Publications 2021

Aimeric Bruno et al.
BoardION: real-time monitoring of Oxford Nanopore sequencing instruments
BMC Bioinformatics 2021, vol. 22, issue 1
doi: 10.1186/s12859-021-04161-0

Romain Feron et al.
RADSex: A computational workflow to study sex determination using restriction site‐associated DNA sequencing data
Molecular Ecology Resources 2021
doi: 10.1111/1755-0998.13360

François Rousset et al.
The impact of genetic diversity on gene essentiality within the Escherichia coli species
Nature Microbiology 2021, vol. 6, issue 3
doi: 10.1038/s41564-020-00839-y

Ozvan Bocher et al.
Extension of SKAT to multi-category phenotypes through a geometrical interpretation
European Journal of Human Genetics 2021
doi: 10.1038/s41431-020-00792-8

Benjamin Istace et al.
BiSCoT: improving large eukaryotic genome assemblies with optical maps
PeerJ 2020, vol. 8
doi: 10.7717/peerj.10150

Christophe Djemiel et al.
BIOCOM-PIPE: a new user-friendly metabarcoding pipeline for the characterization of microbial diversity from 16S, 18S and 23S rRNA gene amplicons
BMC Bioinformatics 2020, vol. 21, issue 1
doi: 10.1186/s12859-020-03829-3

Quentin Carradec et al.
A framework for in situ molecular characterization of coral holobionts using nanopore sequencing
Scientific Reports 2020, vol. 10, issue 1
doi: 10.1038/s41598-020-72589-0

Sara Castagnola et al.
Agonist-induced functional analysis and cell sorting associated with single-cell transcriptomics characterizes cell subtypes in normal and pathological brain
Genome Research 2020, vol. 30, issue 11
doi: 10.1101/gr.262717.120

Noémie Mazaré et al.
Local Translation in Perisynaptic Astrocytic Processes Is Specific and Changes after Fear Conditioning
Cell Reports 2020, vol. 32, issue 8
doi: 10.1016/j.celrep.2020.108076

Kevin Lebrigand et al.
High throughput error corrected Nanopore single cell transcriptome sequencing
Nature Communications 2020, vol. 11, issue 1
doi: 10.1038/s41467-020-17800-6

Mourdas Mohamed et al.
A Transposon Story: From TE Content to TE Dynamic Invasion of Drosophila Genomes Using the Single-Molecule Sequencing Technology from Oxford Nanopore
Cells 2020, vol. 9, issue 8
doi: 10.3390/cells9081776

Magali Hennion et al.
FORK-seq: replication landscape of the Saccharomyces cerevisiae genome by nanopore sequencing
Genome Biology 2020, vol. 21, issue 1
doi: 10.1186/s13059-020-02013-3

Olivier Zemb et al.
Absolute quantitation of microbes using 16S rRNA gene metabarcoding: A rapid normalization of relative abundances by quantitative PCR targeting a 16S rRNA gene spike‐in standard
MicrobiologyOpen 2020, vol. 9, issue 3
doi: 10.1002/mbo3.977

Gabriel Gorsky et al.
Expanding Tara Oceans Protocols for Underway, Ecosystemic Sampling of the Ocean-Atmosphere Interface During Tara Pacific Expedition (2016–2018)
Frontiers in Marine Science 2019, vol. 6
doi: 10.3389/fmars.2019.00750

Nicolas Milon et al.
A tunable filter for high molecular weight DNA selection and linked-read sequencing
Lab on a Chip 2019, vol. 20, issue 1
doi: 10.1039/c9lc00965e

Verena A. Kottler et al.
Independent Origin of XY and ZW Sex Determination Mechanisms in Mosquitofish Sister Species
Genetics 2019, vol. 214, issue 1
doi: 10.1534/genetics.119.302698

Nassima Illikoud et al.
Transcriptome and Volatilome Analysis During Growth of Brochothrix thermosphacta in Food: Role of Food Substrate and Strain Specificity for the Expression of Spoilage Functions
Frontiers in Microbiology 2019, vol. 10
doi: 10.3389/fmicb.2019.02527

M. Serra et al.
Integrated droplet microfluidic device for magnetic particles handling: Application to DNA size selection in NGS libraries preparation
Sensors and Actuators B: Chemical 2019, vol. 305
doi: 10.1016/j.snb.2019.127346

Camille Sessegolo et al.
Transcriptome profiling of mouse samples using nanopore sequencing of cDNA and RNA molecules
Scientific Reports 2019, vol. 9, issue 1
doi: 10.1038/s41598-019-51470-9

Julien Champagne et al.
TAG-RNAi overcomes off-target effects in cancer models
Oncogene 2019, vol. 39, issue 4
doi: 10.1038/s41388-019-1020-2

Sandra Ruiz García et al.
Novel dynamics of human mucociliary differentiation revealed by single-cell RNA sequencing of nasal epithelial cultures
Development 2019
doi: 10.1242/dev.177428

Antoine Daunay et al.
Low temperature isothermal amplification of microsatellites drastically reduces stutter artifact formation and improves microsatellite instability detection in cancer
Nucleic Acids Research 2019, vol. 47, issue 21
doi: 10.1093/nar/gkz811

Laurence Slembrouck et al.
Decentralization of Next-Generation RNA Sequencing-Based MammaPrint® and BluePrint® Kit at University Hospitals Leuven and Curie Institute Paris
Translational Oncology 2019, vol. 12, issue 12
doi: 10.1016/j.tranon.2019.08.008

Fabienne Levi-Acobas et al.
Compatibility of 5-ethynyl-2′F-ANA UTP with in vitro selection for the generation of base-modified, nuclease resistant aptamers
Organic & Biomolecular Chemistry 2019, vol. 17, issue 35
doi: 10.1039/c9ob01515a

Julie Piccand et al.
Rfx6 promotes the differentiation of peptide-secreting enteroendocrine cells while repressing genetic programs controlling serotonin production
Molecular Metabolism 2019, vol. 29
doi: 10.1016/j.molmet.2019.08.007

Luc Cabel et al.
Abstract 2298: Monitoring of circulating tumor DNA in non metastatic gastric cancer
Clinical Research (Excluding Clinical Trials) 2019
doi: 10.1158/1538-7445.am2019-2298

Christelle Reynès et al.
ISoLDE: a data-driven statistical method for the inference of allelic imbalance in datasets with reciprocal crosses
Bioinformatics 2019
doi: 10.1093/bioinformatics/btz564

Kévin Cassinari et al.
A Simple, Universal, and Cost-Efficient Digital PCR Method for the Targeted Analysis of Copy Number Variations
Clinical Chemistry 2019, vol. 65, issue 9
doi: 10.1373/clinchem.2019.304246

Christophe Délye et al.
Harnessing the power of next‐generation sequencing technologies to the purpose of high‐throughput pesticide resistance diagnosis
Pest Management Science 2019, vol. 76, issue 2
doi: 10.1002/ps.5543

Antoine Daunay et al.
Evaluation of six blood-based age prediction models using DNA methylation analysis by pyrosequencing
Scientific Reports 2019, vol. 9, issue 1
doi: 10.1038/s41598-019-45197-w