Publications 2015

Oravecz A. et al.
Ikaros mediates gene silencing in T cells through Polycomb repressive complex 2
Nat Commun. 2015 Nov 9;6:8823

Czernic P. et al.
Convergent Evolution of Endosymbiont Differentiation in Dalbergioid and Inverted Repeat-Lacking Clade Legumes Mediated by Nodule-Specific Cysteine-Rich Peptides
Plant physiology. 2015, 169(2):1254-1265

Kopylova E. et al.
Deciphering metatranscriptomic data
Methods in molecular biology. (Clifton, NJ), 2015, 1269:279-291

Rollat-Farnier PA. et al.
Two Host Clades, Two Bacterial Arsenals : Evolution through Gene Losses in Facultative Endosymbionts
Genome Biology and Evolution. 2015, 7(3):839-855

Ozmadenci D. et al.
Netrin-1 regulates somatic cell reprogramming and pluripotency maintenance
Nat Commun. 2015 6:7398

Bellini A. et al.
Deep sequencing reveals occurrence of sub-clonal ALK mutations in neuroblastoma at diagnosis
Clin. Cancer Res. 2015

Madoui MA. et al.
Genome assembly using Nanopore-guided long and error-free DNA reads
Bmc Genomics,. 2015, 16:327.
doi: 10.1186/s12864-015-1519-z

Seubert B. et al.
Tetraspanin CD63 acts as a pro-metastaticfactor via ?-catenin stabilization
Int J Cancer. 2015 May 15;136(10):2304-15
doi: 10.1002/ijc.29296

Boussaha M. et al.
Genome-Wide Study of Structural Variants in Bovine Holstein, Montbéliarde and Normande Dairy Breeds
PLoS One.. 2015 Aug 28;10(8):e0135931

Lluch J. et al.
The Characterization of Novel Tissue Microbiota Using an Optimized 16S Metagenomic Sequencing Pipeline
PLoS One. 2015 Nov 6;10(11):e0142334

Depaquit J. et al.
Mitochondrial DNA Intraspecific Variability in Sergentomyia minuta (Diptera : Psychodidae)
Journal of Medical Entomology. 2015, 52(5):819-828

Le Bescot N. et al.
Global patterns of pelagic dinoflagellate diversity across protist size classes unveiled by metabarcoding
Environmental Microbiology. 2015

Sayavedra L. et al.
Abundant toxin-related genes in the genomes of beneficial symbionts from deep-sea hydrothermal vent mussels
Elife. 2015 4 :e07966

Garcin G, Guiraud I, Lacroix M, Genthon C, Rialle S, Joujoux JM, Meunier L, Lavabre-Bertrand T, Stoebner PE, Le Gallic L
(2015) AMPK/HuR-Driven IL-20 Post-Transcriptional Regulation in Psoriatic Skin
J Invest Dermatol. 2015 135:2732-41

Smith M.J. et al.
Mutations in LZTR1 add to the complex heterogeneity of schwannomatosis
Neurology. 2015

Lichius A. et al.
Genome sequencing of the Trichoderma reesei QM9136 mutant identifies a truncation of the transcriptional regulator XYR1 as the cause for its cellulase-negative phenotype
BMC Genomics. 2015 Apr 20;16:326

Pesant S. et al.
Open science resources for the discovery and analysis of Tara Oceans data
Scientific data. 2015 2:150023.
doi: 10.1038/sdata.2015.23

Laureau, R. et al.
Extensive Recombination of a Yeast Diploid Hybrid through Meiotic Reversion
PLoS Genetics.
doi: 10.1371/journal.pgen.1006283

Mirzaa GM. et al.
Characterisation of mutations of the phosphoinositide-3-kinase regulatory subunit, PIK3R2, in perisylvian polymicrogyria: a next-generation sequencing study
Lancet Neurol. 2015, 14 (12): p. 1182-1195
doi: 10.1016/S1474-4422(15)00278

Dumas P. et al.
Spodoptera frugiperda (Lepidoptera : Noctuidae) host-plant variants : two host strains or two distinct species ?
Genetica. 2015, 143(3):305-316

esur I. et al.
The oak gene expression atlas : insights into Fagaceae genome evolution and the discovery of genes regulated during bud dormancy release
Bmc Genomics. 2015, 16:112

Sunagawa S. et al.
Tara Oceans C,Structure and function of the global ocean microbiome
Science. 2015 348(6237):1261359

Audo R. et al.
Identification of genes regulating TRAIL-induced apoptosis in rheumatoid arthritis fibroblasts-like synoviocytes
Genes Immun. 2015 16:462-9

Manfrini N. et al.
RNA-processing proteins regulate Mec1/ATR activation by promoting generation of RPA-coated ssDNA
EMBO Rep. 2015

Thierry A. et al.
Macrotene chromosomes provide insights to a new mechanism of high-order gene amplification in eukaryotes
Nat Commun.2015 Jan 30;6:6154

Biryukova I. et al.
Endogenous siRNAs and piRNAs derived from transposable elements and genes in the malaria vector mosquito Anopheles gambiae
BMC Genomics. 2015 Apr 10;16:278

Kocher A. et al.
Complete mitochondrial genome of Lutzomyia (Nyssomyia) umbratilis (Diptera: Psychodidae), the main vector of Leishmania guyanensis
Mitochondrial DNA. 2015 May 22:1-3

Sacco E. et al.
Mutation landscape of acquired cross-resistance to glycopeptide and ?-lactam antibiotics in Enterococcus faecium
Antimicrob Agents Chemother.2015 Sep;59(9):5306-15

Portal MM. et al.
TARDIS, a targeted RNA directional sequencing method for rare RNA discovery
Nat Protoc. 2015 Dec;10(12):1915-38

Esquer-Garrigos Y. et al.
Detecting natural hybridization between two vulnerable Andean pupfishes (Orestias agassizii and O-luteus) representative of the Altiplano endemic fisheries
Conservation Genetics. 2015, 16(3):717-727