Publications 2017

Galia W. et al.
Strand-specific transcriptomes of Enterohemorrhagic Escherichia coli in response to interactions with ground beef microbiota: interactions between microorganisms in raw meat.
BMC Genomics (2017) Aug.18(1):574.
doi: 10.1186/s12864-017-3957-2

Perrin S. et al.
Aozan: an automated post-sequencing data-processing pipeline.
Bioinformatics (2017) Jul. 33(14):2212-2213.
doi: 10.1093/bioinformatics/btx154

Bringel F. et al.
Genome sequence of the dichloromethane-degrading Bacterium Hyphomicrobium sp. strain GJ21.
Genome Announc. (2017) Jul. 5(30). pii: e00622-17.
doi: 10.1128/genomeA.00622-17

Mauger F. et al.
COLD-PCR technologies in the area of personalized medicine: Methodology and Applications.
Mol Diagn Ther. (2017) Jun. 21(3):269-283.
doi: 10.1007/s40291-016-0254-8

Boyer F. et al.
CSReport: A new computational tool designed for automatic analysis of class switch recombination junctions sequenced by high-throughput sequencing..
J Immunol. (2017) May.198(10):4148-4155.
doi: 10.4049/jimmunol.1601924

Mensous M. et al.
Diversity and evolution of plastomes in Saharan mimosoids:potential use for phylogenetic and population genetic studies.
Tree Genetics Genomes (2017) Apr . 13:48.
doi: 10.1007/s11295-017-1131-2

Zangari J. et al.
Rapid decay of engulfed extracellular miRNA by XRN1 exonuclease promotes transient epithelial-mesenchymal transition.
Nucleic Acids Res. (2017) Apr. 45(7):4131-4141.
doi: 10.1093/nar/gkw1284

Pratlong M. et al.
Evidence for a genetic sex determination in Cnidaria, the Mediterranean red coral (Corallium rubrum).
R. Soc. Open Sci. (2017) Mar. 4(3):160880.
doi: 10.1098/rsos.160880

Bougneres P. et al.
Using spatio-temporal surveillance data to test the infectious environment of children before type 1 diabetes diagnosis.
PLoS One (2017) Feb 2. 12(2):e0170658.
doi: 10.1371/journal.pone.0170658

Mazzitelli J-Y. et al.
De novo transcriptome sequencing and analysis of freshwater snail (Radix balthica) to discover genes and pathways affected by exposure to oxazepam.
Ecotoxicology (2017) Jan. 26: 127–140.
doi: 10.1007/s10646-016-1748-1

Bonan S. et al.
Membrane-bound ICAM-1 contributes to the onset of proinvasive tumor stroma by controlling acto-myosin contractility in carcinoma-associated fibroblasts.
Oncotarget. (2017) Jan. 8(1):1304-1320.
doi: 10.18632/oncotarget.13610

Flachsbart F. et al.
Identification and characterization of two functional variants in the human longevity gene FOXO3.
Nat Commun. 2017 Dec. 8(1):2063.
doi: 10.1038/s41467-017-02183-y

Chauvin C. et al.
High-throughput drug screening identifies Pazopanib and Clofilium Tosylate as promising treatments for Malignant Rhabdoid Tumors.
Cell Rep. (2017) Nov. 21(7):1737-1745.
doi: 10.1016/j.celrep.2017.10.076

Capela D. et al.
Recruitment of a lineage-specific virulence regulatorypathway promotes intracellular infection by a plant pathogen experimentally evolved into a legume symbiont.
Mol Biol Evol. (2017) Oct. 34(10):2503-2521.
doi: 10.1093/molbev/msx165

Terrat S. et al.
Mapping and predictive variations of soil bacterial richness across France.
PLoS One (2017) Oct. 12(10):e0186766.
doi: 10.1371/journal.pone.0186766

Rochat T. et al.
Genomic characterization of Flavobacterium psychrophilum serotypes and development of a multiplex PCR-based serotyping scheme.
Front in Microbiol.(2017) Sep. 8:1752.
doi: 10.3389/fmicb.2017.01752

Duarte M. et al.
Functional soil metagenomics: elucidation of polycyclic aromatic hydrocarbon degradation potential following 12 years of in situ bioremediation.
Environ Microbiol. (2017) Aug.19(8):2992-3011.
doi: 10.1111/1462-2920.13756

Thierion E. et al.
Krox20 hindbrain regulation incorporates multiple modes of cooperation between cis-acting elements.
PLoS Genet. (2017) Jul. 13(7):e1006903.
doi: 10.1371/journal.pgen.1006903

Dao LTM. et al.
Genome-wide characterization of mammalian promoters with distal enhancer functions.
Nature Genetics. (2017) Jul. 49(7):1073-1081.
doi: 10.1038/ng.3884

Saultier P. et al.
Macrothrombocytopenia and dense granule deficiency associated with FLI1 variants: ultrastructural and pathogenic features.
Haematologica (2017) Jun. 102(6):1006-1016.
doi: 10.3324/haematol.2016.153577

Cerisy T. et al.
Evolution of a biomass-fermenting Bacterium to resist lignin phenolics.
Appl Environ Microbiol. (2017) May. 83(11). pii: e00289-17.
doi: 10.1128/AEM.00289-17

Tarabay Y. et al.
Tex19 paralogs are new members of the piRNA pathway controlling retrotransposon suppression.
J Cell Sci. (2017) Apr. 130(8):1463-1474.
doi: 10.1242/jcs.188763

Hamidou Soumana I. et al.
Comparative genomics of Glossina palpalis gambiensis and G. morsitans morsitans to reveal gene orthologs involved in infection by Trypanosoma brucei gambiense.
Front Microbiol. (2017) Apr. 8:540.
doi: 10.3389/fmicb.2017.00540

Bohm J. et al.
ORAI1 mutations with distinct channel gating defects in tubular aggregate myopathy.
Human Mutation (2017).Mar. 38 (4): 426-438
doi: 10.1002/humu.23172

Bruel AL. et al.
Autosomal recessive truncating MAB21L1 mutation associated with a syndromic scrotal agenesis.
Clin Genet. (2017) Feb. 91(2):333-338.
doi: 10.1111/cge.12794

Costantino F. et al.
A family-based genome-wide association study reveals an association of spondyloarthritis with MAPK14.
Ann Rheum Dis. (2017) Jan. 76(1):310-314.
doi: 10.1136/annrheumdis-2016-209449

Rougemont Q. et al.
Inferring the demographic history underlying parallel genomic divergence among pairs of parasitic and non-parasitic lamprey ecotypes.
Mol Ecol. (2017) Jan. 26(1):142-162.
doi: 10.1111/mec.13664

Renault V. et al.
aCNViewer: Comprehensive genome-wide visualization of absolute copy number and copy neutral variations.
PLoS One (2017) Dec. 12(12):e0189334.
doi: 10.1371/journal.pone.0189334

Weill FX. et al.
Genomic history of the seventh pandemic of cholera in Africa.
Science (2017) Nov. 358(6364):785-789.
doi: 10.1126/science.aad5901

Auffret P. et al.
Draft genome sequence of enterohemorrhagic Escherichia coli O157:H7 strain MC2 isolated from cattlde in France.
Genome Announc. (2017) Oct. 5(40). pii: e01097-17.
doi: 10.1128/genomeA.01097-17