Publications 2023

Gonçalo Pereira et al.
Characterization of circulating microRNA profiles of postpartum dairy cows with persistent subclinical endometritis
Journal of Dairy Science 2023, vol. 106, issue 12
doi: 10.3168/jds.2023-23616

Hugo Caro et al.
BioConvert: a comprehensive format converter for life sciences
NAR Genomics and Bioinformatics 2023, vol. 5, issue 3
doi: 10.1093/nargab/lqad074

Janaina Rigonato et al.
Ocean-wide comparisons of mesopelagic planktonic community structures
ISME Communications 2023, vol. 3, issue 1
doi: 10.1038/s43705-023-00279-9

Salomé Decombis et al.
CARD11 gain of function upregulates BCL2A1 expression and promotes resistance to targeted therapies combination in B-cell lymphoma
Blood 2023, vol. 142, issue 18
doi: 10.1182/blood.2023020211

Marion Thibaudin et al.
First-line durvalumab and tremelimumab with chemotherapy in RAS-mutated metastatic colorectal cancer: a phase 1b/2 trial
Nature Medicine 2023, vol. 29, issue 8
doi: 10.1038/s41591-023-02497-z

Fabrice Ntakirutimana et al.
Genome-wide association analysis identifies natural allelic variants associated with panicle architecture variation in African rice, Oryza glaberrima Steud
G3: Genes, Genomes, Genetics 2023, vol. 13, issue 10
doi: 10.1093/g3journal/jkad174

Yujiao Zhang et al.
Genetic inhibition of CARD9 accelerates the development of atherosclerosis in mice through CD36 dependent-defective autophagy
Nature Communications 2023, vol. 14, issue 1
doi: 10.1038/s41467-023-40216-x

Thibault Kervarrec et al.
Sweat Gland Tumors Arising on Acral Sites
American Journal of Surgical Pathology 2023, vol. 47, issue 10
doi: 10.1097/pas.0000000000002098

Aurélie Delumeau et al.
Bacterial microbiota management in free-living amoebae (Heterolobosea lineage) isolated from water: The impact of amoebae identity, grazing conditions, and passage number
Science of The Total Environment 2023, vol. 900
doi: 10.1016/j.scitotenv.2023.165816

Wladimir Malaga et al.
Natural mutations in the sensor kinase of the PhoPR two-component regulatory system modulate virulence of ancestor-like tuberculosis bacilli
PLOS Pathogens 2023, vol. 19, issue 7
doi: 10.1371/journal.ppat.1011437

Dimitry Y. Sorokin et al.
Trichlorobacter ammonificans, a dedicated acetate-dependent ammonifier with a novel module for dissimilatory nitrate reduction to ammonia
The ISME Journal 2023
doi: 10.1038/s41396-023-01473-2

Mathieu Chicard et al.
Cell-Free DNA Extracted from CSF for the Molecular Diagnosis of Pediatric Embryonal Brain Tumors
Cancers 2023, vol. 15, issue 13
doi: 10.3390/cancers15133532

Kamar Ghaibour et al.
An Efficient Protocol for CUT&RUN Analysis of FACS-Isolated Mouse Satellite Cells
Journal of Visualized Experiments 2023, issue 197
doi: 10.3791/65215

Cyril Esnault et al.
G4access identifies G-quadruplexes and their associations with open chromatin and imprinting control regions
Nature Genetics 2023
doi: 10.1038/s41588-023-01437-4

Eoghan King et al.
Paraburkholderia phytofirmans PsJN colonization of rice endosphere triggers an atypical transcriptomic response compared to rice native Burkholderia s.l. endophytes
Scientific Reports 2023, vol. 13, issue 1
doi: 10.1038/s41598-023-37314-7

Frédérik Oger et al.
Pharmacological HDAC inhibition impairs pancreatic β-cell function through an epigenome-wide reprogramming
iScience 2023, vol. 26, issue 7
doi: 10.1016/j.isci.2023.107231

Thomas Cokelaer et al.
Reprohackathons: promoting reproducibility in bioinformatics through training
Bioinformatics 2023, vol. 39, issue Supplement_1
doi: 10.1093/bioinformatics/btad227

Lola Welsch et al.
Mu Opioid Receptor–Positive Neurons in the Dorsal Raphe Nucleus Are Impaired by Morphine Abstinence
Biological Psychiatry 2023, vol. 94, issue 11
doi: 10.1016/j.biopsych.2023.06.024

Mathias Boulanger et al.
DeSUMOylation of chromatin-bound proteins limits the rapid transcriptional reprogramming induced by daunorubicin in acute myeloid leukemias
Nucleic Acids Research 2023, vol. 51, issue 16
doi: 10.1093/nar/gkad581

Manuel Rodrigues et al.
Nivolumab plus chemoradiotherapy in locally-advanced cervical cancer: the NICOL phase 1 trial
Nature Communications 2023, vol. 14, issue 1
doi: 10.1038/s41467-023-39383-8

Marta Lourenço et al.
Phages against Noncapsulated Klebsiella pneumoniae: Broader Host range, Slower Resistance
Microbiology Spectrum 2023
doi: 10.1128/spectrum.04812-22

Guillaume Davidson et al.
Mesenchymal-like Tumor Cells and Myofibroblastic Cancer-Associated Fibroblasts Are Associated with Progression and Immunotherapy Response of Clear Cell Renal Cell Carcinoma
Cancer Research 2023, vol. 83, issue 17
doi: 10.1158/0008-5472.can-22-3034

Carlo Yague-Sanz et al.
Chromatin remodeling by Pol II primes efficient Pol III transcription
Nature Communications 2023, vol. 14, issue 1
doi: 10.1038/s41467-023-39387-4

Pauline Auffret et al.
Transgenerational exposure to ocean acidification impacts the hepatic transcriptome of European sea bass (Dicentrarchus labrax)
BMC Genomics 2023, vol. 24, issue 1
doi: 10.1186/s12864-023-09353-x

Pauline Auffret et al.
Transgenerational exposure to ocean acidification impacts the hepatic transcriptome of European sea bass (Dicentrarchus labrax)
BMC Genomics 2023, vol. 24, issue 1
doi: 10.1186/s12864-023-09353-x

Alex Clavería-Cabello et al.
Identification and experimental validation of druggable epigenetic targets in hepatoblastoma
Journal of Hepatology 2023, vol. 79, issue 4
doi: 10.1016/j.jhep.2023.05.031

Lisa Sikkema et al.
An integrated cell atlas of the lung in health and disease
Nature Medicine 2023, vol. 29, issue 6
doi: 10.1038/s41591-023-02327-2

Guillaume Martin et al.
Shared pedigree relationships and transmission of unreduced gametes in cultivated banana
Annals of Botany 2023
doi: 10.1093/aob/mcad065

Fabien Lombard et al.
Open science resources from the Tara Pacific expedition across coral reef and surface ocean ecosystems
Scientific Data 2023, vol. 10, issue 1
doi: 10.1038/s41597-022-01757-w

Alex J. Veglia et al.
Endogenous viral elements reveal associations between a non-retroviral RNA virus and symbiotic dinoflagellate genomes
Communications Biology 2023, vol. 6, issue 1
doi: 10.1038/s42003-023-04917-9