Charlotte Paës et al.
Early Introduction of Plant Polysaccharides Drives the Establishment of Rabbit Gut Bacterial Ecosystems and the Acquisition of Microbial Functions
mSystems 2022, vol. 7, issue 3
doi: 10.1128/msystems.00243-22

Metabarcoding

Frédérique Changey et al.
Catching change in microbial diversity indicators under different soil organic matter managements: Higher taxonomic resolution, better discrimination?
Ecological Indicators 2022, vol. 139
doi: 10.1016/j.ecolind.2022.108897

Metabarcoding

Nicolas Serafini et al.
Trained ILC3 responses promote intestinal defense
Science 2022, vol. 375, issue 6583
doi: 10.1126/science.aaz8777

MetabarcodingModèleTranscriptome

Tristan Cordier et al.
Patterns of eukaryotic diversity from the surface to the deep-ocean sediment
Science Advances 2022, vol. 8, issue 5
doi: 10.1126/sciadv.abj9309

Metabarcoding

Juan José Pierella Karlusich et al.
A robust approach to estimate relative phytoplankton cell abundances from metagenomes
Molecular Ecology Resources 2022
doi: 10.1111/1755-0998.13592

MetabarcodingMetagenomeRegulome

Blandine Trouche et al.
Diversity and Biogeography of Bathyal and Abyssal Seafloor Bacteria and Archaea Along a Mediterranean—Atlantic Gradient
Frontiers in Microbiology 2021, vol. 12
doi: 10.3389/fmicb.2021.702016

Metabarcoding

Clemens Schauberger et al.
Microbial community structure in hadal sediments: high similarity along trench axes and strong changes along redox gradients
The ISME Journal 2021
doi: 10.1038/s41396-021-01021-w

Metabarcoding

Miriam I. Brandt et al.
Evaluating sediment and water sampling methods for the estimation of deep-sea biodiversity using environmental DNA
Scientific Reports 2021, vol. 11, issue 1
doi: 10.1038/s41598-021-86396-8

MetabarcodingMéthode

Miriam I. Brandt et al.
Bioinformatic pipelines combining denoising and clustering tools allow for more comprehensive prokaryotic and eukaryotic metabarcoding
Molecular Ecology Resources 2021
doi: 10.1111/1755-0998.13398

BioinformatiqueMetabarcodingMéthode

Pierre-Yves Pascal et al.
Feeding in spatangoids: the case of Abatus Cordatus in the Kerguelen Islands (Southern Ocean)
Polar Biology 2021, vol. 44, issue 4
doi: 10.1007/s00300-021-02841-4

Metabarcoding

Christophe Djemiel et al.
BIOCOM-PIPE: a new user-friendly metabarcoding pipeline for the characterization of microbial diversity from 16S, 18S and 23S rRNA gene amplicons
BMC Bioinformatics 2020, vol. 21, issue 1
doi: 10.1186/s12859-020-03829-3

BioinformatiqueInnovationMetabarcoding

Franziska A. Stressmann et al.
Mining zebrafish microbiota reveals key community-level resistance against fish pathogen infection
The ISME Journal 2020, vol. 15, issue 3
doi: 10.1038/s41396-020-00807-8

MetabarcodingTranscriptome

Shinichi Sunagawa et al.
Tara Oceans: towards global ocean ecosystems biology
Nature Reviews Microbiology 2020, vol. 18, issue 8
doi: 10.1038/s41579-020-0364-5

Metabarcoding

Miriam I. Brandt et al.
An Assessment of Environmental Metabarcoding Protocols Aiming at Favoring Contemporary Biodiversity in Inventories of Deep-Sea Communities
Frontiers in Marine Science 2020, vol. 7
doi: 10.3389/fmars.2020.00234

Metabarcoding

Inger Greve Alsos et al.
The Treasure Vault Can be Opened: Large-Scale Genome Skimming Works Well Using Herbarium and Silica Gel Dried Material
Plants 2020, vol. 9, issue 4
doi: 10.3390/plants9040432

Metabarcoding

Olivier Zemb et al.
Absolute quantitation of microbes using 16S rRNA gene metabarcoding: A rapid normalization of relative abundances by quantitative PCR targeting a 16S rRNA gene spike‐in standard
MicrobiologyOpen 2020, vol. 9, issue 3
doi: 10.1002/mbo3.977

InnovationMetabarcodingMéthode

Gabriel Gorsky et al.
Expanding Tara Oceans Protocols for Underway, Ecosystemic Sampling of the Ocean-Atmosphere Interface During Tara Pacific Expedition (2016–2018)
Frontiers in Marine Science 2019, vol. 6
doi: 10.3389/fmars.2019.00750

InnovationMetabarcodingMetagenome

Emile Faure et al.
Mixotrophic protists display contrasted biogeographies in the global ocean
The ISME Journal 2019, vol. 13, issue 4
doi: 10.1038/s41396-018-0340-5

Metabarcoding

S Terrat et al.
Improving soil bacterial taxa–area relationships assessment using DNA meta-barcoding
Heredity 2014, vol. 114, issue 5
doi: 10.1038/hdy.2014.91

Metabarcoding

Sebastien Terrat et al.
Meta-barcoded evaluation of the ISO standard 11063 DNA extraction procedure to characterize soil bacterial and fungal community diversity and composition
Microbial Biotechnology 2014, vol. 8, issue 1
doi: 10.1111/1751-7915.12162

Metabarcoding