Publications 2017

Tirera S. et al.
Unraveling the genetic diversity and phylogeny of Leishmania RNA virus 1 strains of infected Leishmania isolates circulating in French Guiana.
PLoS Negl Trop Dis. (2017) Jul.11(7):e0005764
doi: 10.1371/journal.pntd.0005764

Louveau B. et al.
Clinical value of early detection of circulating tumour DNA-BRAFV600mut in patients with metastatic melanoma treated with a BRAF inhibitor.
ESMO Open. (2017) Jun. 2(2):e000173.
doi: 10.1136/esmoopen-2017-000173

Haziza S. et al.
Fluorescent nanodiamond tracking reveals intraneuronal transport abnormalities induced by brain-disease-related genetic risk factors.
Nat Nanotechnol. (2017) May. 12(4):322-328.
doi: 10.1038/nnano.2016.260

Erill I. et al.
Comparative analysis of Ralstonia solanacearum methylomes.
Front Plant Sci. (2017) Apr. 8: 504.
doi: 10.3389/fpls.2017.00504

Portoso M. et al.
PRC2 is dispensable for HOTAIR-mediated transcriptional repression.
EMBO J. (2017) Apr. 36(8):981-994.
doi: 10.15252/embj.201695335

Bournaud C. et al.
Paraburkholderia piptadeniae sp. nov. and Paraburkholderia ribeironis sp. nov., two root-nodulating symbiotic species of Piptadenia gonoacantha in Brazil.
Int J Syst Evol Microbiol. (2017) 67(2):432-440.
doi: 10.1099/ijsem.0.001648

Paban V. et al.
Omics analysis of mouse brain models of human diseases.
Gene (2017) Feb. 600:90-100.
doi: 10.1016/j.gene.2016.11.022

Le Gras S. et al.
Altered enhancer transcription underlies Huntington's disease striatal transcriptional signature.
Sci Rep. (2017) Feb. 7:42875.
doi: 10.1038/srep42875

Vallenet D. et al.
MicroScope in 2017: an expanding and evolving integrated resource for community expertise of microbial genomes.
Nucleic Acids Res. (2017) Jan. 45(D1):D517-D528.
doi: 10.1093/nar/gkw1101

Bruel AL. et al.
Expanding the clinical spectrum of recessive truncating mutations of KLHL7 to a Bohring-Opitz-like phenotype.
J Med Genet. (2017) Dec. 54(12):830-835.
doi: 10.1136/jmedgenet-2017-104748

Tronik-Le Roux D. et al.
Novel landscape of HLA-G isoforms expressed in clear cell renal cell carcinoma patients.
Mol Oncol. (2017) Nov. 11(11):1561-1578.
doi: 10.1002/1878-0261

Ragheb R. et al.
Vorinostat and Mithramycin A in combination therapy as an interesting strategy for the treatment of Sézary T lymphoma: a transcriptomic approach.
Arch Dermatol Res. (2017) Oct. 309(8):611-623.
doi: 10.1007/s00403-017-1761-0

Schmidt MHW. et al.
De novo assembly of a new Solanum pennellii accession using nanopore sequencing.
Plant Cell (2017) Oct. 29(10):2336-2348.
doi: 10.1105/tpc.17.00521

Chaignaud P. et al.
Genomic and transcriptomic analysis of growth-supporting dehalogenation of chlorinated methanes in Methylobacterium.
Front Microbiol. (2017) Se. 8:1600.
doi: 10.3389/fmicb.2017.01600

Galia W. et al.
Strand-specific transcriptomes of Enterohemorrhagic Escherichia coli in response to interactions with ground beef microbiota: interactions between microorganisms in raw meat.
BMC Genomics (2017) Aug.18(1):574.
doi: 10.1186/s12864-017-3957-2

Perrin S. et al.
Aozan: an automated post-sequencing data-processing pipeline.
Bioinformatics (2017) Jul. 33(14):2212-2213.
doi: 10.1093/bioinformatics/btx154

Bringel F. et al.
Genome sequence of the dichloromethane-degrading Bacterium Hyphomicrobium sp. strain GJ21.
Genome Announc. (2017) Jul. 5(30). pii: e00622-17.
doi: 10.1128/genomeA.00622-17

Mauger F. et al.
COLD-PCR technologies in the area of personalized medicine: Methodology and Applications.
Mol Diagn Ther. (2017) Jun. 21(3):269-283.
doi: 10.1007/s40291-016-0254-8

Boyer F. et al.
CSReport: A new computational tool designed for automatic analysis of class switch recombination junctions sequenced by high-throughput sequencing..
J Immunol. (2017) May.198(10):4148-4155.
doi: 10.4049/jimmunol.1601924

Mensous M. et al.
Diversity and evolution of plastomes in Saharan mimosoids:potential use for phylogenetic and population genetic studies.
Tree Genetics Genomes (2017) Apr . 13:48.
doi: 10.1007/s11295-017-1131-2

Zangari J. et al.
Rapid decay of engulfed extracellular miRNA by XRN1 exonuclease promotes transient epithelial-mesenchymal transition.
Nucleic Acids Res. (2017) Apr. 45(7):4131-4141.
doi: 10.1093/nar/gkw1284

Pratlong M. et al.
Evidence for a genetic sex determination in Cnidaria, the Mediterranean red coral (Corallium rubrum).
R. Soc. Open Sci. (2017) Mar. 4(3):160880.
doi: 10.1098/rsos.160880

Bougneres P. et al.
Using spatio-temporal surveillance data to test the infectious environment of children before type 1 diabetes diagnosis.
PLoS One (2017) Feb 2. 12(2):e0170658.
doi: 10.1371/journal.pone.0170658

Mazzitelli J-Y. et al.
De novo transcriptome sequencing and analysis of freshwater snail (Radix balthica) to discover genes and pathways affected by exposure to oxazepam.
Ecotoxicology (2017) Jan. 26: 127–140.
doi: 10.1007/s10646-016-1748-1

Bonan S. et al.
Membrane-bound ICAM-1 contributes to the onset of proinvasive tumor stroma by controlling acto-myosin contractility in carcinoma-associated fibroblasts.
Oncotarget. (2017) Jan. 8(1):1304-1320.
doi: 10.18632/oncotarget.13610

Flachsbart F. et al.
Identification and characterization of two functional variants in the human longevity gene FOXO3.
Nat Commun. 2017 Dec. 8(1):2063.
doi: 10.1038/s41467-017-02183-y

Chauvin C. et al.
High-throughput drug screening identifies Pazopanib and Clofilium Tosylate as promising treatments for Malignant Rhabdoid Tumors.
Cell Rep. (2017) Nov. 21(7):1737-1745.
doi: 10.1016/j.celrep.2017.10.076

Capela D. et al.
Recruitment of a lineage-specific virulence regulatorypathway promotes intracellular infection by a plant pathogen experimentally evolved into a legume symbiont.
Mol Biol Evol. (2017) Oct. 34(10):2503-2521.
doi: 10.1093/molbev/msx165

Terrat S. et al.
Mapping and predictive variations of soil bacterial richness across France.
PLoS One (2017) Oct. 12(10):e0186766.
doi: 10.1371/journal.pone.0186766

Rochat T. et al.
Genomic characterization of Flavobacterium psychrophilum serotypes and development of a multiplex PCR-based serotyping scheme.
Front in Microbiol.(2017) Sep. 8:1752.
doi: 10.3389/fmicb.2017.01752