Sequencing Platform of Marseille
The platform “Transcriptomics and Genomics of Marseille-Luminy” (TGML) is affiliated to the laboratory “Theory and Approaches of Genomic Complexity” (TAGC, Inserm U1090, Pr P. Rihet), and located in the Science Park of Luminy (Aix Marseille University).
This platform provides public and private sector researchers with access to transciptome, genomics and epigenomics analysis. The TGML offers its users and collaborators a wide range of experimental and bioinformatics approaches dedicated to the analysis of different types of DNA chips, and to high-throughput sequencing.
Expertise
- Transcriptomics : RNA-seq, DNA chips (DGE, miRNA, CGH)
- Genomics : Targeted re-sequencing, complete exome, SNV, small / large IndDels, etc.
- Epigenomics : ChIP-seq, FAIRE-seq / ATAC-seq, Mnase-seq, 3C-seq, 4C-seq
- Bioinformatics analysis : on demand according to the project
- In development : Single-cell and long-read
Equipments
- Sequencing : NextSeq 500 (Illumina)
- Single-cell and Long read: Chromium Controller (10x genomics)
- Scanner : High-Resolution Microarray (Agilent)
- Robots : EVO 150 (Tecan), Apollo-324 (WaferGen) and Fragment Analyzer (Advanced Analytical)
Computer cluster
- Computing power :
- 18 nodes
- 288 cors
- 5 TB RAM
- Data storage : 1 bay with gpfs of 220 TB
Computer tools
- GeVarA software for the analysis of genomic variants
- Custom conversion and analysis tools (wig, bed, sam, etc.)
- Under development : Workflow development for transcriptome, genome and epigenome analysis
Certification / Quality Assurance
The entire activity of the platform is certified ISO 9001:2015 and NFX 50-900:2016
Labels
GIS IBiSA, Cancéropôle PACA, CoReBio PACA, Plateforme technologique AMU
Platform Managment
Béatrice Loriod
Campus Universitaire de Luminy
13009 Marseille
TAGC U1090
Inserm, Aix Marseille Université
Contacts
Béatrice Loriod : beatrice.loriod@inserm.fr
04 91 82 87 13
For further information
