Publications 2017

Jérôme Audoux et al.
DE-kupl: exhaustive capture of biological variation in RNA-seq data through k-mer decomposition
Genome Biology 2017, vol. 18, issue 1
doi: 10.1186/s13059-017-1372-2

Gustave Djedatin et al.
DuplicationDetector , a light weight tool for duplication detection using NGS data
Current Plant Biology 2017, vol. 9-10
doi: 10.1016/j.cpb.2017.07.001

Florence Rufflé et al.
New chimeric RNAs in acute myeloid leukemia
F1000Research 2017, vol. 6
doi: 10.12688/f1000research.11352.1

Valentina Boeva et al.
Heterogeneity of neuroblastoma cell identity defined by transcriptional circuitries
Nature Genetics 2017, vol. 49, issue 9
doi: 10.1038/ng.3921

Stéphanie Guey et al.
Rare RNF213 variants in the C-terminal region encompassing the RING-finger domain are associated with moyamoya angiopathy in Caucasians
European Journal of Human Genetics 2017, vol. 25, issue 8
doi: 10.1038/ejhg.2017.92

Alain Meyer et al.
IFN-β-induced reactive oxygen species and mitochondrial damage contribute to muscle impairment and inflammation maintenance in dermatomyositis
Acta Neuropathologica 2017, vol. 134, issue 4
doi: 10.1007/s00401-017-1731-9

Pierre-Antoine Juge et al.
Shared genetic predisposition in rheumatoid arthritis-interstitial lung disease and familial pulmonary fibrosis
European Respiratory Journal 2017, vol. 49, issue 5
doi: 10.1183/13993003.02314-2016

Renault V. et al.
aCNViewer: Comprehensive genome-wide visualization of absolute copy number and copy neutral variations.
PLoS One (2017) Dec. 12(12):e0189334.
doi: 10.1371/journal.pone.0189334

Weill FX. et al.
Genomic history of the seventh pandemic of cholera in Africa.
Science (2017) Nov. 358(6364):785-789.
doi: 10.1126/science.aad5901

Auffret P. et al.
Draft genome sequence of enterohemorrhagic Escherichia coli O157:H7 strain MC2 isolated from cattlde in France.
Genome Announc. (2017) Oct. 5(40). pii: e01097-17.
doi: 10.1128/genomeA.01097-17

Plouhinec JL. et al.
A molecular atlas of the developing ectoderm defines neural, neural crest, placode, and nonneural progenitor identity in vertebrates.
PLoS Biol. (2017) Oct. 15(10):e2004045.
doi: 10.1371/journal.pbio.2004045

Payelleville A. et al.
DNA adenine methyltransferase (Dam) overexpression impairs Photorhabdus luminescens Motility and Virulence.
Front Microbiol. (2017) Sep. 8: 1671
doi: 10.3389/fmicb.2017.01671

Sun S. et al.
Fungal genome and mating system transitions facilitated by chromosomal translocations involving intercentromeric recombination.
PLoS Biol. (2017) Aug. 15(8):e2002527.
doi: 10.1371/journal.pbio.2002527

Farasin J. et al
Comparison of biofilm formation and motility processes in arsenic-resistant Thiomonas spp. strains revealed divergent response to arsenite.
Microb Biotechnol. (2017) Jul. 10(4):789-803.
doi: 10.1111/1751-7915.12556

Martinot E. et al.
The bile acid nuclear receptor FXRalpha is a critical regulator of Mouse germ cell fate.
Stem Cell Reports (2017) Jul. 9(1):315-328.
doi: 10.1016/j.stemcr.2017.05.036

Scelo G. et al.
Genome-wide association study identifies multiple risk loci for renal cell carcinoma.
Nat Commun. (2017) Jun. 8:15724.
doi: 10.1038/ncomms15724

Richer W. et al.
Embryonic signature distinguishes pediatric and adult rhabdoid tumors from other SMARCB1-deficient cancers.
Oncotarget (2017) May. 8(21):34245-34257.
doi: 10.18632/oncotarget.15939

Arguel M.J. et al.
A cost effective 5?selective single cell transcriptome profiling approach with improved UMI design.
Nucleic Acids Res. (2017) Apr. 45(7):e48.
doi: 10.1093/nar/gkw1242

Saintamand A. et al.
E(?) and 3'RR IgH enhancers show hierarchic unilateral dependence in mature B-cells.
Sci Rep. (2017) Mar. 7(1):442.
doi: 10.1038/s41598-017-00575-0

Arseneault M. et al.
Loss of chromosome Y leads to down regulation of KDM5D and KDM6C epigenetic modifiers in clear cell renal cell carcinoma.
Sci Rep. (2017) Mar. 7:44876.
doi: 10.1038/srep44876

Pivot X. et al.
Constitutional variants are not associated with HER2-positive breast cancer: results from the SIGNAL/PHARE clinical cohort.
NPJ Breast Cancer (2017) Feb. 3:4.
doi: 10.1038/s41523-017-0005-y

Mercier S. et al.
Expanding the spectrum of congenital myopathy linked to recessive mutations in SCN4A.
Neurology (2017) Jan. 88(4):414-416.
doi: 10.1212/WNL.0000000000003535

Muret K. et al.
Long noncoding RNA repertoire in chicken liver and adipose tissue.
Genet Sel Evol. (2017) Jan. 49(1):6.
doi: 10.1186/s12711-016-0275-0

Eggerbauer E. et al.
The recently discovered bokeloh bat lyssavirus: Insights into its genetic heterogeneity and spatial distribution in Europe and the population genetics of its primary host.
Advances in virus research (Elsevier), (2017) 99: 199-232.
doi: 10.1016/bs.aivir.2017.07.004

Warnke M. et al.
A patchwork pathway for oxygenase-independent degradation of side chain containing steroids.
Environ Microbiol. (2017) Nov. 19(11):4684-4699.
doi: 10.1111/1462-2920.13933

Kocher A. et al.
Evaluation of shortmitochondrial metabarcodes for the identification of Amazonian mammals.
Methods in Ecology and Evolution (2017) Oct. 8: 1276–1283.
doi: 10.1111/2041-210X.12729

Ceolin L. et al.
Cell Type-Specific mRNA Dysregulation in Hippocampal CA1 Pyramidal Neurons of the Fragile X Syndrome Mouse Model.
Front Mol Neurosci. (2017) Oct. 10:340.
doi: 10.3389/fnmol.2017.00340

Medigue C. et al.
MicroScope-an integrated resource for community expertise of gene functions and comparative analysis of microbial genomic and metabolic data. In
Brief Bioinformatics (2017) Sep.
doi: 10.1093/bib/bbx11

ten Hoopen P. et al.
The metagenomic data life-cycle: standards and best practices.
GigaScience (2017) Aug. 6(8):1-11.
doi: 10.1093/gigascience/gix047

Lupu-Plesu M. et al.
Effects of proton versus photon irradiation on (lymph)angiogenic, inflammatory, proliferative and anti-tumor immune responses in head and neck squamous cell carcinoma.
Oncogenesis (2017) Jul. 6(7):e354.
doi: 10.1038/oncsis.2017.56