Publications Sélection 2017

Costea PI. et al.
Towards standards for human fecal sample processing in metagenomic studies.
Nat Biotechnol. (2017) Nov. 35(11):1069-1076.
doi: 10.1038/nbt.3960

Le Gras S. et al.
Altered enhancer transcription underlies Huntington's disease striatal transcriptional signature.
Sci Rep. (2017) Feb. 7:42875.
doi: 10.1038/srep42875

Ficko-Blean E. et al.
Carrageenan catabolism is encoded by a complex regulon in marine heterotrophic bacteria.
Nat Commun. (2017) Nov. 8(1):1685.
doi: 10.1038/s41467-017-01832-6

Greenberg MV. et al.
Transient transcription in the early embryo sets an epigenetic state that programs postnatal growth.
Nat Genet. (2017) Jan. 49(1):110-118.
doi: 10.1038/ng.3718

Schmidt MHW. et al.
De novo assembly of a new Solanum pennellii accession using nanopore sequencing.
Plant Cell (2017) Oct. 29(10):2336-2348.
doi: 10.1105/tpc.17.00521

Vallenet D. et al.
MicroScope in 2017: an expanding and evolving integrated resource for community expertise of microbial genomes.
Nucleic Acids Res. (2017) Jan. 45(D1):D517-D528.
doi: 10.1093/nar/gkw1101

Cohen-Boulakia S. et al.
Scientific workflows for computational reproducibility in the life sciences: Status, challenges and opportunities.
Future Generation Computer Systems (2017) Oct. 75:284-298.
doi: 10.1016/j.future.2017.01.012

Sims R. et al.
Rare coding variants in PLCG2, ABI3, and TREM2 implicate microglial-mediated innate immunity in Alzheimer's disease.
Nat. Genetics (2017) Sept. 49(9):1373-1384.
doi: 10.1038/ng.3916

Boeva V. et al.
Heterogeneity of neuroblastoma cell identity defined by transcriptional circuitries.
Nature Genetics (2017) Sep. 49(9):1408-1413.
doi: 10.1038/ng.3921

Bonnet A. et al.
Quaking RNA-binding proteins control early myofibril formation by modulating Tropomyosin.
Dev Cell. (2017) Sep. 42(5):527-541.e4.
doi: 10.1016/j.devcel.2017.08.004

Morchikh M. et al.
HEXIM1 and NEAT1 long non-coding RNA form a multi-subunit complex that regulates DNA-mediated innate immune response.
Mol Cell. (2017) Aug. 67(3):387-399.e5.
doi: 10.1016/j.molcel.2017.06.020

Perrin S. et al.
Aozan: an automated post-sequencing data-processing pipeline.
Bioinformatics (2017) Jul. 33(14):2212-2213.
doi: 10.1093/bioinformatics/btx154

Dao LTM. et al.
Genome-wide characterization of mammalian promoters with distal enhancer functions.
Nature Genetics. (2017) Jul. 49(7):1073-1081.
doi: 10.1038/ng.3884

Badouin H. et al.
The sunflower genome provides insights into oil metabolism, flowering and Asterid evolution.
Nature (2017) Jun. 546:148–152.
doi: 10.1038/nature22380

Kassambara A. et al.
Global miRNA expression analysis identifies novel key regulators of plasma cell differentiation and malignant plasma cell.
Nucleic Acids Res. (2017) Jun. 45(10):5639-5652.
doi: 10.1093/nar/gkx327

Fabre E. et al.
Noumeavirus replication relies on a transient remote control of the host nucleus.
Nat Commun. (2017) Apr. 8:15087.
doi: 10.1038/ncomms15087

Faucon F. et al.
In the hunt for genomic markers of metabolic resistance to pyrethroids in the mosquito Aedes aegypti: An integrated next-generation sequencing approach.
PLoS Negl. Trop. Dis. (2017) Apr. 11(4):e0005526.
doi: 10.1371/journal.pntd.0005526

Machiela MJ. et al.
Genetic variants related to longer telomere length are associated with increased risk of Renal Cell Carcinoma.
Europ. Urol. (2017) Nov. 72 (5): 747-754
doi: 10.1016/j.eururo.2017.07.015

Arguel M.J. et al.
A cost effective 5?selective single cell transcriptome profiling approach with improved UMI design.
Nucleic Acids Res. (2017) Apr. 45(7):e48.
doi: 10.1093/nar/gkw1242

Domman D. et al.
Integrated view of Vibrio cholerae in the Americas.
Science (2017) Nov. 358(6364):789-793.
doi: 10.1126/science.aao2136

Zangari J. et al.
Rapid decay of engulfed extracellular miRNA by XRN1 exonuclease promotes transient epithelial-mesenchymal transition.
Nucleic Acids Res. (2017) Apr. 45(7):4131-4141.
doi: 10.1093/nar/gkw1284