Publications 2017

Warnke M. et al.
A patchwork pathway for oxygenase-independent degradation of side chain containing steroids.
Environ Microbiol. (2017) Nov. 19(11):4684-4699.
doi: 10.1111/1462-2920.13933

Kocher A. et al.
Evaluation of shortmitochondrial metabarcodes for the identification of Amazonian mammals.
Methods in Ecology and Evolution (2017) Oct. 8: 1276–1283.
doi: 10.1111/2041-210X.12729

Ceolin L. et al.
Cell Type-Specific mRNA Dysregulation in Hippocampal CA1 Pyramidal Neurons of the Fragile X Syndrome Mouse Model.
Front Mol Neurosci. (2017) Oct. 10:340.
doi: 10.3389/fnmol.2017.00340

Medigue C. et al.
MicroScope-an integrated resource for community expertise of gene functions and comparative analysis of microbial genomic and metabolic data. In
Brief Bioinformatics (2017) Sep.
doi: 10.1093/bib/bbx11

ten Hoopen P. et al.
The metagenomic data life-cycle: standards and best practices.
GigaScience (2017) Aug. 6(8):1-11.
doi: 10.1093/gigascience/gix047

Lupu-Plesu M. et al.
Effects of proton versus photon irradiation on (lymph)angiogenic, inflammatory, proliferative and anti-tumor immune responses in head and neck squamous cell carcinoma.
Oncogenesis (2017) Jul. 6(7):e354.
doi: 10.1038/oncsis.2017.56

Latrasse D. et al.
MAPK-triggered chromatin reprogramming by histone deacetylase in plant innate immunity.
Genome Biol. (2017) Jul. 18(1):131.
doi: 10.1186/s13059-017-1261-8

Simioni M. et al.
Genomic investigation of balanced chromosomal rearrangements in patients with abnormal phenotypes.
Mol Syndromol. (2017) Jun. 8(4):187-194.
doi: 10.1159/000477084

Euceda LR. et al.
Metabolic response to Everolimus in patient-derived triple-negative breast cancer xenografts.
J Proteome Res. (2017) May. 16(5):1868-1879.
doi: 10.1021/acs.jproteome.6b00918

Quartier A. et al.
Intragenic FMR1 disease-causing variants: a significant mutational mechanism leading to Fragile-X syndrome.
Eur J Hum Genet. (2017)
doi: 10.1038/ejhg.2016.204

Delpech P.et al.
New insights into the anti-pathogenic potential of Lactococcus garvieae against Staphylococcus aureus based on RNA sequencing profiling.
Front Microbiol. (2017) Mar. 8:359.
doi: 10.3389/fmicb.2017.00359

Lornage X. et al.
Recessive MYPN mutations cause cap myopathy with occasional nemaline rods.
Ann Neurol. 2017 Mar. 81(3):467-473.
doi: 10.1002/ana.24900

Sefrioui D. et al.
Comparison of the quantification of KRAS mutations by digital PCR and E-ice-COLD-PCR in circulating-cell-free DNA from metastatic colorectal cancer patients.
Clin Chim Acta (2017) Feb. 465:1-4.
doi: 10.1016/j.cca.2016

Fleischer T. et al.
DNA methylation signature (SAM40) identifies subgroups of the Luminal A breast cancer samples with distinct survival.
Oncotarget (2017) Jan. 8(1):1074-1082.
doi: 10.18632/oncotarget.13718

Goñi Urriza M. et al.
Draft Genome Sequence of DesulfovibrioBerOc1, a Mercury-Methylating Strain.
Genome Announc. (2017) Jan. 5(3): e01483-16.
doi: 10.1128/genomeA.01483-16

Bonneaud N. et al.
Control of nerve cord formation by Engrailed and Gooseberry-Neuro: A multi-step, coordinated process.
Dev Biol. (2017) Dec. 432(2):273-285.
doi: 10.1016/j.ydbio.2017.10.018

Domman D. et al.
Integrated view of Vibrio cholerae in the Americas.
Science (2017) Nov. 358(6364):789-793.
doi: 10.1126/science.aao2136

Charmet R. et al.
Association of impaired renal function with venous thrombosis: A genetic risk score approach.
Thromb Res. (2017) Oct. 158:102-107.
doi: 10.1016/j.thromres.2017.08.015

Varrault A. et al.
Identification of Plagl1/Zac1 binding sites and target genes establishes its role in the regulation of extracellular matrix genes and the imprinted gene network.
Nucleic Acids Res. (2017) Oct 13.45(18):10466-10480.
doi: 10.1093/nar/gkx672

Belda E. et al.
Accurate microbial genome annotation using an integrated and user-friendly environment for community expertise of gene functions: The MicroScope Platform. In
Hydrocarbon and Lipid Microbiology Protocols: Genetic, Genomic and System Analyses of Pure Cultures (2017) pp 141-169. Berlin, Heidelberg
doi:

Blanchard L. et al.
Conservation and diversity of the IrrE/DdrO-controlled radiation response in radiation-resistant Deinococcus bacteria.
MicrobiologyOpen (2017) Aug. 6(4).
doi: 10.1002/mbo3.477

Tsagmo Ngoune JM. et al.
Transcriptional profiling of Midguts prepared from Trypanosoma/T. congolense-positive Glossina palpalis palpalis collected from two distinct Cameroonian Foci: coordinated signatures of the Midguts' remodeling as T. congolense-supportive niches.
Frontiers in Immunology (2017) Jul. 8:876.
doi: 10.3389/fimmu.2017.00876

Duc C. et al.
Arabidopsis ATRX modulates H3.3 occupancy and fine-tunes gene expression.
Plant Cell. (2017) Jul. 29(7):1773-1793.
doi: 10.1105/tpc.16.00877

Le Tourneau C. et al.
The SHIVA01 trial: what have we learned?
Pharmacogenomics (2017) Jun. 18(9):831-834.
doi: 10.2217/pgs-2017-0062

Sobhani I. et al.
Microbiota as a new indicator of colorectal cancer (CRC) heterogeneity.
J Clin Oncology (2017) May. 35(15) suppl 3615-3615.
doi: doi :10.1200/JCO.2017.35.15_suppl.3615

Dupont H. et al.
Structural alteration of OmpR as a source of ertapenem resistance in a CTX-M-15-producing Escherichia coli O25b:H4 sequence type 131 clinical isolate.
Antimicrob Agents Chemother. (2017) Apr. 61(5). pii: e00014-17.
doi: 10.1128/AAC.00014-17

Mobuchon L. et al.
A GWAS in uveal melanoma identifies risk polymorphisms in the CLPTM1L locus.
NPJ Genom Med. (2017) Mar. 2. pii: 5.
doi: 10.1038/s41525-017-0008-5

Robbe-Saule M. et al.
An optimized method for extracting bacterial RNA from Mouse skin tissue colonized by Mycobacterium ulcerans.
Front Microbiol. (2017) Mar. 8:512.
doi: 10.3389/fmicb.2017.00512

Stoekle HC. et al.
Toward dynamic informed consent.
Med Sci. (Paris) (2017) Feb. 33(2):188-192.
doi: 10.1051/medsci/20173302015

Fogel O. et al.
Epigenetic changes in chronic inflammatory diseases.
Adv Protein Chem Struct Biol. (2017) 106:139-189.
doi: 10.1016/bs.apcsb.2016.09.003