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Sequencing Platform of Toulouse

High-throughput sequencing: Genomic sequencing and resequencing, transcriptome analysis. Chip analysis performed by other GeT (Genome and Transcriptome) sites that make up the GenoToul genomic platforms and core facilities.

Equipment:
Sequencing equipment: 
1 PACBIO RSII, 1 HISEQ3000, 1 Hiseq2500 1T, 1 Hiseq2500, 2 Miseq, 1 ABI 3730
Préparation des libraires:
Automatisation de l’ensemble des protocoles pour la technologie Illumina sur 5 Genesis Tecan
Other equipment:
1 Biomark (Fluidigm) C1 single cell auto prep system , 1 BeadXPress, scanners Innoscan, Agilent and Roche

Main achievements:

785 projects executed since 2007, including sequencing projects, high-throughput sequencing, high-throughput qPCR and medium-throughput genotyping projects.
62 TB of sequence data produced since 2008 (454/MiSeq/HiSeq).

Bioinformatics analysis:
The genomics platform of Toulouse offers the following services:
Primary analysis:
- Delivery of raw sequence data and quality scores (accessible via ng6, for 2 years minimum in a backup space)
- Sequencing and quality control report
- Identification of contamination
- Alignment of reads against a reference sequence.

Quality Assurance/ Certification:
IBiSA platform, certified as a strategic platform by INRA. ISO 9001 certified since 2008.

For further information: http://get.genotoul.fr/

Platform Managers:
Denis Milan / Cécile Donnadieu

Plateforme Génomique (GeT-PlaGe)
UMR INRA-INP Génétique Cellulaire, centre INRA de Toulouse Auzeville
Chemin de Borderouge, Auzeville, 31326 Castanet-Tolosan

Contacts:
Denis Milan / Cécile Donnadieu
get-plage@genotoul.fr
+33 5 61 28 55 88


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