Publications
Florence Busato et al.
Multiplex digital PCR for the simultaneous quantification of a miRNA panel
Analytica Chimica Acta 2024, vol. 1335
doi: 10.1016/j.aca.2024.343440
Florence Rufflé et al.
Effective requesting method to detect fusion transcripts in chronic myelomonocytic leukemia RNA-seq
NAR Genomics and Bioinformatics 2024, vol. 6, issue 3
doi: 10.1093/nargab/lqae117
Ahlam Chaqroun et al.
Definition of a concentration and RNA extraction protocol for optimal whole genome sequencing of SARS-CoV-2 in wastewater (ANRS0160)
Science of The Total Environment 2024, vol. 952
doi: 10.1016/j.scitotenv.2024.175823
Erwan Denis et al.
Validated DNA isolation method ensuring successful long-read sequencing of cattle semen genome
PLOS ONE 2024, vol. 19, issue 8
doi: 10.1371/journal.pone.0308011
David Derbala et al.
Whole-Genome Bisulfite Sequencing Protocol for the Analysis of Genome-Wide DNA Methylation and Hydroxymethylation Patterns at Single-Nucleotide Resolution
Methods in Molecular Biology 2024
doi: 10.1007/978-1-0716-4051-7_18
Amel Larnane et al.
An innovative approach for low input forensic DNA sample analysis using the GlobalFiler™ IQC PCR amplification Kit on the Magelia® platform
Forensic Science International: Genetics 2024, vol. 72
doi: 10.1016/j.fsigen.2024.103093
Y. Lammers et al.
Multiplexing PCR allows the identification of within‐species genetic diversity in ancient eDNA
Molecular Ecology Resources 2024, vol. 24, issue 3
doi: 10.1111/1755-0998.13926
Paul Bruand et al.
Size Fractionation of Milliliter DNA Samples in Minutes Controlled by an Electric Field of ∼10 V
Analytical Chemistry 2023, vol. 95, issue 49
doi: 10.1021/acs.analchem.3c03187
Jérôme Trotereau et al.
Construction and characterization of a saturated Tn-seq library of Salmonella Typhimurium ATCC 14028
Microbiology Resource Announcements 2023, vol. 12, issue 11
doi: 10.1128/mra.00365-23
Fabien Girka et al.
Tensor generalized canonical correlation analysis
Information Fusion 2023, vol. 102
doi: 10.1016/j.inffus.2023.102045
Ann M Mc Cartney et al.
The European Reference Genome Atlas: piloting a decentralised approach to equitable biodiversity genomics
2023
doi: 10.1101/2023.09.25.559365
Marin Truchi et al.
Detecting subtle transcriptomic perturbations induced by lncRNAs Knock-Down in single-cell CRISPRi screening using a new sparse supervised autoencoder neural network
2023
doi: 10.1101/2023.07.11.548494
Kamar Ghaibour et al.
An Efficient Protocol for CUT&RUN Analysis of FACS-Isolated Mouse Satellite Cells
Journal of Visualized Experiments 2023, issue 197
doi: 10.3791/65215
Jeanlin Jourdain et al.
Large-scale detection and characterization of interchromosomal rearrangements in normozoospermic bulls using massive genotype and phenotype data sets
Genome Research 2023, vol. 33, issue 6
doi: 10.1101/gr.277787.123
Isabelle Busseau et al.
Evaluation of microRNA variant maturation prior to genome edition
Biochimie 2023, vol. 217
doi: 10.1016/j.biochi.2023.06.007
Tim A Steiert et al.
A critical spotlight on the paradigms of FFPE-DNA sequencing
Nucleic Acids Research 2023, vol. 51, issue 14
doi: 10.1093/nar/gkad519
Louciné Mitoyan et al.
In Vivo Model for Isolating Epithelial Cells of the Anorectal Transition Zone
Methods in Molecular Biology 2023
doi: 10.1007/978-1-0716-3076-1_4
Fabien Lombard et al.
Open science resources from the Tara Pacific expedition across coral reef and surface ocean ecosystems
Scientific Data 2023, vol. 10, issue 1
doi: 10.1038/s41597-022-01757-w
Caroline Belser et al.
Integrative omics framework for characterization of coral reef ecosystems from the Tara Pacific expedition
Scientific Data 2023, vol. 10, issue 1
doi: 10.1038/s41597-023-02204-0
Erwin L. van Dijk et al.
Genomics in the long-read sequencing era
Trends in Genetics 2023, vol. 39, issue 9
doi: 10.1016/j.tig.2023.04.006
AL Soilly et al.
Cost of exome analysis in patients with intellectual disability: a micro-costing study in a French setting
BMC Health Services Research 2023, vol. 23, issue 1
doi: 10.1186/s12913-023-09373-z
Mildred Delaleau et al.
A scalable framework for the discovery of functional helicase substrates and helicase-driven regulatory switches
Proceedings of the National Academy of Sciences 2022, vol. 119, issue 38
doi: 10.1073/pnas.2209608119
Riccardo Gamba et al.
Enrichment of centromeric DNA from human cells
PLOS Genetics 2022, vol. 18, issue 7
doi: 10.1371/journal.pgen.1010306
Pierre Lopez et al.
Genomic characterization of Tenacibaculum maritimum O‐antigen gene cluster and development of a multiplex PCR‐based serotyping scheme
Transboundary and Emerging Diseases 2022
doi: 10.1111/tbed.14637
Célia Carbonne et al.
Metatranscriptomics of cheese microbial communities: Efficiency of RNA extraction from various cheese types and of mRNA enrichment
International Journal of Food Microbiology 2022, vol. 373
doi: 10.1016/j.ijfoodmicro.2022.109701
Jean-Marc Aury et al.
Long-read and chromosome-scale assembly of the hexaploid wheat genome achieves high resolution for research and breeding
GigaScience 2022, vol. 11
doi: 10.1093/gigascience/giac034
Aurélie Canaguier et al.
Oxford Nanopore and Bionano Genomics technologies evaluation for plant structural variation detection
BMC Genomics 2022, vol. 23, issue 1
doi: 10.1186/s12864-022-08499-4
Grégoire Siekaniec et al.
Identification of isolated or mixed strains from long reads: a challenge met on Streptococcus thermophilus using a MinION sequencer
Microbial Genomics 2021, vol. 7, issue 11
doi: 10.1099/mgen.0.000654
Frédéric Jehl et al.
RNA-Seq Data for Reliable SNP Detection and Genotype Calling: Interest for Coding Variant Characterization and Cis-Regulation Analysis by Allele-Specific Expression in Livestock Species
Frontiers in Genetics 2021, vol. 12
doi: 10.3389/fgene.2021.655707
Miriam I. Brandt et al.
Evaluating sediment and water sampling methods for the estimation of deep-sea biodiversity using environmental DNA
Scientific Reports 2021, vol. 11, issue 1
doi: 10.1038/s41598-021-86396-8