Bioinformatics Platform of Montpellier ATGC
Expertise
- Transcriptome, Translactome: Analysis of differential gene expression using RNA-seq data, Polysome-sequencing
- Translatome: Analysis of Ribo-seq data, identification of ORFs
- De novo transcriptome assembly (RNA-seq)
- Hybrid correction of long reads DNA-seq or RNA-seq
- Metabarcoding: analysis of the phylogenetic placement of reads
- Genomic analysis: search for mutations, identification of replication origins
Equipments
- University of Montpellier mesocentre server (MESO@LR)
- Compute server 124 GB of memory, 16 cores
- Disk bay 50 TB
The platform is staffed by 2 engineers and receives technical support from LIRMM.
Main achievements
Software
- Software for genomics: dipwmsearch, LoRDEC, LoRMA, CRAC, MPSCAN, Motif, MSAlign, STAR
- Metagenomics/metabarcoding software: PK, EPIK, SHERPAS, PEWO
- Phylogenetic analysis software: PhyML, FastME, SMS, BIONJ, AquaPony
- Translatome software: RSCURS (condosn biased analysis).
Projects
- Transcriptome and joint translatome for cancerology
- Analysis of origin of replication sequencing (similar to ChIP-seq)
- Genomic or assembly analyses for various species: algae, mice, coffee, sturgeon, plants, etc.
Last update March 2025
Labels
Institut Français de Bioinformatique (IFB)
France Génomique
IBISA
RENABI
Cancéropôle Grand Sud Ouest
Platform Managment
Eric Rivals, Stéphane Guindon
Laboratoire d’Informatique, de Robotique et de Microélectronique de Montpellier (LIRMM)
CNRS, Université de Montpellier
Contacts
Eric Rivals : atgc-hts@lirmm.fr
tel : 04 67 41 86 64
For further information
