Publications 2015

Tourneau, C.L et al.
Molecularly targeted therapy based on tumour molecular profiling versus conventional therapy for advanced cancer (SHIVA): a multicentre, open-label, proof-of-concept, randomised, controlled phase 2 trial
Lancet Oncol.
doi: 10.1016/S1470-2045(15)00188-6

Chevignon G. et al.
Transcriptomic response of Manduca sexta immune tissues to parasitization by the bracovirus associated wasp Cotesia congregata
Insect Biochemistry and Molecular Biology. 2015, 62:86-99

Hespeels B. et al.
Against All Odds : Trehalose-6-Phosphate Synthase and Trehalase Genes in the Bdelloid Rotifer Adineta vaga Were Acquired by Horizontal Gene Transfer and Are Upregulated during Desiccation
PLoS One. 2015, 10(7) :e0131313

Pingault L. et al.
Deep transcriptome sequencing provides new insights into the structural and functional organization of the wheat genome
Genome Biology 2015, 16:29

Bai Q et al.
Temporal analysis of genome alterations induced by single-cell passaging in human embryonic stem cells
Stem Cells Dev. 2015 24:653-62

Madic J. et al.
Circulating tumor DNA and circulating tumor cells in metastatic triple negative breast cancer patients
Int. J. Cancer. 2015

Mazuet C. et al.
Draft Genome Sequence of Clostridium botulinum Strain 277-00 Type B2
Genome Announc.2015 Apr 2;3(2). pii: e00211-15

Bork P. et al.
Tara Oceans studies plankton at PLANETARY SCALE
Science.2015 348(6237):873-873.
doi: 10.1126/science.aac5605

Eleveld, T.F. et al.
Relapsed neuroblastomas show frequent RAS-MAPK pathway mutations
Nature Genetics.
doi: 10.1038/ng.3333

Ravens S. et al.
Tip60 complex binds to active Pol II promoters and a subset of enhancers and co-regulates the c-Myc network in mouse embryonic stem cells
Epigenetics Chromatin. 2015 Nov 6;8:45.
doi: 10.1186/s13072-015-0039-z

Clerissi C. et al.
Deep sequencing of amplified Prasinovirus and host green algal genes from an Indian Ocean transect reveals interacting trophic dependencies and new genotypes
Environmental Microbiology Reports. 2015, 7(6):979-989

Jacquet F. et al.
Phylogeography and evolutionary history of the Crocidura olivieri complex (Mammalia, Soricomorpha) : from a forest origin to broad ecological expansion across Africa
Bmc Evolutionary Biology. 2015, 15:71

Plomion C. et al.
Decoding the oak genome : public release of sequence data, assembly, annotation and publication strategies
Molecular Ecology Resources 2015

Delaby Cet al.
Central Nervous System and Peripheral Inflammatory Processes in Alzheimer's Disease: Biomarker Profiling Approach
Front Neurol. 2015 6:181

Grünewald, T.G.P. et al.
Chimeric EWSR1-FLI1 regulates the Ewing sarcoma susceptibility gene EGR2 via a GGAA microsatellite
Nature Genetics. 2015

Ghassemi S. et al.
The ß-importin KAP8 (Pse1/Kap121) is required for nuclear import of the cellulase transcriptional regulator XYR1, asexual sporulation and stress resistance in Trichoderma reesei
Mol Microbiol. 2015 Apr;96(2):405-18

Murienne J. et al.
PCR-free shotgun sequencing of the stone loach mitochondrial genome (Barbatula barbatula)
Mitochondrial DNA. 2015 May 22:1-2

Brahimi-Horn MC. et al.
Knockout of Vdac1activates hypoxia-inducible factor through reactive oxygen species generation andinduces tumor growth by promoting metabolic reprogramming and inflammation
Cancer Metab. 2015 Aug 26;3:8

Oravecz A. et al.
Ikaros mediates gene silencing in T cells through Polycomb repressive complex 2
Nat Commun. 2015 Nov 9;6:8823

Czernic P. et al.
Convergent Evolution of Endosymbiont Differentiation in Dalbergioid and Inverted Repeat-Lacking Clade Legumes Mediated by Nodule-Specific Cysteine-Rich Peptides
Plant physiology. 2015, 169(2):1254-1265

Kopylova E. et al.
Deciphering metatranscriptomic data
Methods in molecular biology. (Clifton, NJ), 2015, 1269:279-291

Rollat-Farnier PA. et al.
Two Host Clades, Two Bacterial Arsenals : Evolution through Gene Losses in Facultative Endosymbionts
Genome Biology and Evolution. 2015, 7(3):839-855

Ozmadenci D. et al.
Netrin-1 regulates somatic cell reprogramming and pluripotency maintenance
Nat Commun. 2015 6:7398

Bellini A. et al.
Deep sequencing reveals occurrence of sub-clonal ALK mutations in neuroblastoma at diagnosis
Clin. Cancer Res. 2015

Madoui MA. et al.
Genome assembly using Nanopore-guided long and error-free DNA reads
Bmc Genomics,. 2015, 16:327.
doi: 10.1186/s12864-015-1519-z

Seubert B. et al.
Tetraspanin CD63 acts as a pro-metastaticfactor via ?-catenin stabilization
Int J Cancer. 2015 May 15;136(10):2304-15
doi: 10.1002/ijc.29296

Boussaha M. et al.
Genome-Wide Study of Structural Variants in Bovine Holstein, Montbéliarde and Normande Dairy Breeds
PLoS One.. 2015 Aug 28;10(8):e0135931

Lluch J. et al.
The Characterization of Novel Tissue Microbiota Using an Optimized 16S Metagenomic Sequencing Pipeline
PLoS One. 2015 Nov 6;10(11):e0142334

Depaquit J. et al.
Mitochondrial DNA Intraspecific Variability in Sergentomyia minuta (Diptera : Psychodidae)
Journal of Medical Entomology. 2015, 52(5):819-828

Le Bescot N. et al.
Global patterns of pelagic dinoflagellate diversity across protist size classes unveiled by metabarcoding
Environmental Microbiology. 2015