Publications 2023

Christophe Papin et al.
MBD4 loss results in global reactivation of promoters and retroelements with low methylated CpG density
Journal of Experimental & Clinical Cancer Research 2023, vol. 42, issue 1
doi: 10.1186/s13046-023-02882-z

Anvita Bhargava et al.
Transcriptomic analysis of sorted lung cells revealed a proviral activity of the NF-κB pathway toward SARS-CoV-2
iScience 2023, vol. 26, issue 12
doi: 10.1016/j.isci.2023.108449

Pietro Berico et al.
Super-enhancer-driven expression of BAHCC1 promotes melanoma cell proliferation and genome stability
Cell Reports 2023, vol. 42, issue 11
doi: 10.1016/j.celrep.2023.113363

Thomas Husson et al.
Episignatures in practice: independent evaluation of published episignatures for the molecular diagnostics of ten neurodevelopmental disorders
European Journal of Human Genetics 2023
doi: 10.1038/s41431-023-01474-x

María-Jesús Lobón-Iglesias et al.
Imaging and multi-omics datasets converge to define different neural progenitor origins for ATRT-SHH subgroups
Nature Communications 2023, vol. 14, issue 1
doi: 10.1038/s41467-023-42371-7

Fabien Pierron et al.
Sex-specific DNA methylation and transcription of zbtb38 and effects of gene–environment interactions on its natural antisense transcript in zebrafish
Epigenetics 2023, vol. 18, issue 1
doi: 10.1080/15592294.2023.2260963

David Gentien et al.
Multi-omics comparison of malignant and normal uveal melanocytes reveals molecular features of uveal melanoma
Cell Reports 2023, vol. 42, issue 9
doi: 10.1016/j.celrep.2023.113132

Gonçalo Pereira et al.
Characterization of circulating microRNA profiles of postpartum dairy cows with persistent subclinical endometritis
Journal of Dairy Science 2023, vol. 106, issue 12
doi: 10.3168/jds.2023-23616

Kamar Ghaibour et al.
An Efficient Protocol for CUT&RUN Analysis of FACS-Isolated Mouse Satellite Cells
Journal of Visualized Experiments 2023, issue 197
doi: 10.3791/65215

Cyril Esnault et al.
G4access identifies G-quadruplexes and their associations with open chromatin and imprinting control regions
Nature Genetics 2023
doi: 10.1038/s41588-023-01437-4

Frédérik Oger et al.
Pharmacological HDAC inhibition impairs pancreatic β-cell function through an epigenome-wide reprogramming
iScience 2023, vol. 26, issue 7
doi: 10.1016/j.isci.2023.107231

Mathias Boulanger et al.
DeSUMOylation of chromatin-bound proteins limits the rapid transcriptional reprogramming induced by daunorubicin in acute myeloid leukemias
Nucleic Acids Research 2023, vol. 51, issue 16
doi: 10.1093/nar/gkad581

Carlo Yague-Sanz et al.
Chromatin remodeling by Pol II primes efficient Pol III transcription
Nature Communications 2023, vol. 14, issue 1
doi: 10.1038/s41467-023-39387-4

Alex Clavería-Cabello et al.
Identification and experimental validation of druggable epigenetic targets in hepatoblastoma
Journal of Hepatology 2023, vol. 79, issue 4
doi: 10.1016/j.jhep.2023.05.031

Frédérik Oger et al.
β-Cell–Specific E2f1 Deficiency Impairs Glucose Homeostasis, β-Cell Identity, and Insulin Secretion
Diabetes 2023, vol. 72, issue 8
doi: 10.2337/db22-0604

Kamar Ghaibour et al.
Androgen receptor coordinates muscle metabolic and contractile functions
Journal of Cachexia, Sarcopenia and Muscle 2023
doi: 10.1002/jcsm.13251

Quentin Lamy-Besnier et al.
Chromosome folding and prophage activation reveal specific genomic architecture for intestinal bacteria
Microbiome 2023, vol. 11, issue 1
doi: 10.1186/s40168-023-01541-x

Fabien Pierron et al.
Transgenerational endocrine disruptor effects of cadmium in zebrafish and contribution of standing epigenetic variation to adaptation
Journal of Hazardous Materials 2023, vol. 455
doi: 10.1016/j.jhazmat.2023.131579

Cécile Thirant et al.
Reversible transitions between noradrenergic and mesenchymal tumor identities define cell plasticity in neuroblastoma
Nature Communications 2023, vol. 14, issue 1
doi: 10.1038/s41467-023-38239-5

Amélie Cavard et al.
The MIR34B/C genomic region contains multiple potential regulators of multiciliogenesis
FEBS Letters 2023, vol. 597, issue 12
doi: 10.1002/1873-3468.14630

Jack-Christophe Cossec et al.
Transient suppression of SUMOylation in embryonic stem cells generates embryo-like structures
Cell Reports 2023, vol. 42, issue 4
doi: 10.1016/j.celrep.2023.112380

Lise Mangiante et al.
Multiomic analysis of malignant pleural mesothelioma identifies molecular axes and specialized tumor profiles driving intertumor heterogeneity
Nature Genetics 2023
doi: 10.1038/s41588-023-01321-1

Dmitrii Y. Travin et al.
Dual-Uptake Mode of the Antibiotic Phazolicin Prevents Resistance Acquisition by Gram-Negative Bacteria
mBio 2023
doi: 10.1128/mbio.00217-23

Hala Al Adhami et al.
Systematic identification of factors involved in the silencing of germline genes in mouse embryonic stem cells
Nucleic Acids Research 2023
doi: 10.1093/nar/gkad071

Xuexue Liu et al.
DNA methylation-based profiling of horse archaeological remains for age-at-death and castration
iScience 2023, vol. 26, issue 3
doi: 10.1016/j.isci.2023.106144

Marianne Burbage et al.
Epigenetically controlled tumor antigens derived from splice junctions between exons and transposable elements
Science Immunology 2023, vol. 8, issue 80
doi: 10.1126/sciimmunol.abm6360

Mira Brazane et al.
The ribose methylation enzyme FTSJ1 has a conserved role in neuron morphology and learning performance
Life Science Alliance 2023, vol. 6, issue 4
doi: 10.26508/lsa.202201877

Lucía Ramos-Alonso et al.
Mitotic chromosome condensation resets chromatin to safeguard transcriptional homeostasis during interphase
Proceedings of the National Academy of Sciences 2023, vol. 120, issue 4
doi: 10.1073/pnas.2210593120

Akos Gyenis et al.
Genome-wide RNA polymerase stalling shapes the transcriptome during aging
Nature Genetics 2023, vol. 55, issue 2
doi: 10.1038/s41588-022-01279-6

Julien Broséus et al.
Molecular characterization of Richter syndrome identifies de novo diffuse large B-cell lymphomas with poor prognosis
Nature Communications 2023, vol. 14, issue 1
doi: 10.1038/s41467-022-34642-6