Publications 2017

Ficko-Blean E. et al.
Carrageenan catabolism is encoded by a complex regulon in marine heterotrophic bacteria.
Nat Commun. (2017) Nov. 8(1):1685.
doi: 10.1038/s41467-017-01832-6

Danchin EGJ. et al.
The transcriptomes of Xiphinema index and Longidorus elongatus suggest independent acquisition of some plant parasitism genes by horizontal gene transfer in early-branching Nematodes.
Genes (2017) Oct. 8(10). pii: E287.
doi: 10.3390/genes8100287

Arrigoni R. et al.
A new sequence data set of SSU rRNA gene for Scleractinia and its phylogenetic and ecological applications.
Mol Ecol Resour. (2017) Sep. 17(5):1054-1071.
doi: 10.1111/1755-0998.12640

Garcia-Seco D. et al.
Transcriptome and proteome analysis reveal new insight into proximal and distal responses of wheat to foliar infection by Xanthomonas translucens.
Sci Rep. (2017) Aug.7(1):10157.
doi: 10.1038/s41598-017-10568-8

Morchikh M. et al.
HEXIM1 and NEAT1 long non-coding RNA form a multi-subunit complex that regulates DNA-mediated innate immune response.
Mol Cell. (2017) Aug. 67(3):387-399.e5.
doi: 10.1016/j.molcel.2017.06.020

Czimmerer Z. et al.
Extensive and functional overlap of the STAT6 and RXR cistromes in the active enhancer repertoire of human CD14+ monocyte derived differentiating macrophages.
Mol Cell Endocrinol. (2017) Jul. pii: S0303-7207(17)30414-8.
doi: 10.1016/j.mce.2017.07.034

Badouin H. et al.
The sunflower genome provides insights into oil metabolism, flowering and Asterid evolution.
Nature (2017) Jun. 546:148–152.
doi: 10.1038/nature22380

Jegu T. et al.
The Arabidopsis SWI/SNF protein BAF60 mediates seedling growth control by modulating DNA accessibility.
Genome Biol. (2017) Jun. 18(1):114.
doi: 10.1186/s13059-017-1246-7

Eckenfelder A. et al.
Argonaute proteins regulate HIV-1 multiply spliced RNA and viral production in a Dicer independent manner.
Nucleic Acids Res. (2017) Apr. 45(7):4158-4173.
doi: 10.1093/nar/gkw1289

Suchon P. et al.
Protein S Heerlen mutation heterozygosity is associated with venous thrombosis risk.
Sci Rep. (2017) Apr. 7:45507.
doi: 10.1038/srep45507

Bouschet T. et al.
In Vitro corticogenesis from embryonic stem cells recapitulates the in vivo epigenetic control of imprinted gene expression.
Cereb Cortex. (2017) Mar. 27:2418-2433
doi: 10.1093/cercor/bhw102

Villain A.et al.
Complete mitochondrial genome sequence of the freshwater diatom Asterionella Formosa.
Mitochondrial DNA Part B (2017) Feb . 2:1, 97-98.
doi: 10.1080/23802359.2017.1285210

Istace B. et al.
De novo assembly and population genomic survey of natural yeast isolates with the Oxford Nanopore MinION sequencer.
Gigascience (2017) Feb. 6(2):1-13.
doi: 10.10 93/gigascience/giw018

Pancrace C. et al.
Insights into the Planktothrix genus: Genomic and metabolic comparison of benthic and planktic strains.
Sci Rep. (2017) Jan. 7:41181.
doi: 10.1038/srep41181

Adam IKU. et al.
Microbial communities in pyrene amended soil-compost mixture and fertilized soil.
AMB Express (2017) Dec.7(1):7.
doi: 10.1186/s13568-016-0306-9

Fleischer T. et al.
DNA methylation at enhancers identifies distinct breast cancer lineages.
Nat Commun. (2017) Nov. 8(1):1379.
doi: 10.1038/s41467-017-00510-x

Zarif H. et al.
CD8(+) T cells are essential for the effects of enriched environment on hippocampus-dependent behavior, hippocampal neurogenesis and synaptic plasticity.
Brain Behav Immun. (2017) Nov. pii: S0889-1591(17)30517-2.
doi: 10.1016/j.bbi.2017.11.016

Fournier T. et al.
High-Quality de novo genome assembly of the Dekkera bruxellensis yeast using nanopore MinION sequencing.
G3 (2017) Oct. 7(10):3243-3250.
doi: 10.1534/g3.117.300128

Madoui MA. et al.
New insights into global biogeography, population structure and natural selection from the genome of the epipelagic copepod Oithona.
Mol Ecol. (2017) Sep. 26(17):4467-4482.
doi: 10.1111/mec.14214

Alberti A. et al.
Viral to metazoan marine plankton nucleotide sequences from the Tara Oceans expedition.
Scientific Data (2017) Aug. 4, e170093,
doi: 10.1038/sdata.2017.93

Baratin M. et al.
T Cell zone resident macrophages silently dispose of apoptotic cells in the lymph node.
Immunity (2017) Aug. 47(2):349-362.e5.
doi: 10.1016/j.immuni.2017.07.019

Echaniz-Laguna A. et al.
HSPB8 haploinsufficiency causes dominant adult-onset axial and distal myopathy.
Acta Neuropathol. (2017) Jul.134(1):163-165.
doi: 10.1007/s00401-017-1724-8

Bruel AL. et al.
Fifteen years of research on oral-facial-digital syndromes: from 1 to 16 causal genes.
J Med Genet. (2017) Jun. 54(6):371-380.
doi: 10.1136/jmedgenet-2016-104436

Papin C. et al.
Combinatorial DNA methylation codes at repetitive elements.
Genome Res. (2017) Jun. 27(6):934-946.
doi: 10.1101/gr.213983.116

Faucon F. et al.
In the hunt for genomic markers of metabolic resistance to pyrethroids in the mosquito Aedes aegypti: An integrated next-generation sequencing approach.
PLoS Negl. Trop. Dis. (2017) Apr. 11(4):e0005526.
doi: 10.1371/journal.pntd.0005526

Tost J. et al.
Epigenetics of the immune system and alterations in inflammation and autoimmunity Foreword.
Epigenomics (2017) Apr. 9(4):371-373.
doi: 10.2217/epi-2017-0026

Bussard A. et al.
Physiological adjustments and transcriptome reprogramming are involved in the acclimation to salinity gradients in diatoms:
Environmental Microbiol. (2017) Mar. 19(3):909-925.
doi: 10.1111/1462-2920.13398

Bourgeois YXC. et al.
A novel locus on chromosome 1 underlies the evolution of a melanic plumage polymorphism in a wild songbird.
R Soc Open Sci. (2017) Feb. 4(2):160805.
doi: 10.1098/rsos.160805

Sierra B. et al.
OSBPL10, RXRA and lipid metabolism confer African-ancestry protection against dengue haemorrhagic fever in admixed Cubans.
PLoS Pathog. (2017) Feb. 13(2):e1006220.
doi: 10.1371/journal.ppat.1006220

Ebenau-Jehle C. et al.
An unusual strategy for the anoxic biodegradation of phthalate.
ISME J. (2017) Jan.11(1):224-236.
doi: 10.1038/ismej.2016.91