Publications 2018

Murat C et al.
Pezizomycetes genomes reveal the molecular basis of ectomycorrhizal truffle lifestyle
Nature Ecology & Evolution 2018 2(12)
doi: 10.1038/s41559-018-0710-4

Pruneau L et al.
Comparative Transcriptome Profiling of Virulent and Attenuated Ehrlichia ruminantium Strains Highlighted Strong Regulation of map1- and Metabolism Related Genes
Frontiers in Cellular and Infection Microbiology 2018 8
doi: 10.3389/fcimb.2018.00153

El-Daher MT et al.
Tetratricopeptide repeat domain 7A is a nuclear factor that modulates transcription and chromatin structure
Cell Discovery 2018 4(1)
doi: 10.1038/s41421-018-0061-y

Tang-Huau TL et al.
Human in vivo-generated monocyte-derived dendritic cells and macrophages cross-present antigens through a vacuolar pathway
Nature Communications 2018 9(1)
doi: 10.1038/s41467-018-04985-0

Ben Hafsa A et al.
Status of potato viruses in Tunisia and molecular characterization of Tunisian Potato Virus X (PVX isolates)
European Journal of Plant Pathology 2017 151(3)
doi: 10.1007/s10658-017-1407-2

Deveau P et al.
QuantumClone: clonal assessment of functional mutations in cancer based on a genotype-aware method for clonal reconstruction
Bioinformatics 2018 34(11)
doi: 10.1093/bioinformatics/bty016

Mary L et al.
Disease-causing variants in TCF4 are a frequent cause of intellectual disability: lessons from large-scale sequencing approaches in diagnosis
European Journal of Human Genetics 2018 26(7)
doi: 10.1038/s41431-018-0096-4

Vulin A et al.
Severe PATCHED1 Deficiency in Cancer-Prone Gorlin Patient Cells Results in Intrinsic Radiosensitivity
International Journal of Radiation Oncology*Biology*Physics 2018 102(2)
doi: 10.1016/j.ijrobp.2018.05.057

Poquet i et al.
Clostridium difficile Biofilm: Remodeling Metabolism and Cell Surface to Build a Sparse and Heterogeneously Aggregated Architecture
Frontiers in Microbiology 2018 9
doi: 10.3389/fmicb.2018.02084

Poupel O et al.
SpdC, a novel virulence factor, controls histidine kinase activity in Staphylococcus aureus
PLOS Pathogens 2018 14(3)
doi: 10.1371/journal.ppat.1006917

Chaintreuil C et al.
Naturally occurring variations in the nod-independent model legume Aeschynomene evenia and relatives: a resource for nodulation genetics
BMC Plant Biology 2018 18(1)
doi: 10.1186/s12870-018-1260-2

Labiad Y et al.
A transcriptomic signature predicting septic outcome in patients undergoing autologous stem cell transplantation
Experimental Hematology 2018 65
doi: 10.1016/j.exphem.2018.06.001

Popova M et al.
Changes in the Rumen Microbiota of Cows in Response to Dietary Supplementation with Nitrate, Linseed, and Saponin Alone or in Combination
Applied and Environmental Microbiology 2018 85(4)
doi: 10.1128/AEM.02657-18

Darde TA et al.
The ReproGenomics Viewer: a multi-omics and cross-species resource compatible with single-cell studies for the reproductive science community
Bioinformatics 2019
doi: 10.1093/bioinformatics/btz047

Teyssier A et al.
Inside the guts of the city: Urban-induced alterations of the gut microbiota in a wild passerine
Science of The Total Environment 2018 612
doi: 10.1016/j.scitotenv.2017.09.035

Cabanettes F et al.
D-GENIES: dot plot large genomes in an interactive, efficient and simple way
PeerJ 2018 6
doi: 10.7717/peerj.4958

Gaulin E et al.
Genomics analysis of Aphanomyces spp. identifies a new class of oomycete effector associated with host adaptation
BMC Biology 2018 16(1)
doi: 10.1186/s12915-018-0508-5

Duron O et al.
Tick-Bacteria Mutualism Depends on B Vitamin Synthesis Pathways
Current Biology 2018 28(12)
doi: 10.1016/j.cub.2018.04.038

Dutreux F et al.
De novo assembly and annotation of three Leptosphaeria genomes using Oxford Nanopore MinION sequencing
Scientific Data 2018 5
doi: DOI:10.1038/sdata.2018.235

Opatovsky I et al.
Modeling trophic dependencies and exchanges among insects' bacterial symbionts in a host-simulated environment
BMC Genomics 2018 19(1)
doi: 10.1186/s12864-018-4786-7

Castagnola S et al.
New Insights Into the Role of Cav2 Protein Family in Calcium Flux Deregulation in Fmr1-KO Neurons
Frontiers in Molecular Neuroscience 2018 11
doi: 10.3389/fnmol.2018.00342

Furlan G et al.
The Ftx Noncoding Locus Controls X Chromosome Inactivation Independently of Its RNA Products
Mol Cell. 2018 70(3)
doi: 10.1016/j.molcel.2018.03.024

Watson S et al.
Transcriptomic definition of molecular subgroups of small round cell sarcomas
The Journal of Pathology 2018 245(1)
doi: 10.1002/path.5053

Bis JC et al.
Whole exome sequencing study identifies novel rare and common Alzheimer's-Associated variants involved in immune response and transcriptional regulation
Molecular Psychiatry 2018
doi: 10.1038/s41380-018-0112-7

Diop G et al.
Genetic variants of RNASE3 (ECP) and susceptibility to severe malaria in Senegalese population
Malaria Journal 2018 17(1)
doi: 10.1186/s12936-018-2205-9

Mauger F et al.
Enrichment of methylated molecules using enhanced-ice-co-amplification at lower denaturation temperature-PCR (E-ice-COLD-PCR) for the sensitive detection of disease-related hypermethylation.
Epigenomics 2018 10(5)
doi: 10.2217/epi-2017-0166

Wang-Renault SF et al.
Deregulation of microRNA expression in purified T and B lymphocytes from patients with primary Sjögren's syndrome
Annals of the Rheumatic Diseases 2017 77(1)
doi: 10.1136/annrheumdis-2017-211417

Maikova A et al.
Discovery of new type I toxin–antitoxin systems adjacent to CRISPR arrays in Clostridium difficile
Nucleic Acids Research 2018 46(9)
doi: 10.1093/nar/gky124

Ogiyama Y et al.
Polycomb-Dependent Chromatin Looping Contributes to Gene Silencing during Drosophila Development
Molecular Cell 2018 71(1
doi: 10.1016/j.molcel.2018.05.032

Kincaid-Smith J et al.
Parent-of-Origin-Dependent Gene Expression in Male and Female Schistosome Parasites
Genome Biology and Evolution 2018 10(3)
doi: 10.1093/gbe/evy037