Publications 2018

Poquet i et al.
Clostridium difficile Biofilm: Remodeling Metabolism and Cell Surface to Build a Sparse and Heterogeneously Aggregated Architecture
Frontiers in Microbiology 2018 9
doi: 10.3389/fmicb.2018.02084

Poupel O et al.
SpdC, a novel virulence factor, controls histidine kinase activity in Staphylococcus aureus
PLOS Pathogens 2018 14(3)
doi: 10.1371/journal.ppat.1006917

Chaintreuil C et al.
Naturally occurring variations in the nod-independent model legume Aeschynomene evenia and relatives: a resource for nodulation genetics
BMC Plant Biology 2018 18(1)
doi: 10.1186/s12870-018-1260-2

Labiad Y et al.
A transcriptomic signature predicting septic outcome in patients undergoing autologous stem cell transplantation
Experimental Hematology 2018 65
doi: 10.1016/j.exphem.2018.06.001

Popova M et al.
Changes in the Rumen Microbiota of Cows in Response to Dietary Supplementation with Nitrate, Linseed, and Saponin Alone or in Combination
Applied and Environmental Microbiology 2018 85(4)
doi: 10.1128/AEM.02657-18

Darde TA et al.
The ReproGenomics Viewer: a multi-omics and cross-species resource compatible with single-cell studies for the reproductive science community
Bioinformatics 2019
doi: 10.1093/bioinformatics/btz047

Teyssier A et al.
Inside the guts of the city: Urban-induced alterations of the gut microbiota in a wild passerine
Science of The Total Environment 2018 612
doi: 10.1016/j.scitotenv.2017.09.035

Cabanettes F et al.
D-GENIES: dot plot large genomes in an interactive, efficient and simple way
PeerJ 2018 6
doi: 10.7717/peerj.4958

Gaulin E et al.
Genomics analysis of Aphanomyces spp. identifies a new class of oomycete effector associated with host adaptation
BMC Biology 2018 16(1)
doi: 10.1186/s12915-018-0508-5

Duron O et al.
Tick-Bacteria Mutualism Depends on B Vitamin Synthesis Pathways
Current Biology 2018 28(12)
doi: 10.1016/j.cub.2018.04.038

Dutreux F et al.
De novo assembly and annotation of three Leptosphaeria genomes using Oxford Nanopore MinION sequencing
Scientific Data 2018 5
doi: DOI:10.1038/sdata.2018.235

Opatovsky I et al.
Modeling trophic dependencies and exchanges among insects' bacterial symbionts in a host-simulated environment
BMC Genomics 2018 19(1)
doi: 10.1186/s12864-018-4786-7

Castagnola S et al.
New Insights Into the Role of Cav2 Protein Family in Calcium Flux Deregulation in Fmr1-KO Neurons
Frontiers in Molecular Neuroscience 2018 11
doi: 10.3389/fnmol.2018.00342

Furlan G et al.
The Ftx Noncoding Locus Controls X Chromosome Inactivation Independently of Its RNA Products
Mol Cell. 2018 70(3)
doi: 10.1016/j.molcel.2018.03.024

Watson S et al.
Transcriptomic definition of molecular subgroups of small round cell sarcomas
The Journal of Pathology 2018 245(1)
doi: 10.1002/path.5053

Bis JC et al.
Whole exome sequencing study identifies novel rare and common Alzheimer's-Associated variants involved in immune response and transcriptional regulation
Molecular Psychiatry 2018
doi: 10.1038/s41380-018-0112-7

Diop G et al.
Genetic variants of RNASE3 (ECP) and susceptibility to severe malaria in Senegalese population
Malaria Journal 2018 17(1)
doi: 10.1186/s12936-018-2205-9

Mauger F et al.
Enrichment of methylated molecules using enhanced-ice-co-amplification at lower denaturation temperature-PCR (E-ice-COLD-PCR) for the sensitive detection of disease-related hypermethylation.
Epigenomics 2018 10(5)
doi: 10.2217/epi-2017-0166

Wang-Renault SF et al.
Deregulation of microRNA expression in purified T and B lymphocytes from patients with primary Sjögren's syndrome
Annals of the Rheumatic Diseases 2017 77(1)
doi: 10.1136/annrheumdis-2017-211417

Maikova A et al.
Discovery of new type I toxin–antitoxin systems adjacent to CRISPR arrays in Clostridium difficile
Nucleic Acids Research 2018 46(9)
doi: 10.1093/nar/gky124

Ogiyama Y et al.
Polycomb-Dependent Chromatin Looping Contributes to Gene Silencing during Drosophila Development
Molecular Cell 2018 71(1
doi: 10.1016/j.molcel.2018.05.032

Kincaid-Smith J et al.
Parent-of-Origin-Dependent Gene Expression in Male and Female Schistosome Parasites
Genome Biology and Evolution 2018 10(3)
doi: 10.1093/gbe/evy037

Aigle A et al.
The nature of the electron acceptor (MnIV/NO3) triggers the differential expression of genes associated with stress and ammonium limitation responses in Shewanella algae C6G3
FEMS Microbiology Letters 2018 365(13)
doi: 10.1093/femsle/fny068

Proust L et al.
Complete Genome Sequence of the Industrial Fast-Acidifying Strain Streptococcus thermophilus N4L
Microbiology Resource Announcements 2018 7(8)
doi: 10.1128/MRA.01029-18

Guyomar C et al.
Multi-scale characterization of symbiont diversity in the pea aphid complex through metagenomic approaches
Microbiome 2018 6(1)
doi: 10.1186/s40168-018-0562-9

Keller J et al.
RNA sequencing and analysis of three Lupinus nodulomes provide new insights into specific host-symbiont relationships with compatible and incompatible Bradyrhizobium strains
Plant Science 2018 266
doi: 10.1016/j.plantsci.2017.10.015

Ashraf U et al.
Advances in Analyzing Virus-Induced Alterations of Host Cell Splicing
Trends in Microbiology 2019 27(3)
doi: 10.1016/j.tim.2018.11.004

Maroilley T et al.
Immunome differences between porcine ileal and jejunal Peyer's patches revealed by global transcriptome sequencing of gut-associated lymphoid tissues
Scientific Reports 2018 8(1)
doi: 10.1038/s41598-018-27019-7

Segura A et al.
Transcriptomic analysis reveals specific metabolic pathways of enterohemorrhagic Escherichia coli O157:H7 in bovine digestive contents
BMC Genomics 2018 19(1)
doi:  10.1186/s12864-018-5167-y

Duval C et al.
Phylogeny and salt-tolerance of freshwater Nostocales strains: Contribution to their systematics and evolution
Harmful Algae 2018 73
doi: 10.1016/j.hal.2018.01.008