Publications
Camille C Mangin et al.
Magnetotactic bacteria affiliated with diverse Pseudomonadota families biomineralize intracellular Ca-carbonate
The ISME Journal 2025, vol. 19, issue 1
doi: 10.1093/ismejo/wrae260
Claire Ricono et al.
Effect of organic farming on root microbiota, seed production and pathogen resistance in winter wheat fields
PLANTS, PEOPLE, PLANET 2024
doi: 10.1002/ppp3.10602
Jean Mainguy et al.
metagWGS, a comprehensive workflow to analyze metagenomic data using Illumina or PacBio HiFi reads
2024
doi: 10.1101/2024.09.13.612854
Lucia Campese et al.
The NEREA Augmented Observatory: an integrative approach to marine coastal ecology
Scientific Data 2024, vol. 11, issue 1
doi: 10.1038/s41597-024-03787-y
Marinna Gaudin et al.
Ecological associations distribution modelling of marine plankton at a global scale
Philosophical Transactions of the Royal Society B: Biological Sciences 2024, vol. 379, issue 1909
doi: 10.1098/rstb.2023.0169
Françoise Irlinger et al.
A comprehensive, large-scale analysis of “terroir” cheese and milk microbiota reveals profiles strongly shaped by both geographical and human factors
ISME Communications 2024, vol. 4, issue 1
doi: 10.1093/ismeco/ycae095
William Timothy Treal Taylor et al.
High altitude horse use and early horse transport in eastern Eurasia: New evidence from melting ice
The Holocene 2024
doi: 10.1177/09596836241254484
Ping Han et al.
Unveiling unique microbial nitrogen cycling and nitrification driver in coastal Antarctica
Nature Communications 2024, vol. 15, issue 1
doi: 10.1038/s41467-024-47392-4
Christophe Djemiel et al.
Unraveling biogeographical patterns and environmental drivers of soil fungal diversity at the French national scale
SOIL 2024, vol. 10, issue 1
doi: 10.5194/soil-10-251-2024
Nils Giordano et al.
Genome-scale community modelling reveals conserved metabolic cross-feedings in epipelagic bacterioplankton communities
Nature Communications 2024, vol. 15, issue 1
doi: 10.1038/s41467-024-46374-w
Camille d’Humières et al.
Perturbation and resilience of the gut microbiome up to 3 months after β-lactams exposure in healthy volunteers suggest an important role of microbial β-lactamases
Microbiome 2024, vol. 12, issue 1
doi: 10.1186/s40168-023-01746-0
Angelina Beavogui et al.
The defensome of complex bacterial communities
Nature Communications 2024, vol. 15, issue 1
doi: 10.1038/s41467-024-46489-0
Cassandre Bedu-Ferrari et al.
In-depth characterization of a selection of gut commensal bacteria reveals their functional capacities to metabolize dietary carbohydrates with prebiotic potential
mSystems 2024, vol. 9, issue 4
doi: 10.1128/msystems.01401-23
Téo Lemane et al.
Indexing and real-time user-friendly queries in terabyte-sized complex genomic datasets with kmindex and ORA
Nature Computational Science 2024, vol. 4, issue 2
doi: 10.1038/s43588-024-00596-6
Olivier Harlé et al.
Deciphering the metabolism of Lactobacillus delbrueckii subsp. delbrueckii during soy juice fermentation using phenotypic and transcriptional analysis
Applied and Environmental Microbiology 2024
doi: 10.1128/aem.01936-23
Clemens Schauberger et al.
Metagenome-assembled genomes of deep-sea sediments: changes in microbial functional potential lag behind redox transitions
ISME Communications 2024, vol. 4, issue 1
doi: 10.1093/ismeco/ycad005
Blandine Trouche et al.
Distribution and genomic variation of ammonia-oxidizing archaea in abyssal and hadal surface sediments
ISME Communications 2023, vol. 3, issue 1
doi: 10.1038/s43705-023-00341-6
Rebecca J. Stevick et al.
Anti-diarrheal drug loperamide induces dysbiosis in zebrafish microbiota via bacterial inhibition
Microbiome 2023, vol. 11, issue 1
doi: 10.1186/s40168-023-01690-z
Emma Bergsten et al.
Parvimonas micra , an oral pathobiont associated with colorectal cancer, epigenetically reprograms human colonocytes
Gut Microbes 2023, vol. 15, issue 2
doi: 10.1080/19490976.2023.2265138
Yujiao Zhang et al.
Genetic inhibition of CARD9 accelerates the development of atherosclerosis in mice through CD36 dependent-defective autophagy
Nature Communications 2023, vol. 14, issue 1
doi: 10.1038/s41467-023-40216-x
Elena Buelow et al.
Hospital and urban wastewaters shape the matrix and active resistome of environmental biofilms
Water Research 2023, vol. 244
doi: 10.1016/j.watres.2023.120408
Alex J. Veglia et al.
Endogenous viral elements reveal associations between a non-retroviral RNA virus and symbiotic dinoflagellate genomes
Communications Biology 2023, vol. 6, issue 1
doi: 10.1038/s42003-023-04917-9
Serge Planes et al.
Insights and achievements from the Tara Pacific expedition
Nature Communications 2023, vol. 14, issue 1
doi: 10.1038/s41467-023-38896-6
Rajat Kumar et al.
Genome-centric polyhydroxyalkanoate reconciliation reveals nutrient enriched growth dependent biosynthesis in Bacillus cereus IBA1
Bioresource Technology 2023, vol. 382
doi: 10.1016/j.biortech.2023.129210
Ioulia Santi et al.
European marine omics biodiversity observation network: a strategic outline for the implementation of omics approaches in ocean observation
Frontiers in Marine Science 2023, vol. 10
doi: 10.3389/fmars.2023.1118120
Alejandro Manzano-Marín et al.
Co-obligate symbioses have repeatedly evolved across aphids, but partner identity and nutritional contributions vary across lineages
Peer Community Journal 2023, vol. 3
doi: 10.24072/pcjournal.278
Morgan Gaïa et al.
Mirusviruses link herpesviruses to giant viruses
Nature 2023, vol. 616, issue 7958
doi: 10.1038/s41586-023-05962-4
Bo-Hyung Lee et al.
Investigation of the Genus Flavobacterium as a Reservoir for Fish-Pathogenic Bacterial Species: the Case of Flavobacterium collinsii
Applied and Environmental Microbiology 2023, vol. 89, issue 4
doi: 10.1128/aem.02162-22
Sophie Mieszkin et al.
Scleromatobacter humisilvae gen. nov., sp. nov., a novel bacterium isolated from oak forest soil
International Journal of Systematic and Evolutionary Microbiology 2023, vol. 73, issue 3
doi: 10.1099/ijsem.0.005793
Hugo Doré et al.
Differential global distribution of marine picocyanobacteria gene clusters reveals distinct niche-related adaptive strategies
The ISME Journal 2023
doi: 10.1038/s41396-023-01386-0