Publications
Grégoire Siekaniec et al.
Identification of isolated or mixed strains from long reads: a challenge met on Streptococcus thermophilus using a MinION sequencer
Microbial Genomics 2021, vol. 7, issue 11
doi: 10.1099/mgen.0.000654
Aimeric Bruno et al.
BoardION: real-time monitoring of Oxford Nanopore sequencing instruments
BMC Bioinformatics 2021, vol. 22, issue 1
doi: 10.1186/s12859-021-04161-0
Romain Feron et al.
RADSex: A computational workflow to study sex determination using restriction site‐associated DNA sequencing data
Molecular Ecology Resources 2021
doi: 10.1111/1755-0998.13360
François Rousset et al.
The impact of genetic diversity on gene essentiality within the Escherichia coli species
Nature Microbiology 2021, vol. 6, issue 3
doi: 10.1038/s41564-020-00839-y
Ozvan Bocher et al.
Extension of SKAT to multi-category phenotypes through a geometrical interpretation
European Journal of Human Genetics 2021 vol.29
doi: 10.1038/s41431-020-00792-8
Benjamin Istace et al.
BiSCoT: improving large eukaryotic genome assemblies with optical maps
PeerJ 2020, vol. 8
doi: 10.7717/peerj.10150
Christophe Djemiel et al.
BIOCOM-PIPE: a new user-friendly metabarcoding pipeline for the characterization of microbial diversity from 16S, 18S and 23S rRNA gene amplicons
BMC Bioinformatics 2020, vol. 21, issue 1
doi: 10.1186/s12859-020-03829-3
Quentin Carradec et al.
A framework for in situ molecular characterization of coral holobionts using nanopore sequencing
Scientific Reports 2020, vol. 10, issue 1
doi: 10.1038/s41598-020-72589-0
Sara Castagnola et al.
Agonist-induced functional analysis and cell sorting associated with single-cell transcriptomics characterizes cell subtypes in normal and pathological brain
Genome Research 2020, vol. 30, issue 11
doi: 10.1101/gr.262717.120
Noémie Mazaré et al.
Local Translation in Perisynaptic Astrocytic Processes Is Specific and Changes after Fear Conditioning
Cell Reports 2020, vol. 32, issue 8
doi: 10.1016/j.celrep.2020.108076
Kevin Lebrigand et al.
High throughput error corrected Nanopore single cell transcriptome sequencing
Nature Communications 2020, vol. 11, issue 1
doi: 10.1038/s41467-020-17800-6
Mourdas Mohamed et al.
A Transposon Story: From TE Content to TE Dynamic Invasion of Drosophila Genomes Using the Single-Molecule Sequencing Technology from Oxford Nanopore
Cells 2020, vol. 9, issue 8
doi: 10.3390/cells9081776
Lucile Broseus et al.
TALC: Transcript-level Aware Long-read Correction
Bioinformatics 2020, vol. 36, issue 20
doi: 10.1093/bioinformatics/btaa634
Magali Hennion et al.
FORK-seq: replication landscape of the Saccharomyces cerevisiae genome by nanopore sequencing
Genome Biology 2020, vol. 21, issue 1
doi: 10.1186/s13059-020-02013-3
Emmanuelle Jeannot et al.
A single droplet digital PCR for ESR1 activating mutations detection in plasma
Oncogene 2020, vol. 39, issue 14
doi: 10.1038/s41388-020-1174-y
Olivier Zemb et al.
Absolute quantitation of microbes using 16S rRNA gene metabarcoding: A rapid normalization of relative abundances by quantitative PCR targeting a 16S rRNA gene spike‐in standard
MicrobiologyOpen 2020, vol. 9, issue 3
doi: 10.1002/mbo3.977
Gabriel Gorsky et al.
Expanding Tara Oceans Protocols for Underway, Ecosystemic Sampling of the Ocean-Atmosphere Interface During Tara Pacific Expedition (2016–2018)
Frontiers in Marine Science 2019, vol. 6
doi: 10.3389/fmars.2019.00750
Nicolas Milon et al.
A tunable filter for high molecular weight DNA selection and linked-read sequencing
Lab on a Chip 2019, vol. 20, issue 1
doi: 10.1039/c9lc00965e
Verena A. Kottler et al.
Independent Origin of XY and ZW Sex Determination Mechanisms in Mosquitofish Sister Species
Genetics 2019, vol. 214, issue 1
doi: 10.1534/genetics.119.302698
Nassima Illikoud et al.
Transcriptome and Volatilome Analysis During Growth of Brochothrix thermosphacta in Food: Role of Food Substrate and Strain Specificity for the Expression of Spoilage Functions
Frontiers in Microbiology 2019, vol. 10
doi: 10.3389/fmicb.2019.02527
M. Serra et al.
Integrated droplet microfluidic device for magnetic particles handling: Application to DNA size selection in NGS libraries preparation
Sensors and Actuators B: Chemical 2019, vol. 305
doi: 10.1016/j.snb.2019.127346
Camille Sessegolo et al.
Transcriptome profiling of mouse samples using nanopore sequencing of cDNA and RNA molecules
Scientific Reports 2019, vol. 9, issue 1
doi: 10.1038/s41598-019-51470-9
Julien Champagne et al.
TAG-RNAi overcomes off-target effects in cancer models
Oncogene 2019, vol. 39, issue 4
doi: 10.1038/s41388-019-1020-2
Sandra Ruiz García et al.
Novel dynamics of human mucociliary differentiation revealed by single-cell RNA sequencing of nasal epithelial cultures
Development 2019
doi: 10.1242/dev.177428
Antoine Daunay et al.
Low temperature isothermal amplification of microsatellites drastically reduces stutter artifact formation and improves microsatellite instability detection in cancer
Nucleic Acids Research 2019, vol. 47, issue 21
doi: 10.1093/nar/gkz811
Laurence Slembrouck et al.
Decentralization of Next-Generation RNA Sequencing-Based MammaPrint® and BluePrint® Kit at University Hospitals Leuven and Curie Institute Paris
Translational Oncology 2019, vol. 12, issue 12
doi: 10.1016/j.tranon.2019.08.008
Fabienne Levi-Acobas et al.
Compatibility of 5-ethynyl-2′F-ANA UTP with in vitro selection for the generation of base-modified, nuclease resistant aptamers
Organic & Biomolecular Chemistry 2019, vol. 17, issue 35
doi: 10.1039/c9ob01515a
Julie Piccand et al.
Rfx6 promotes the differentiation of peptide-secreting enteroendocrine cells while repressing genetic programs controlling serotonin production
Molecular Metabolism 2019, vol. 29
doi: 10.1016/j.molmet.2019.08.007
Luc Cabel et al.
Abstract 2298: Monitoring of circulating tumor DNA in non metastatic gastric cancer
Clinical Research (Excluding Clinical Trials) 2019
doi: 10.1158/1538-7445.am2019-2298
Christelle Reynès et al.
ISoLDE: a data-driven statistical method for the inference of allelic imbalance in datasets with reciprocal crosses
Bioinformatics 2019
doi: 10.1093/bioinformatics/btz564