Publications 2017

Jérôme Audoux et al.
DE-kupl: exhaustive capture of biological variation in RNA-seq data through k-mer decomposition
Genome Biology 2017, vol. 18, issue 1
doi: 10.1186/s13059-017-1372-2

Gustave Djedatin et al.
DuplicationDetector , a light weight tool for duplication detection using NGS data
Current Plant Biology 2017, vol. 9-10
doi: 10.1016/j.cpb.2017.07.001

Florence Rufflé et al.
New chimeric RNAs in acute myeloid leukemia
F1000Research 2017, vol. 6
doi: 10.12688/f1000research.11352.1

Valentina Boeva et al.
Heterogeneity of neuroblastoma cell identity defined by transcriptional circuitries
Nature Genetics 2017, vol. 49, issue 9
doi: 10.1038/ng.3921

Stéphanie Guey et al.
Rare RNF213 variants in the C-terminal region encompassing the RING-finger domain are associated with moyamoya angiopathy in Caucasians
European Journal of Human Genetics 2017, vol. 25, issue 8
doi: 10.1038/ejhg.2017.92

Alain Meyer et al.
IFN-β-induced reactive oxygen species and mitochondrial damage contribute to muscle impairment and inflammation maintenance in dermatomyositis
Acta Neuropathologica 2017, vol. 134, issue 4
doi: 10.1007/s00401-017-1731-9

Pierre-Antoine Juge et al.
Shared genetic predisposition in rheumatoid arthritis-interstitial lung disease and familial pulmonary fibrosis
European Respiratory Journal 2017, vol. 49, issue 5
doi: 10.1183/13993003.02314-2016

Van de Paer C. et al.
Prospects on the evolutionary mitogenomics of plants: a case study on the olive family (Oleaceae).
Mol Ecol Resour. (2017) Nov 24.
doi: 10.1111/1755-0998.12742

Rousseau E. et al.
Estimating virus effective population size and selection without neutral markers.
PLoS Pathog. (2017) Nov.13(11):e1006702.
doi: 10.1371/journal.ppat.1006702

Troudet R. et al.
RNA signature and prediction to treatment response in first episode schizophrenia.
European Neuropsychopharm. (2017) Oct. 27: S597-S597.
doi: 10.1016/S0924-977X(17)31139-2

Frachon L. et al.
Intermediate degrees of synergistic pleiotropy drive adaptive evolution in ecological time.
Nature Ecology Evolution (2017) Oct. 1:1551–1561
doi: 10.1038/s41559-017-0297-1

Sims R. et al.
Rare coding variants in PLCG2, ABI3, and TREM2 implicate microglial-mediated innate immunity in Alzheimer's disease.
Nat. Genetics (2017) Sept. 49(9):1373-1384.
doi: 10.1038/ng.3916

Genin E. et al.
The French Exome (FREX) Project: A Population-based panel of exomes to help filter out common local variants.
Genetic Epidemiology (2017) Aug. 41 (7): p. 691-691. The 2017 Annual Meeting of the International Genetic Epidemiology Society
doi: 10.1002/gepi.22062

Nattier R. et al.
Phylogeny and diversification of the cloud forest Morpho sulkowskyi group (Lepidoptera, Nymphalidae) in the evolving Andes.
Zool Scr. (2017) Jul. 46(4):459-472.
doi: 10.1111/zsc.12226

. Paulet D. et al.
Ribo-seq enlightens codon usage bias.
DNA Res. (2017) Jun. 24(3): 303–210.
doi: 10.1093/dnares/dsw062

Cossu M. et al.
Flipping chromosomes in deep-sea archaea.
PLoS Genet. (2017) Jun . 13(6):e1006847.
doi: 10.1371/journal.pgen.1006847

Cottard F. et al.
Dual effects of constitutively active androgen receptor and full-length androgen receptor for N-cadherin regulation in prostate cancer.
Oncotarget (2017) May. 8(42):72008-72020.
doi: 10.18632/oncotarget.18270

Fradin D. et al.
Genome-wide methylation analysis identifies specific epigenetic marks in severely obese children.
Sci Rep. (2017) Apr. 7:46311.
doi: 10.1038/srep46311

Philippon al.
IsoSel: Protein Isoform Selector for phylogenetic reconstructions.
PLoS One (2017) Mar.12(3):e0174250.
doi: 10.1371/journal.pone.0174250

Galinier R. et al.
A multistrain approach to studying the mechanisms underlying compatibility in the interaction between Biomphalaria glabrata and Schistosoma mansoni.
PLoS Negl Trop Dis. (2017) Mar. 11(3):e0005398.
doi: 10.1371/journal.pntd.0005398

Mazuet C. et al.
Characterization of Clostridium Baratii Type F strains responsible for an outbreak of botulism linked to beef meat consumption in France.
PLOS Currents Outbreaks (2017) Feb. Edition 1.
doi: 10.1371/currents.outbreaks.6ed2fe754b58a5c42d0c33d586ffc606

Garcia-Oliver E. et al.
Bdf1 bromodomains are essential for meiosis and the expression of meiotic-specific genes.
PLoS Genet. (2017) Jan. 13(1):e1006541.
doi: 10.1371/journal.pgen.1006541

Kocher A. et al.
High-throughput sequencing of kDNA amplicons for the analysis of Leishmania minicircles and identification of Neotropical species.
Parasitology (2017) Nov: 1-8.
doi: 10.1017/S0031182017002013

Abath Neto O. et al.
Common and variable clinical, histological, and imaging findings of recessive RYR1-related centronuclear myopathy patients.
Neuromuscul Disord. (2017) Nov. 27(11):975-985.
doi: 10.1016/j.nmd.2017.05.016

Martins RM. et al.
An ApiAP2 member regulates expression of clonally variant genes of the human malaria parasite Plasmodium falciparum.
Sci Rep. (2017) Oct.7(1):14042.
doi: 10.1038/s41598-017-12578-y

Cohen-Boulakia S. et al.
Scientific workflows for computational reproducibility in the life sciences: Status, challenges and opportunities.
Future Generation Computer Systems (2017) Oct. 75:284-298.
doi: 10.1016/j.future.2017.01.012

Goudot C. et al.
Aryl Hydrocarbon receptor controls monocyte differentiation into dendritic cells versus macrophages.
Immunity (2017) Sep. 47(3):582-596.e6.
doi: 10.1016/j.immuni.2017.08.016

Pierron D. et al.
Genomic landscape of human diversity across Madagascar.
Proc Natl Acad Sci U S A (2017) Aug. 114(32):E6498-E6506.
doi: 10.1073/pnas

Fariello MI. et al.
Accounting for linkage disequilibrium in genome scans for selection without individual genotypes: The local score approach.
Mol Ecol. (2017) Jul. 26(14):3700-3714.
doi: 10.1111/mec.14141

Blanc-Mathieu R. et al.
Hybridization and polyploidy enable genomic plasticity without sex in the most devastating plant-parasitic nematodes.
Plos Genetics (2017) Jun . 13 (6), e1006777,
doi: 10.1371/journal.pgen.1006777