Publications 2018

Plainvert C et al.
A clone of the emergent Streptococcus pyogenes emm89 clade responsible for a large outbreak in a post-surgery oncology unit in France
Medical Microbiology and Immunology 2018 207(5-6)
doi: 10.1007/s00430-018-0546-1

Raymond O et al.

The Rosa genome provides new insights into the domestication of modern roses.

Nat Genet. 2018 50(6)

 doi: 10.1038/s41588-018-0110-3.


Karimi B et al.
Biogeography of soil bacteria and archaea across France
Science Advances 2018 4(7)
doi: 10.1126/sciadv.aat1808

Marlétaz F et al.
Amphioxus functional genomics and the origins of vertebrate gene regulation
Nature 2018 564(7734)
doi: 10.1038/s41586-018-0734-6

Bitetti A et al.
MicroRNA degradation by a conserved target RNA regulates animal behavior
Nature Structural & Molecular Biology 2018 25(3)
doi: 10.1038/s41594-018-0032-x

Liang X et al.
Targeted next-generation sequencing identifies clinically relevant somatic mutations in a large cohort of inflammatory breast cancer
Breast Cancer Research 2018 20(1)
doi: 10.1186/s13058-018-1007-x

Gitte B et al.
miRNA profiling identifies deregulated miRNAs associated with osteosarcoma development and time to metastasis in two large cohorts
Molecular Oncology 2017 12(1)
doi: 10.1002/1878-0261.12154

Calderaro J et al.
Systemic AA Amyloidosis Caused by Inflammatory Hepatocellular Adenoma
New England Journal of Medicine 2018 379(12)
doi: 10.1056/NEJMc1805673

Imbert-Bouteille M et al.
LARP7 variants and further delineation of the Alazami syndrome phenotypic spectrum among primordial dwarfisms: 2 sisters
European Journal of Medical Genetics 2019 62(3)
doi: 10.1016/j.ejmg.2018.07.003

Song MA et al.
Methylation of imprinted IGF2 regions is associated with total, visceral, and hepatic adiposity in postmenopausal women
Epigenetics 2018 13(8)
doi: 10.1080/15592294.2018.1518100

Quartier A et al.
Genes and Pathways Regulated by Androgens in Human Neural Cells, Potential Candidates for the Male Excess in Autism Spectrum Disorder
Biological Psychiatry 2018 84(4)
doi: 10.1016/j.biopsych.2018.01.002

Dickson LB et al.
Diverse laboratory colonies of Aedes aegypti harbor the same adult midgut bacterial microbiome
Parasites & Vectors 2018 11(1)
doi: 10.1186/s13071-018-2780-1

Singh P et al.
Genotype-Environment Interaction Shapes the Microbial Assemblage in Grapevine's Phyllosphere and Carposphere: An NGS Approach
Microorganisms 2018 6(4)
doi: 10.3390/microorganisms6040096

Rode NO et al.
How to optimize the precision of allele and haplotype frequency estimates using pooled-sequencing data
Molecular Ecology Resources 2017 18(2)
doi: 10.1111/1755-0998.12723

Bouju-Albert A et al.
Influence of lactate and acetate removal on the microbiota of French fresh pork sausages
Food Microbiology 2018 76
doi: 10.1016/

Branger C et al.
Extended-spectrum $p?beta$-lactamase-encoding genes are spreading on a wide range of Escherichia coli plasmids existing prior to the use of third-generation cephalosporins
Microbial Genomics 2018 4(9)
doi: 10.1099/mgen.0.000203

Pratx L et al.
Genome-wide expert annotation of the epigenetic machinery of the plant-parasitic nematodes Meloidogyne spp., with a focus on the asexually~reproducing species
BMC Genomics 2018 19(1)
doi: 10.1186/s12864-018-4686-x

Gauthier J et al.
Genetic footprints of adaptive divergence in the bracovirus of Cotesia sesamiae
identified by targeted resequencing
Molecular Ecology 2018 27(8)
doi: 10.1111/mec.14574

Boulay AC et al.
Connexin 43 Controls the Astrocyte Immunoregulatory Phenotype
Brain Sciences 2018 8(4)
doi: 10.3390/brainsci8040050

Bonin E et al.
Molecular subtyping of European swine influenza viruses and scaling to high-throughput analysis
Virology Journal 2018 15(1)
doi: 10.1186/s12985-018-0920-z

Alberto FL et al.
Convergent genomic signatures of domestication in sheep and goats
Nat Commun. 2018 9(1)
doi: 10.1038/s41467-018-03206-y

Kazamia E et al.
Endocytosis-mediated siderophore uptake as a strategy for Fe acquisition in diatoms
Science Advances 2018 4(5)
doi: 10.1126/sciadv.aar4536

Marchet C et al.
De novo clustering of long reads by gene from transcriptomics data
Nucleic Acids Research 2018 47(1)
doi: 10.1093/nar/gky834

Cacheux W et al.
Array comparative genomic hybridization identifies high level of PI3K/Akt/mTOR pathway alterations in anal cancer recurrences
Cancer Medicine 2018 7(7)
doi: 10.1002/cam4.1533

Lopez-Delisle L et al.
Activated ALK signals through the ERK–ETV5–RET pathway to drive neuroblastoma oncogenesis
Oncogene 2018 37(11)
doi: 10.1038/s41388-017-0039-5

Gitte B et al.
A Summary of the Biological Processes, Disease-Associated Changes and Clinical Applications of DNA Methylation
Springer New York 2017
doi: 10.1007/978-1-4939-7481-8_1

Ceyzériat K et al.
Modulation of astrocyte reactivity improves functional deficits in mouse models of Alzheimer's disease
Acta Neuropathologica Communications 2018 6(1)
doi: 10.1186/s40478-018-0606-1

Jonson PH et al.
Novel mutations in DNAJB6 cause LGMD1D and distal myopathy in French families
European Journal of Neurology 2018 25(5)
doi: 10.1111/ene.13598

Stengel B et al.
Risk profile, quality of life and care of patients with moderate and advanced CKD: The French CKD-REIN Cohort Study
Nephrology Dialysis Transplantation 2018 34(2)
doi: 10.1093/ndt/gfy058

Grüning B et al.
Bioconda: sustainable and comprehensive software distribution for the life sciences
Nature Methods 2018 15(7)
doi: 10.1038/s41592-018-0046-7