Publications 2023

Cyril Esnault et al.
G4access identifies G-quadruplexes and their associations with open chromatin and imprinting control regions
Nature Genetics 2023
doi: 10.1038/s41588-023-01437-4

Cyril Esnault et al.
G4access identifies G-quadruplexes and their associations with open chromatin and imprinting control regions
Nature Genetics 2023, vol. 55, issue 8
doi: 10.1038/s41588-023-01437-4

Eoghan King et al.
Paraburkholderia phytofirmans PsJN colonization of rice endosphere triggers an atypical transcriptomic response compared to rice native Burkholderia s.l. endophytes
Scientific Reports 2023, vol. 13, issue 1
doi: 10.1038/s41598-023-37314-7

Frédérik Oger et al.
Pharmacological HDAC inhibition impairs pancreatic β-cell function through an epigenome-wide reprogramming
iScience 2023, vol. 26, issue 7
doi: 10.1016/j.isci.2023.107231

Thomas Cokelaer et al.
Reprohackathons: promoting reproducibility in bioinformatics through training
Bioinformatics 2023, vol. 39, issue Supplement_1
doi: 10.1093/bioinformatics/btad227

Lola Welsch et al.
Mu Opioid Receptor–Positive Neurons in the Dorsal Raphe Nucleus Are Impaired by Morphine Abstinence
Biological Psychiatry 2023, vol. 94, issue 11
doi: 10.1016/j.biopsych.2023.06.024

Isabelle Busseau et al.
Evaluation of microRNA variant maturation prior to genome edition
Biochimie 2023, vol. 217
doi: 10.1016/j.biochi.2023.06.007

Mathias Boulanger et al.
DeSUMOylation of chromatin-bound proteins limits the rapid transcriptional reprogramming induced by daunorubicin in acute myeloid leukemias
Nucleic Acids Research 2023, vol. 51, issue 16
doi: 10.1093/nar/gkad581

Manuel Rodrigues et al.
Nivolumab plus chemoradiotherapy in locally-advanced cervical cancer: the NICOL phase 1 trial
Nature Communications 2023, vol. 14, issue 1
doi: 10.1038/s41467-023-39383-8

Marta Lourenço et al.
Phages against Noncapsulated Klebsiella pneumoniae: Broader Host range, Slower Resistance
Microbiology Spectrum 2023
doi: 10.1128/spectrum.04812-22

Guillaume Davidson et al.
Mesenchymal-like Tumor Cells and Myofibroblastic Cancer-Associated Fibroblasts Are Associated with Progression and Immunotherapy Response of Clear Cell Renal Cell Carcinoma
Cancer Research 2023, vol. 83, issue 17
doi: 10.1158/0008-5472.can-22-3034

Carlo Yague-Sanz et al.
Chromatin remodeling by Pol II primes efficient Pol III transcription
Nature Communications 2023, vol. 14, issue 1
doi: 10.1038/s41467-023-39387-4

Laura Tzeplaeff et al.
Mutant FUS induces chromatin reorganization in the hippocampus and alters memory processes
Progress in Neurobiology 2023, vol. 227
doi: 10.1016/j.pneurobio.2023.102483

Pauline Auffret et al.
Transgenerational exposure to ocean acidification impacts the hepatic transcriptome of European sea bass (Dicentrarchus labrax)
BMC Genomics 2023, vol. 24, issue 1
doi: 10.1186/s12864-023-09353-x

Pauline Auffret et al.
Transgenerational exposure to ocean acidification impacts the hepatic transcriptome of European sea bass (Dicentrarchus labrax)
BMC Genomics 2023, vol. 24, issue 1
doi: 10.1186/s12864-023-09353-x

Louciné Mitoyan et al.
Defining Anorectal Transition Zone Heterogeneity Using Single-Cell RNA Sequencing
Methods in Molecular Biology 2023
doi: 10.1007/978-1-0716-3076-1_8

Alex Clavería-Cabello et al.
Identification and experimental validation of druggable epigenetic targets in hepatoblastoma
Journal of Hepatology 2023, vol. 79, issue 4
doi: 10.1016/j.jhep.2023.05.031

Lisa Sikkema et al.
An integrated cell atlas of the lung in health and disease
Nature Medicine 2023, vol. 29, issue 6
doi: 10.1038/s41591-023-02327-2

Guillaume Martin et al.
Shared pedigree relationships and transmission of unreduced gametes in cultivated banana
Annals of Botany 2023
doi: 10.1093/aob/mcad065

Caroline Belser et al.
Integrative omics framework for characterization of coral reef ecosystems from the Tara Pacific expedition
Scientific Data 2023, vol. 10, issue 1
doi: 10.1038/s41597-023-02204-0

Fabien Lombard et al.
Open science resources from the Tara Pacific expedition across coral reef and surface ocean ecosystems
Scientific Data 2023, vol. 10, issue 1
doi: 10.1038/s41597-022-01757-w

Alex J. Veglia et al.
Endogenous viral elements reveal associations between a non-retroviral RNA virus and symbiotic dinoflagellate genomes
Communications Biology 2023, vol. 6, issue 1
doi: 10.1038/s42003-023-04917-9

Benjamin Noel et al.
Pervasive tandem duplications and convergent evolution shape coral genomes
Genome Biology 2023, vol. 24, issue 1
doi: 10.1186/s13059-023-02960-7

Pierre E. Galand et al.
Diversity of the Pacific Ocean coral reef microbiome
Nature Communications 2023, vol. 14, issue 1
doi: 10.1038/s41467-023-38500-x

Alice Rouan et al.
Telomere DNA length regulation is influenced by seasonal temperature differences in short-lived but not in long-lived reef-building corals
Nature Communications 2023, vol. 14, issue 1
doi: 10.1038/s41467-023-38499-1

Corentin Hochart et al.
Ecology of Endozoicomonadaceae in three coral genera across the Pacific Ocean
Nature Communications 2023, vol. 14, issue 1
doi: 10.1038/s41467-023-38502-9

Eric J. Armstrong et al.
Host transcriptomic plasticity and photosymbiotic fidelity underpin Pocillopora acclimatization across thermal regimes in the Pacific Ocean
Nature Communications 2023, vol. 14, issue 1
doi: 10.1038/s41467-023-38610-6

Serge Planes et al.
Insights and achievements from the Tara Pacific expedition
Nature Communications 2023, vol. 14, issue 1
doi: 10.1038/s41467-023-38896-6

Emma Guilbaud et al.
Cholesterol efflux pathways hinder KRAS-driven lung tumor progenitor cell expansion
Cell Stem Cell 2023, vol. 30, issue 6
doi: 10.1016/j.stem.2023.05.005

Adeline Ribeiro E. Silva et al.
Overexpression of Eimeria tenella Rhoptry Kinase 2 Induces Early Production of Schizonts
Microbiology Spectrum 2023, vol. 11, issue 4
doi: 10.1128/spectrum.00137-23