Publications 2018

Plainvert C et al.
A clone of the emergent Streptococcus pyogenes emm89 clade responsible for a large outbreak in a post-surgery oncology unit in France
Medical Microbiology and Immunology 2018 207(5-6)
doi: 10.1007/s00430-018-0546-1

Raymond O et al.

The Rosa genome provides new insights into the domestication of modern roses.

Nat Genet. 2018 50(6)

 doi: 10.1038/s41588-018-0110-3.


Cubry P et al.
The Rise and Fall of African Rice Cultivation Revealed by Analysis of 246 New Genomes
Current Biology 2018 28(14)
doi: 10.1016/j.cub.2018.05.066

Meng A et al.
A de novo approach to disentangle partner identity and function in holobiont systems
Microbiome 2018 6(1)
doi: 10.1186/s40168-018-0481-9

Giovannini-Chami L et al.
The “one airway, one disease” concept in light of Th2 inflammation
European Respiratory Journal 2018 52(4)
doi: 10.1183/13993003.00437-2018

Courel M et al.
GC content shapes mRNA decay and storage in human cells
Cold Spring Harbor Laboratory 2018
doi: 10.1101/373498

Renault AL et al.
Morphology and genomic hallmarks of breast tumours developed by ATM deleterious variant carriers
Breast Cancer Research 2018 20(1)
doi: 10.1186/s13058-018-0951-9

Baudrin LG et al.
Improved Microsatellite Instability Detection and Identification by Nuclease-Assisted Microsatellite Instability Enrichment Using HSP110 T17
Clinical Chemistry 2018 64(8)
doi: 10.1373/clinchem.2018.287490

de Haan HG et al.
Genome-Wide Association Study Identifies a Novel Genetic Risk Factor for Recurrent Venous Thrombosis
Circulation: Genomic and Precision Medicine 2018 11(2
doi: 10.1161/circgen.117.001827

Lornage X et al.
Novel SPEG Mutations in Congenital Myopathy without Centralized Nuclei
Journal of Neuromuscular Diseases 2018 5(2)
doi: 10.3233/JND-170265

Velasco G et al.
Comparative methylome analysis of ICF patients identifies heterochromatin loci that require ZBTB24, CDCA7 and HELLS for their methylated state
Human Molecular Genetics 2018 27(14)
doi: 10.1093/hmg/ddy130

Henriques A et al.
Sphingolipid Metabolism Is Dysregulated at Transcriptomic and Metabolic Levels in the Spinal Cord of an Animal Model of Amyotrophic Lateral Sclerosis
Frontiers in Molecular Neuroscience 2018 10
doi: 10.3389/fnmol.2017.00433

Dehecq M et al.
Nonsense-mediated mRNA decay involves two distinct Upf1-bound complexes
The EMBO Journal 2018 37(21)
doi: 10.15252/embj.201899278

Philippe C et al.
AICAR Antiproliferative Properties Involve the AMPK-Independent Activation of the Tumor Suppressors LATS 1 and 2
Neoplasia 2018 20(6)
doi: 10.1016/j.neo.2018.03.006

Szabo Q et al.
TADs are 3D structural units of higher-order chromosome organization in
Science Advances 2018 4(2)
doi: 10.1126/sciadv.aar8082

Poirier S et al.
Deciphering intra-species bacterial diversity of meat and seafood spoilage microbiota using gyrB amplicon sequencing: A comparative analysis with 16S rDNA V3-V4 amplicon sequencing
PLOS ONE 2018 13(9)
doi: 10.1371/journal.pone.0204629

Jaquiéry J et al.
Disentangling the Causes for Faster-X Evolution in Aphids
Genome Biology and Evolution 2018 10(2)
doi: 10.1093/gbe/evy015

Schroeder H et al.
Origins and genetic legacies of the Caribbean Taino
Proceedings of the National Academy of Sciences 2018 115(10)
doi: 10.1073/pnas.1716839115

Chikhi L et al.
The IICR (inverse instantaneous coalescence rate) as a summary of genomic diversity: insights into demographic inference and model choice
Heredity 2017 120(1)
doi: 10.1038/s41437-017-0005-6

van den Beek M et al.
Dual-layer transposon repression in heads of Drosophila melanogaster
RNA 2018 24(12)
doi: 10.1261/rna.067173.118

Payelleville A et al.
The complete methylome of an entomopathogenic bacterium reveals the existence of loci with unmethylated Adenines
Scientific Reports 2018 8(1)
doi: 10.1038/s41598-018-30620-5

Decelle J et al.
Worldwide Occurrence and Activity of the Reef-Building Coral Symbiont Symbiodinium in the Open Ocean
Current Biology 2018 28(22)
doi: 10.1016/j.cub.2018.09.024

Morard R et al.
Surface ocean metabarcoding confirms limited diversity in planktonic foraminifera but reveals unknown hyper-abundant lineages
Scientific Reports 2018 8(1)
doi: 10.1038/s41598-018-20833-z

Zarif H et al.
CD4$mathplus$ T Cells Have a Permissive Effect on Enriched Environment-Induced Hippocampus Synaptic Plasticity
Frontiers in Synaptic Neuroscience 2018 10
doi: 10.3389/fnsyn.2018.00014

Dubot C et al.
Comprehensive genomic profiling of head and neck squamous cell carcinoma reveals FGFR1 amplifications and tumour genomic alterations burden as prognostic biomarkers of survival
European Journal of Cancer 2018 91
doi: 10.1016/j.ejca.2017.12.016

Ronsmans A et al.
Transcription-dependent spreading of canonical yeast GATA factor across the body of highly expressed genes
Cold Spring Harbor Laboratory 2017
doi: 10.1101/238550

Bayard Q et al.
Cyclin A2/E1 activation defines a hepatocellular carcinoma subclass with a rearrangement signature of replication stress
Nature Communications 2018 9(1)
doi: 10.1038/s41467-018-07552-9

Delyon J et al.
STAT3 Mediates Nilotinib Response in KIT-Altered Melanoma: A Phase II Multicenter Trial of the French Skin Cancer Network
Journal of Investigative Dermatology 2018 138(1)
doi: 10.1016/j.jid.2017.07.839

Magalhães M et al.
Dynamic changes of DNA methylation and lung disease in cystic fibrosis: lessons from a monogenic disease
Epigenomics 2018 10(8)
doi: 10.2217/epi-2018-0005

Vuillaume ML et al.
Whole genome sequencing identifies a de novo 2.1?Mb balanced paracentric inversion disrupting FOXP1 and leading to severe intellectual disability
Clinica Chimica Acta 2018 485
doi: 10.1016/j.cca.2018.06.048