Publications 2016

Le Guennec K. et al.
17q21.31 duplication causes prominent tau-related dementia with increased MAPT expression
Mol Psychiatry. (2016) Dec 13
doi: 10.1038/mp.2016.226

Boussaha M. et al.
Construction of a large collection of small genome variations in French dairy and beef breeds using whole-genome sequences
Genetics Selection Evolution. (2016) 48:87
doi: 10.1186/s12711-016-0268-z

Demais V. et al.
Reversal of Pathologic Lipid Accumulation in NPC1-Deficient Neurons by Drug-Promoted Release of LAMP1-Coated Lamellar Inclusions
J Neurosci. (2016) 36: 8012-25
doi: 10.1523/JNEUROSCI.0900-16.2016

Lescot, M. et al.
Reverse transcriptase genes are highly abundant and transcriptionally active in marine plankton assemblages
Isme Journal. (2016) 10(5): p. 1134-1146
doi:

Leitwein M. et al.
Genome-wide nucleotide diversity of hatchery-reared Atlantic and Mediterranean strains of brown trout Salmo trutta compared to wild Mediterranean populations
J Fish Biol. (2016) 89:2717-2734
doi:

Sapriel G. et al.
Genome-wide mosaicism within Mycobacterium abscessus: evolutionary and epidemiological implications
BMC Genomics. (2016) 17:118
doi: 10.1186/s12864-016-2448-1

Zhang SD. et al.
Genomic and physiological analysis reveals versatile metabolic capacity of deep-sea Photobacterium phosphoreum ANT-2200.
Extremophiles. (2016) 20(3):301-10
doi: 10.1007/s00792-016-0822-1

Tenaillon O. et al.
Tempo and mode of genome evolution in a 50,000-generation experiment
Nature. (2016) 536(7615):165-70
doi:

Marchetti M. et al.
Experimental evolution of rhizobia may lead to either extra- or intracellular symbiotic adaptation depending on the selection regime
Mol Ecol. (2016) Oct 22
doi: 10.1111/mec.13895

Troupin C. et al.
Large-Scale Phylogenomic Analysis Reveals the Complex Evolutionary History of Rabies Virus in Multiple Carnivore Hosts
PLoS Pathog. (2016) 12(12):e1006041
doi: 10.1371/journal.ppat.1006041

Letaief R. et al.
Identification and characterization of copy number variations in cattle
Journal of Animal Science. (2016) 183-183
doi: 10.2527/jas.94 supplement4183a

Tabet R. et al.
Fragile X Mental Retardation Protein (FMRP) controls diacylglycerol kinase activity in neurons
Proc Natl Acad Sci USA. (2016) 113(26):E3619-28
doi: 10.1073/pnas.1522631113

Madoui, M.A. et al.
MaGuS: a tool for quality assessment and scaffolding of genome assemblies with Whole Genome Profiling (TM) Data
BMC Bioinformatics. (2016) 17: p. 115
doi:

Aburjaile FF. et al.
Adaptation of Propionibacterium freudenreichii to long-term survival under gradual nutritional shortage
BMC Genomics. (2016) 17:1007
doi:

Laureau R. et al.
Extensive Recombination of a Yeast Diploid Hybrid through Meiotic Reversion
PLoS Genetics. (2016) 12(2):e1005781
doi: 10.1371/journal.pgen.1005781

Lebrigand K. et al.
Comparative Genomic Analysis of Drechmeria coniospora Reveals Core and Specific Genetic Requirements for Fungal Endoparasitism of Nematodes
PLoS Genet. (2016) 12(5):e1006017
doi: 10.1371/journal.pgen.1006017

Dupont C. et al.
A new piperidinol derivative targeting mycolic acid transport in Mycobacterium abscessus
Mol Microbiol. (2016) 101(3):515-29
doi: 10.1111/mmi.13406

Le Gac M. et al.
Evolutionary processes and cellular functions underlying divergence in Alexandrium minutum
Mol Ecol. (2016) 25(20):5129-5143
doi: 10.1111/mec.13815

Roux PF. et al.
The Extent of mRNA Editing Is Limited in Chicken Liver and Adipose, but Impacted by Tissular Context, Genotype, Age, and Feeding as Exemplified with a Conserved Edited Site in COG3
G3 (Genes,Genomes,Genetics). (2015) 6(2):321-35
doi: 10.1534/g3.115.022251

Niewiadomska-Cimicka A. et al.
Genome-wide Analysis of RARbeta Transcriptional Targets in Mouse Striatum Links Retinoic Acid Signaling with Huntington's Disease and Other Neurodegenerative Disorders
Mol Neurobiol. (2016) [Epub ahead of print] PubMed PMID: 27405468
doi:

Holmes, A. et al.
Mechanistic signatures of HPV insertions in cervical carcinomas
Npj Genomic Medicine. (2016) 16004
doi: 10.1038/npjgenmed.2016.4

Martin, G. et al.
Improvement of the banana "Musa acuminata" reference sequence using NGS data and semi-automated bioinformatics methods
BMC Genomics. (2016) 17: p. 243
doi:

Doublet V. et al.
Brain transcriptomes of honey bees (Apis mellifera) experimentally infected by two pathogens: Black queen cell virus and Nosema ceranae
Genom Data. (2016) 10:79-82
doi:

Guillem Rigaill et al.
Synthetic data sets for the identification of key ingredients for RNA-seq differential analysis
Briefings in Bioinformatics 2016
doi: 10.1093/bib/bbw092