Publications 2016

Aubé J. et al.
The impact of long-term hydrocarbon exposure on the structure, activity, and biogeochemical functioning of microbial mats
Mar Pollut Bull. (2016) 111(1-2):115-25
doi: 10.1016/j.marpolbul.2016.07.023

Eckenfelder A. et al.
Argonaute proteins regulate HIV-1 multiply spliced RNA and viral production in a Dicer independent manner
Nucleic Acids Res. (2016)
doi: 10.1093/nar/gkw1289

Gies V. et al.
B cells differentiate in Human thymus and express AIRE
The Journal of Allergy and Clinical Immunology. (2016) pii: S0091-6749(16)31295-7
doi: 10.1016/j.jaci.2016.09.044

Jackson, R. et al.
Functional variants of human papillomavirus type 16 demonstrate host genome integration and transcriptional alterations corresponding to their unique cancer epidemiology
BMC Genomics. (2016) Nov 2.17(1):851. Erratum in: BMC Genomics. 2016 Dec 12.17 (1):1018
doi:

Mathe-Hubert, H. et al.
Comparative venomics of Psyttalia lounsburyi and P-concolor, two olive fruit fly parasitoids: a hypothetical role for a GH1 beta-glucosidase
Scientific Reports. (2016) 6: p. e35873
doi:

Pontvianne F. et al.
Identification of Nucleolus-Associated Chromatin Domains Reveals a Role for the Nucleolus in 3D Organization of the A. thaliana Genome
Cell Rep. (2016)16:1574-87
doi:

Glaser P. et al.
Demography and Intercontinental Spread of the USA300 Community-Acquired Methicillin-Resistant Staphylococcus aureus Lineage
MBio. (2016) 7(1):e02183-15
doi: 10.1128/mBio.02183-15

Merhej J. et al.
A Network of Paralogous Stress Response Transcription Factors in the Human Pathogen Candida glabrata
Front Microbiol. (2016) 7:645
doi: 10.3389/fmicb.2016.00645

Boritsch EC. et al.
Key experimental evidence of chromosomal DNA transfer among selected tuberculosis-causing mycobacteria
Proc Natl Acad Sci U S A. (2016) 113(35):9876-81
doi: 10.1073/pnas.1604921113

Hugonnet JE. et al.
Factors essential for L,D-transpeptidase-mediated peptidoglycan cross-linking and β-lactam resistance in Escherichia coli
Elife. (2016) pii: e19469
doi: 10.7554/eLife.19469

Lelandais G. et al.
ChIPseq in Yeast Species: From Chromatin Immunoprecipitation to High-Throughput Sequencing and Bioinformatics Data Analyses
Methods Mol Biol. (2016) 1361:185-202
doi: 10.1007/978-1-4939-3079-1_11

Helwi P. et al.
Vine nitrogen status and volatile thiols and their precursors from plot to transcriptome level
BMC Plant Biol . (2016) 16: 173
doi: 10.1186/s12870-016-0836-y

Gallouet AS. et al.
Macrophage production and activation are dependent on TRIM33
Oncotarget. (2016) 8(3):5111-5122
doi: 10.18632/oncotarget.13872

Molitor, A.M. et al.
The Arabidopsis hnRNP-Q Protein LIF2 and the PRC1 Subunit LHP1 Function in Concert to Regulate the Transcription of Stress-Responsive Genes
Plant Cell. (2016) 28(9): p. 2197-2211
doi:

Gautier M. et al.
Deciphering the wisent demographic and adaptive histories from individual whole-genome sequences
Mol Biol Evol. (2016) 33:2801-2814
doi:

Boutet G. et al.
SNP discovery and genetic mapping using genotyping by sequencing of whole genome genomic DNA from a pea RIL population
BMC Genomics. (2016) 17:121
doi: 10.1186/s12864-016-2447-2

Bussard A. et al.
Physiological adjustments and transcriptome reprogramming are involved in the acclimation to salinity gradients in diatoms
Environ Microbiol. (2016)
doi: 10.1111/1462-2920.13398

Khalfallah O. et al.
Depletion of the fragile X mental retardation protein in embryonic stem cells alters the kinetics of neurogenesis
Stem Cells. (2016)
doi: 10.1002/stem.2505

Nibourel O. et al.
Copy-number analysis identified new prognostic marker in acute myeloid leukemia
Leukemia. (2016)
doi: 10.1038/leu.2016.265

Redko Y. et al.
RNase J depletion leads to massive changes in mRNA abundance in Helicobacter pylori
RNA Biol. (2016) 13(2):243-53
doi: 10.1080/15476286.2015.1132141

Bandiera S. et al.
HCV-induced up-regulation of miR-146a-5p in hepatocytes promotes viral infection and deregulates metabolic pathways associated with liver disease pathogenesis
J Virol (2016) 90(14):6387-400
doi: 10.1128/JVI.00619-16

Arrigoni, R. et al.
The complete mitochondrial genome of Acanthastrea maxima (Cnidaria, Scleractinia, Lobophylliidae)
Mitochondrial DNA. (2016) 27(2): p. 927-928
doi:

Petitot, A.S. et al.
Dual RNA-seq reveals Meloidogyne graminicola transcriptome and candidate effectors during the interaction with rice plants
Molecular Plant Pathology. (2016) 17(6): p. 860-874
doi:

Bataillon T. et al.
A replicated climate change field experiment reveals rapid evolutionary response in an ecologically important soil invertebrate
Glob Chang Biol. (2016) 22:2370-9
doi:

Bernut A. et al.
Insights into the smooth-to-rough transitioning in Mycobacterium bolletii unravels a functional Tyr residue conserved in all mycobacterial MmpL family members
Mol Microbiol. (2016) 99(5):866-83
doi: 10.1111/mmi.13283

Popa A. et al.
RiboProfiling: a Bioconductor package for standard Ribo-seq pipeline processing
F1000Res. (2016) 5:1309
doi: 10.12688/f1000research.8964

Guerin C. et al.
Gene coexpression network analysis of oil biosynthesis in an interspecific backcross of oil palm
Plant J. (2016) 87:423-41
doi: 10.1111/tpj.13208

O'Grady GL. et al.
Variants in the Oxidoreductase PYROXD1 Cause Early-Onset Myopathy with Internalized Nuclei and Myofibrillar Disorganization
Am J Hum Genet. (2016) .99(5):1086-1105
doi: 10.1016/j.ajhg.2016.09.005

Galindo-Albarrán AO. et al.
CD8+ T Cells from Human Neonates Are Biased toward an Innate Immune Response
Cell reports. (2016)
doi: 10.1016/j.celrep.10.056

Freyermuth F. et al.
Splicing misregulation of SCN5A contributes to cardiac-conduction delay and heart arrhythmia in myotonic dystrophy
Nat Commun. (2016) 7: 11067
doi: 10.1038/ncomms11067