transcriptome and proteome analysis reveal new insight into proximal and distal responses of wheat to foliar infection by Xanthomonas translucens.
Sci Rep. (2017) Aug.7(1):10157.
doi: 10.1038/s41598-017-10568-8

Morchikh M. et al.
HEXIM1 and NEAT1 long non-coding RNA form a multi-subunit complex that regulates DNA-mediated innate immune response.
Mol Cell. (2017) Aug. 67(3):387-399.e5.
doi: 10.1016/j.molcel.2017.06.020