Publications 2017

Duarte M. et al.
Functional soil metagenomics: elucidation of polycyclic aromatic hydrocarbon degradation potential following 12 years of in situ bioremediation.
Environ Microbiol. (2017) Aug.19(8):2992-3011.
doi: 10.1111/1462-2920.13756

Thierion E. et al.
Krox20 hindbrain regulation incorporates multiple modes of cooperation between cis-acting elements.
PLoS Genet. (2017) Jul. 13(7):e1006903.
doi: 10.1371/journal.pgen.1006903

Dao LTM. et al.
Genome-wide characterization of mammalian promoters with distal enhancer functions.
Nature Genetics. (2017) Jul. 49(7):1073-1081.
doi: 10.1038/ng.3884

Saultier P. et al.
Macrothrombocytopenia and dense granule deficiency associated with FLI1 variants: ultrastructural and pathogenic features.
Haematologica (2017) Jun. 102(6):1006-1016.
doi: 10.3324/haematol.2016.153577

Cerisy T. et al.
Evolution of a biomass-fermenting Bacterium to resist lignin phenolics.
Appl Environ Microbiol. (2017) May. 83(11). pii: e00289-17.
doi: 10.1128/AEM.00289-17

Tarabay Y. et al.
Tex19 paralogs are new members of the piRNA pathway controlling retrotransposon suppression.
J Cell Sci. (2017) Apr. 130(8):1463-1474.
doi: 10.1242/jcs.188763

Hamidou Soumana I. et al.
Comparative genomics of Glossina palpalis gambiensis and G. morsitans morsitans to reveal gene orthologs involved in infection by Trypanosoma brucei gambiense.
Front Microbiol. (2017) Apr. 8:540.
doi: 10.3389/fmicb.2017.00540

Bohm J. et al.
ORAI1 mutations with distinct channel gating defects in tubular aggregate myopathy.
Human Mutation (2017).Mar. 38 (4): 426-438
doi: 10.1002/humu.23172

Bruel AL. et al.
Autosomal recessive truncating MAB21L1 mutation associated with a syndromic scrotal agenesis.
Clin Genet. (2017) Feb. 91(2):333-338.
doi: 10.1111/cge.12794

Costantino F. et al.
A family-based genome-wide association study reveals an association of spondyloarthritis with MAPK14.
Ann Rheum Dis. (2017) Jan. 76(1):310-314.
doi: 10.1136/annrheumdis-2016-209449

Rougemont Q. et al.
Inferring the demographic history underlying parallel genomic divergence among pairs of parasitic and non-parasitic lamprey ecotypes.
Mol Ecol. (2017) Jan. 26(1):142-162.
doi: 10.1111/mec.13664

Renault V. et al.
aCNViewer: Comprehensive genome-wide visualization of absolute copy number and copy neutral variations.
PLoS One (2017) Dec. 12(12):e0189334.
doi: 10.1371/journal.pone.0189334

Weill FX. et al.
Genomic history of the seventh pandemic of cholera in Africa.
Science (2017) Nov. 358(6364):785-789.
doi: 10.1126/science.aad5901

Auffret P. et al.
Draft genome sequence of enterohemorrhagic Escherichia coli O157:H7 strain MC2 isolated from cattlde in France.
Genome Announc. (2017) Oct. 5(40). pii: e01097-17.
doi: 10.1128/genomeA.01097-17

Plouhinec JL. et al.
A molecular atlas of the developing ectoderm defines neural, neural crest, placode, and nonneural progenitor identity in vertebrates.
PLoS Biol. (2017) Oct. 15(10):e2004045.
doi: 10.1371/journal.pbio.2004045

Payelleville A. et al.
DNA adenine methyltransferase (Dam) overexpression impairs Photorhabdus luminescens Motility and Virulence.
Front Microbiol. (2017) Sep. 8: 1671
doi: 10.3389/fmicb.2017.01671

Sun S. et al.
Fungal genome and mating system transitions facilitated by chromosomal translocations involving intercentromeric recombination.
PLoS Biol. (2017) Aug. 15(8):e2002527.
doi: 10.1371/journal.pbio.2002527

Farasin J. et al
Comparison of biofilm formation and motility processes in arsenic-resistant Thiomonas spp. strains revealed divergent response to arsenite.
Microb Biotechnol. (2017) Jul. 10(4):789-803.
doi: 10.1111/1751-7915.12556

Martinot E. et al.
The bile acid nuclear receptor FXRalpha is a critical regulator of Mouse germ cell fate.
Stem Cell Reports (2017) Jul. 9(1):315-328.
doi: 10.1016/j.stemcr.2017.05.036

Scelo G. et al.
Genome-wide association study identifies multiple risk loci for renal cell carcinoma.
Nat Commun. (2017) Jun. 8:15724.
doi: 10.1038/ncomms15724

Richer W. et al.
Embryonic signature distinguishes pediatric and adult rhabdoid tumors from other SMARCB1-deficient cancers.
Oncotarget (2017) May. 8(21):34245-34257.
doi: 10.18632/oncotarget.15939

Arguel M.J. et al.
A cost effective 5?selective single cell transcriptome profiling approach with improved UMI design.
Nucleic Acids Res. (2017) Apr. 45(7):e48.
doi: 10.1093/nar/gkw1242

Saintamand A. et al.
E(?) and 3'RR IgH enhancers show hierarchic unilateral dependence in mature B-cells.
Sci Rep. (2017) Mar. 7(1):442.
doi: 10.1038/s41598-017-00575-0

Arseneault M. et al.
Loss of chromosome Y leads to down regulation of KDM5D and KDM6C epigenetic modifiers in clear cell renal cell carcinoma.
Sci Rep. (2017) Mar. 7:44876.
doi: 10.1038/srep44876

Pivot X. et al.
Constitutional variants are not associated with HER2-positive breast cancer: results from the SIGNAL/PHARE clinical cohort.
NPJ Breast Cancer (2017) Feb. 3:4.
doi: 10.1038/s41523-017-0005-y

Mercier S. et al.
Expanding the spectrum of congenital myopathy linked to recessive mutations in SCN4A.
Neurology (2017) Jan. 88(4):414-416.
doi: 10.1212/WNL.0000000000003535

Muret K. et al.
Long noncoding RNA repertoire in chicken liver and adipose tissue.
Genet Sel Evol. (2017) Jan. 49(1):6.
doi: 10.1186/s12711-016-0275-0

Eggerbauer E. et al.
The recently discovered bokeloh bat lyssavirus: Insights into its genetic heterogeneity and spatial distribution in Europe and the population genetics of its primary host.
Advances in virus research (Elsevier), (2017) 99: 199-232.
doi: 10.1016/bs.aivir.2017.07.004

Warnke M. et al.
A patchwork pathway for oxygenase-independent degradation of side chain containing steroids.
Environ Microbiol. (2017) Nov. 19(11):4684-4699.
doi: 10.1111/1462-2920.13933

Kocher A. et al.
Evaluation of shortmitochondrial metabarcodes for the identification of Amazonian mammals.
Methods in Ecology and Evolution (2017) Oct. 8: 1276–1283.
doi: 10.1111/2041-210X.12729