Publications 2018

Ates LS et al.
Unexpected Genomic and Phenotypic Diversity of Mycobacterium africanum Lineage 5 Affects Drug Resistance, Protein Secretion, and Immunogenicity
Genome Biology and Evolution 2018 10(8)
doi: 10.1093/gbe/evy145

Albert E et al.
Allele-specific expression and genetic determinants of transcriptomic variations in response to mild water deficit in tomato
The Plant Journal 2018 96(3
doi: 10.1111/tpj.14057

Indersie E et al.
Tracking cellular and molecular changes in a species-specific manner during experimental tumor progression $?ess$i$greater$in vivo$?ess$/i$greater$
Oncotarget 2018 9(22)
doi: 10.18632/oncotarget.24598

Duchaud E et al.
Genomic Diversity and Evolution of the Fish Pathogen Flavobacterium psychrophilum
Frontiers in Microbiology 2018 9
doi: 10.3389/fmicb.2018.00138

Belkhelfa S et al.
Complete Genome Sequence of the Facultative Methylotroph
Methylobacterium extorquens
TK 0001 Isolated from Soil in Poland
Genome Announcements 2018 6(8)
doi: 10.1128/genomeA.00018-18

Ledoux JB et al.
Postglacial range expansion shaped the spatial genetic structure~in a marine habitat-forming species: Implications for conservation plans in the Eastern Adriatic Sea
Journal of Biogeography 2018 45(12)
doi: 10.1111/jbi.13461

Rahimova R et al.
Identification of allosteric inhibitors of the ecto-5?-nucleotidase (CD73) targeting the dimer interface
PLOS Computational Biology 2018 14(1)
doi: 10.1371/journal.pcbi.1005943

Vizziano-Cantonnet D et al.
De novo transcriptome analysis to search for sex-differentiation genes in the Siberian sturgeon
General and Comparative Endocrinology 2018 268
doi: 10.1016/j.ygcen.2018.08.007

Willmann C et al.
Oral health status in historic population: Macroscopic and metagenomic evidence
PLOS ONE 2018 13(5)
doi: 10.1371/journal.pone.0196482

Appels R et al.
Shifting the limits in wheat research and breeding using a fully annotated reference genome
Science 2018 361(6403)
doi: 10.1126/science.aar7191

Legendre M et al.
Diversity and evolution of the emerging Pandoraviridae family
Nature Communications 2018 9(1)
doi: 10.1038/s41467-018-04698-4

Duployez N et al.
The stem cell-associated gene expression signature allows risk stratification in pediatric acute myeloid leukemia
Leukemia 2018 33(2)
doi: 10.1038/s41375-018-0227-5

Chang KW et al.
Stage-dependent piRNAs in chicken implicated roles in modulating male germ cell development
BMC Genomics 2018 19(1)
doi: 10.1186/s12864-018-4820-9

Marangoni E et al.
Capecitabine Efficacy Is Correlated with TYMP and RB1 Expression in PDX Established from Triple-Negative Breast Cancers
Clinical Cancer Research 2018 24(11)
doi: 10.1158/1078-0432.CCR-17-3490

Aubart M et al.
Association of modifiers and other genetic factors explain Marfan syndrome clinical variability
European Journal of Human Genetics 2018 26(12)
doi: 10.1038/s41431-018-0164-9

Czimmerer Z et al.
Extensive and functional overlap of the STAT6 and RXR cistromes in the active enhancer repertoire of human CD14$mathplus$ monocyte derived differentiating macrophages
Molecular and Cellular Endocrinology 2018 471
doi: 10.1016/j.mce.2017.07.034

Laugel-Haushalter V et al.
Genetic Evidence Supporting the Role of the Calcium Channel, CACNA1S, in Tooth Cusp and Root Patterning
Frontiers in Physiology 2018 9
doi: 10.3389/fphys.2018.01329

Tost J et al.
Epigenetic plasticity of eosinophils and other immune cell subsets in childhood asthma
The Lancet Respiratory Medicine 2018 6(5)
doi: 10.1016/s2213-2600(18)30051-1

Dembélé D et al.
Analysis of high-throughput biological data using their rank values
Statistical Methods in Medical Research 2018
doi: 10.1177/0962280218764187

Weill FX et al.
Genomic insights into the 2016-2017 cholera epidemic in Yemen
Nature 2019 565(7738)
doi: 10.1038/s41586-018-0818-3

Leitwein M et al.
Genomic consequences of a recent three-way admixture in supplemented wild brown trout populations revealed by local ancestry tracts
Molecular Ecology 2018 27(17
doi: 10.1111/mec.14816

Hooks KB et al.
New insights into diagnosis and therapeutic options for proliferative hepatoblastoma
Hepatology 2018 68(1)
doi: 10.1002/hep.29672

Pleydell DRJ et al.
Estimation of the dispersal distances of an aphid-borne virus in a patchy landscape
PLOS Computational Biology 2018 14(4)
doi: 10.1371/journal.pcbi.1006085

Turpin W et al.
The genomic and transcriptomic basis of the potential of Lactobacillus plantarum A6 to improve the nutritional quality of a cereal based fermented food
International Journal of Food Microbiology 2018 266
doi: 10.1016/j.ijfoodmicro.2017.10.011

Brousseau L et al.
New WGS data and annotation of the heterosomal vs. autosomal localization of Ostrinia scapulalis (Lepidoptera, Crambidae) nuclear genomic scaffolds
Data in Brief 2018 20
doi: 10.1016/j.dib.2018.08.011

Darnaud M et al.
Enteric Delivery of Regenerating Family Member 3 alpha Alters~the Intestinal Microbiota and Controls Inflammation in~Mice With~Colitis
Gastroenterology 2018 154(4
doi: 10.1053/j.gastro.2017.11.003

Wu X et al.
Developmental and cancer-associated plasticity of DNA replication preferentially targets GC-poor, lowly expressed and late-replicating regions
Nucleic Acids Research 2018 46(19)
doi: 10.1093/nar/gky797

Mat AM et al.
Oyster transcriptome response to Alexandrium exposure is related to saxitoxin load and characterized by disrupted digestion, energy balance and calcium and sodium signaling
Aquatic Toxicology 2018 199
doi:  10.1016/j.aquatox.2018.03.030

Arsène-Ploetze F et al.
Adaptation in toxic environments: comparative genomics of loci carrying antibiotic resistance genes derived from acid mine drainage waters
Environmental Science and Pollution Research 2017 25(2)
doi: 10.1007/s11356-017-0535-8

Legras JL et al.
Adaptation of S. cerevisiae to Fermented Food Environments Reveals Remarkable Genome Plasticity and the Footprints of Domestication
Molecular Biology and Evolution 2018 35(7)
doi: 10.1093/molbev/msy066