Publications
Lisa Mazéas et al.
Candidate genes involved in biosynthesis and degradation of the main extracellular matrix polysaccharides of brown algae and their probable evolutionary history
BMC Genomics 2024, vol. 25, issue 1
doi: 10.1186/s12864-024-10811-3
Marinna Gaudin et al.
Ecological associations distribution modelling of marine plankton at a global scale
Philosophical Transactions of the Royal Society B: Biological Sciences 2024, vol. 379, issue 1909
doi: 10.1098/rstb.2023.0169
Nils Giordano et al.
Genome-scale community modelling reveals conserved metabolic cross-feedings in epipelagic bacterioplankton communities
Nature Communications 2024, vol. 15, issue 1
doi: 10.1038/s41467-024-46374-w
Téo Lemane et al.
Indexing and real-time user-friendly queries in terabyte-sized complex genomic datasets with kmindex and ORA
Nature Computational Science 2024, vol. 4, issue 2
doi: 10.1038/s43588-024-00596-6
Roy El Hourany et al.
Linking satellites to genes with machine learning to estimate phytoplankton community structure from space
Ocean Science 2024, vol. 20, issue 1
doi: 10.5194/os-20-217-2024
Céline Loot et al.
Integron cassettes integrate into bacterial genomes via widespread non-classical attG sites
Nature Microbiology 2024, vol. 9, issue 1
doi: 10.1038/s41564-023-01548-y
Sofia Rigou et al.
Pithoviruses Are Invaded by Repeats That Contribute to Their Evolution and Divergence from Cedratviruses
Molecular Biology and Evolution 2023, vol. 40, issue 11
doi: 10.1093/molbev/msad244
Hiroto Kaneko et al.
Predicting global distributions of eukaryotic plankton communities from satellite data
ISME Communications 2023, vol. 3, issue 1
doi: 10.1038/s43705-023-00308-7
Maryam Karimi et al.
A Case-Only Genome-Wide Interaction Study of Smoking and Bladder Cancer Risk: Results from the COBLAnCE Cohort
Cancers 2023, vol. 15, issue 17
doi: 10.3390/cancers15174218
Angelina Beavogui et al.
The defensome of complex bacterial communities
2023
doi: 10.1101/2023.08.12.553040
Thomas Cokelaer et al.
Reprohackathons: promoting reproducibility in bioinformatics through training
Bioinformatics 2023, vol. 39, issue Supplement_1
doi: 10.1093/bioinformatics/btad227
Gaëlle Munsch et al.
Genome-wide association study of a semicontinuous trait: illustration of the impact of the modeling strategy through the study of Neutrophil Extracellular Traps levels
NAR Genomics and Bioinformatics 2023, vol. 5, issue 2
doi: 10.1093/nargab/lqad062
Lisa Sikkema et al.
An integrated cell atlas of the lung in health and disease
Nature Medicine 2023, vol. 29, issue 6
doi: 10.1038/s41591-023-02327-2
Guillaume Martin et al.
Shared pedigree relationships and transmission of unreduced gametes in cultivated banana
Annals of Botany 2023
doi: 10.1093/aob/mcad065
Ricardo Cortez Cardoso Penha et al.
Common genetic variations in telomere length genes and lung cancer: a Mendelian randomisation study and its novel application in lung tumour transcriptome
eLife 2023, vol. 12
doi: 10.7554/elife.83118
François Lecoquierre et al.
High diagnostic potential of short and long read genome sequencing with transcriptome analysis in exome-negative developmental disorders
Human Genetics 2023, vol. 142, issue 6
doi: 10.1007/s00439-023-02553-1
Lény Calvez et al.
Meiotic Behaviors of Allotetraploid Citrus Drive the Interspecific Recombination Landscape, the Genetic Structures, and Traits Inheritance in Tetrazyg Progenies Aiming to Select New Rootstocks
Plants 2023, vol. 12, issue 8
doi: 10.3390/plants12081630
Miriam Riquelme-Perez et al.
DEVEA: an interactive shiny application for Differential Expression analysis, data Visualization and Enrichment Analysis of transcriptomics data
F1000Research 2023, vol. 11
doi: 10.12688/f1000research.122949.2
Sophie Mieszkin et al.
Scleromatobacter humisilvae gen. nov., sp. nov., a novel bacterium isolated from oak forest soil
International Journal of Systematic and Evolutionary Microbiology 2023, vol. 73, issue 3
doi: 10.1099/ijsem.0.005793
Hugo Doré et al.
Differential global distribution of marine picocyanobacteria gene clusters reveals distinct niche-related adaptive strategies
The ISME Journal 2023
doi: 10.1038/s41396-023-01386-0
Tranchant-Dubreuil Christine et al.
FrangiPANe, a tool for creating a panreference using left behind reads
NAR Genomics and Bioinformatics 2023, vol. 5, issue 1
doi: 10.1093/nargab/lqad013
Yaqun Liu et al.
OKseqHMM: a genome-wide replication fork directionality analysis toolkit
Nucleic Acids Research 2023, vol. 51, issue 4
doi: 10.1093/nar/gkac1239
Charlotte Nef et al.
Whole-genome scanning reveals environmental selection mechanisms that shape diversity in populations of the epipelagic diatom Chaetoceros
PLOS Biology 2022, vol. 20, issue 11
doi: 10.1371/journal.pbio.3001893
Pauline Chaignaud et al.
A Methylotrophic Bacterium Growing with the Antidiabetic Drug Metformin as Its Sole Carbon, Nitrogen and Energy Source
Microorganisms 2022, vol. 10, issue 11
doi: 10.3390/microorganisms10112302
Yue Jiao et al.
Association and performance of polygenic risk scores for breast cancer among French women presenting or not a familial predisposition to the disease
European Journal of Cancer 2022, vol. 179
doi: 10.1016/j.ejca.2022.11.007
Eugen Pfeifer et al.
Phage-Plasmids Spread Antibiotic Resistance Genes through Infection and Lysogenic Conversion
mBio 2022, vol. 13, issue 5
doi: 10.1128/mbio.01851-22
Luisa Alessandra Atehortua Martinez et al.
Individual differences in cocaine-induced conditioned place preference in male rats: Behavioral and transcriptomic evidence
Journal of Psychopharmacology 2022, vol. 36, issue 10
doi: 10.1177/02698811221123047
L. Mangiante et al.
OA04.05 MESOMICS Project: Using Whole-Genome Sequencing Data to Fill the Gaps in Malignant Pleural Mesothelioma Molecular Studies
Journal of Thoracic Oncology 2022, vol. 17, issue 9
doi: 10.1016/j.jtho.2022.07.029
Claudia Pogoreutz et al.
High live coral cover and incidence of a pink-spotted coral phenotype on remote reefs off Clipperton Island, Tropical Eastern Pacific
Marine Biology 2022, vol. 169, issue 9
doi: 10.1007/s00227-022-04101-3
Jérôme Mariette et al.
An open-source tool to assess the carbon footprint of research
Environmental Research: Infrastructure and Sustainability 2022, vol. 2, issue 3
doi: 10.1088/2634-4505/ac84a4