Publications 2017

Costea PI. et al.
Towards standards for human fecal sample processing in metagenomic studies.
Nat Biotechnol. (2017) Nov. 35(11):1069-1076.
doi: 10.1038/nbt.3960

Nelson I. et al.
Novel recessive splice site mutation in POPDC1 (BVES) is associated with first-degree atrioventricular block and muscular dystrophy.
Neuromus. Dis. (2017) Oct. 27: S139-S140.
doi: 10.1016/j.nmd.2017.06.172

Saudemont B. et al.
The fitness cost of mis-splicing is the main determinant of alternative splicing patterns.
Genome Biology (2017) Oct. 18(1):208.
doi: 10.1186/s13059-017-1344-6

Eoche-Bosy D. et al.
Genome scans on experimentally evolved populations reveal candidate regions for adaptation to plant resistance in the potato cyst nematode Globodera pallida.
Mol Ecol. (2017) Sep. 26(18):4700-4711.
doi: 10.1111/mec.14240

Curtit E. et al.
Assessment of the prognostic role of a 94-single nucleotide polymorphisms risk score in early breast cancer in the SIGNAL/PHARE prospective cohort: no correlation with clinico-pathological characteristics and outcomes.
Breast Cancer Res. (2017) Aug. 19(1):98.
doi: 10.1186/s13058-017-0888-4

Pancrace C. et al.
Rearranged biosynthetic gene cluster and synthesis of hassallidin E in Planktothrix serta PCC 8927.
ACS Chem Biol. (2017) Jul. 12(7):1796-1804.
doi: 10.1021/acschembio

Demars J. et al.
Genome-wide identification of the mutation underlying fleece variation and discriminating ancestral hairy species from modern woolly Sheep.
Mol Biol Evol. (2017) Jul. 34(7):1722-1729.
doi: 10.1093/molbev/msx114

Biard T. et al.
Biogeography and diversity of Collodaria (Radiolaria) in the global ocean.
ISME J (2017) Jun.11(6):1331-1344.
doi: 10.1038/ismej.2017.12

Abdou E. et al.
RegA plays a key role in oxygen-dependent establishment of persistence and in isocitrate lyase activity, a critical determinant of in vivo Brucella suis pathogenicity.
Front Cell Infect Microbiol. (2017) May. 7:186.
doi: 10.3389/fcimb.2017.00186

Dos Santos RS. et al.
dUTPase (DUT) is mutated in a novel monogenic syndrome with diabetes and bone marrow failure.
Diabetes (2017) Apr. 66(4):1086-1096.
doi: 10.2337/db16-0839

Chouari R. et al.
Eukaryotic molecular diversity at different steps of the wastewater treatment plant process reveals more phylogenetic novel lineages.
World J Microbiol Biotechnol. (2017) Mar. 33(3):44.
doi: 10.1007/s11274-017-2217-6

Popovic A. et al.
Activity screening of environmental metagenomic libraries reveals novel carboxylesterase families.
Sci Rep. (2017) Mar. 7:44103.
doi: 10.1038/srep44103

Sahr T. et al.
The Legionella pneumophila genome evolved to accommodate multiple regulatory mechanisms controlled by the CsrA-system.
PLoS Genet. (2017) Feb. 13(2):e1006629.
doi: 10.1371/journal.pgen.1006629

Khalaf-Nazzal R. et al.
Early born neurons are abnormally positioned in the doublecortin knockout hippocampus.
Hum Mol Genet. (2017) Jan. 26(1):90-108.
doi: 10.1093/hmg/ddw370

Van de Paer C. et al.
Prospects on the evolutionary mitogenomics of plants: a case study on the olive family (Oleaceae).
Mol Ecol Resour. (2017) Nov 24.
doi: 10.1111/1755-0998.12742

Rousseau E. et al.
Estimating virus effective population size and selection without neutral markers.
PLoS Pathog. (2017) Nov.13(11):e1006702.
doi: 10.1371/journal.ppat.1006702

Troudet R. et al.
RNA signature and prediction to treatment response in first episode schizophrenia.
European Neuropsychopharm. (2017) Oct. 27: S597-S597.
doi: 10.1016/S0924-977X(17)31139-2

Frachon L. et al.
Intermediate degrees of synergistic pleiotropy drive adaptive evolution in ecological time.
Nature Ecology Evolution (2017) Oct. 1:1551–1561
doi: 10.1038/s41559-017-0297-1

Sims R. et al.
Rare coding variants in PLCG2, ABI3, and TREM2 implicate microglial-mediated innate immunity in Alzheimer's disease.
Nat. Genetics (2017) Sept. 49(9):1373-1384.
doi: 10.1038/ng.3916

Genin E. et al.
The French Exome (FREX) Project: A Population-based panel of exomes to help filter out common local variants.
Genetic Epidemiology (2017) Aug. 41 (7): p. 691-691. The 2017 Annual Meeting of the International Genetic Epidemiology Society
doi: 10.1002/gepi.22062

Nattier R. et al.
Phylogeny and diversification of the cloud forest Morpho sulkowskyi group (Lepidoptera, Nymphalidae) in the evolving Andes.
Zool Scr. (2017) Jul. 46(4):459-472.
doi: 10.1111/zsc.12226

. Paulet D. et al.
Ribo-seq enlightens codon usage bias.
DNA Res. (2017) Jun. 24(3): 303–210.
doi: 10.1093/dnares/dsw062

Cossu M. et al.
Flipping chromosomes in deep-sea archaea.
PLoS Genet. (2017) Jun . 13(6):e1006847.
doi: 10.1371/journal.pgen.1006847

Cottard F. et al.
Dual effects of constitutively active androgen receptor and full-length androgen receptor for N-cadherin regulation in prostate cancer.
Oncotarget (2017) May. 8(42):72008-72020.
doi: 10.18632/oncotarget.18270

Fradin D. et al.
Genome-wide methylation analysis identifies specific epigenetic marks in severely obese children.
Sci Rep. (2017) Apr. 7:46311.
doi: 10.1038/srep46311

Philippon H.et al.
IsoSel: Protein Isoform Selector for phylogenetic reconstructions.
PLoS One (2017) Mar.12(3):e0174250.
doi: 10.1371/journal.pone.0174250

Galinier R. et al.
A multistrain approach to studying the mechanisms underlying compatibility in the interaction between Biomphalaria glabrata and Schistosoma mansoni.
PLoS Negl Trop Dis. (2017) Mar. 11(3):e0005398.
doi: 10.1371/journal.pntd.0005398

Mazuet C. et al.
Characterization of Clostridium Baratii Type F strains responsible for an outbreak of botulism linked to beef meat consumption in France.
PLOS Currents Outbreaks (2017) Feb. Edition 1.
doi: 10.1371/currents.outbreaks.6ed2fe754b58a5c42d0c33d586ffc606

Garcia-Oliver E. et al.
Bdf1 bromodomains are essential for meiosis and the expression of meiotic-specific genes.
PLoS Genet. (2017) Jan. 13(1):e1006541.
doi: 10.1371/journal.pgen.1006541

Kocher A. et al.
High-throughput sequencing of kDNA amplicons for the analysis of Leishmania minicircles and identification of Neotropical species.
Parasitology (2017) Nov: 1-8.
doi: 10.1017/S0031182017002013