Publications 2021

Daniel Jeffery et al.
CENP-A overexpression promotes distinct fates in human cells, depending on p53 status
Communications Biology 2021, vol. 4, issue 1
doi: 10.1038/s42003-021-01941-5

Christoph Muus et al.
Single-cell meta-analysis of SARS-CoV-2 entry genes across tissues and demographics
Nature Medicine 2021, vol. 27, issue 3
doi: 10.1038/s41591-020-01227-z

Tracy Rabilloud et al.
Single-cell profiling identifies pre-existing CD19-negative subclones in a B-ALL patient with CD19-negative relapse after CAR-T therapy
Nature Communications 2021, vol. 12, issue 1
doi: 10.1038/s41467-021-21168-6

Paul Gueguen et al.
Contribution of resident and circulating precursors to tumor-infiltrating CD8+ T cell populations in lung cancer
Science Immunology 2021, vol. 6, issue 55
doi: 10.1126/sciimmunol.abd5778

Charlotte Pandiani et al.
Single-cell RNA sequencing reveals intratumoral heterogeneity in primary uveal melanomas and identifies HES6 as a driver of the metastatic disease
Cell Death & Differentiation 2021
doi: 10.1038/s41418-020-00730-7

Sara Castagnola et al.
Agonist-induced functional analysis and cell sorting associated with single-cell transcriptomics characterizes cell subtypes in normal and pathological brain
Genome Research 2020, vol. 30, issue 11
doi: 10.1101/gr.262717.120

Mickael Meyer et al.
Profiling the Non-genetic Origins of Cancer Drug Resistance with a Single-Cell Functional Genomics Approach Using Predictive Cell Dynamics
Cell Systems 2020, vol. 11, issue 4
doi: 10.1016/j.cels.2020.08.019

Aleksandra S. Chikina et al.
Macrophages Maintain Epithelium Integrity by Limiting Fungal Product Absorption
Cell 2020, vol. 183, issue 2
doi: 10.1016/j.cell.2020.08.048

Thomas Baranek et al.
High Dimensional Single-Cell Analysis Reveals iNKT Cell Developmental Trajectories and Effector Fate Decision
Cell Reports 2020, vol. 32, issue 10
doi: 10.1016/j.celrep.2020.108116

Kevin Lebrigand et al.
High throughput error corrected Nanopore single cell transcriptome sequencing
Nature Communications 2020, vol. 11, issue 1
doi: 10.1038/s41467-020-17800-6

Abdenour Abbas et al.
The activation trajectory of plasmacytoid dendritic cells in vivo during a viral infection
Nature Immunology 2020, vol. 21, issue 9
doi: 10.1038/s41590-020-0731-4

Nadège Vernet et al.
Meiosis occurs normally in the fetal ovary of mice lacking all retinoic acid receptors
Science Advances 2020, vol. 6, issue 21
doi: 10.1126/sciadv.aaz1139

Yann Kieffer et al.
Single-Cell Analysis Reveals Fibroblast Clusters Linked to Immunotherapy Resistance in Cancer
Cancer Discovery 2020, vol. 10, issue 9
doi: 10.1158/

Waradon Sungnak et al.
SARS-CoV-2 entry factors are highly expressed in nasal epithelial cells together with innate immune genes
Nature Medicine 2020, vol. 26, issue 5
doi: 10.1038/s41591-020-0868-6

Annabelle Gérard et al.
High-throughput single-cell activity-based screening and sequencing of antibodies using droplet microfluidics
Nature Biotechnology 2020, vol. 38, issue 6
doi: 10.1038/s41587-020-0466-7

L.E. Zaragosi et al.
Using single-cell RNA sequencing to unravel cell lineage relationships in the respiratory tract
Biochemical Society Transactions 2020, vol. 48, issue 1
doi: 10.1042/bst20191010

Emilie Dambroise et al.
FGFR3 is a positive regulator of osteoblast expansion and differentiation during zebrafish skull vault development

bioRXiv 2020
doi: 10.1101/2020.01.02.884155

Violaine Randrian et al.
Cell Migration Promotes the Functional Diversification of Gut Dendritic Cells
SSRN Electronic Journal 2019
doi: 10.2139/ssrn.3499176

Charles Fouillade et al.
FLASH Irradiation Spares Lung Progenitor Cells and Limits the Incidence of Radio-induced Senescence
Clinical Cancer Research 2019, vol. 26, issue 6
doi: 10.1158/1078-0432.ccr-19-1440

Rafael Galupa et al.
A Conserved Noncoding Locus Regulates Random Monoallelic Xist Expression across a Topological Boundary
Molecular Cell 2019, vol. 77, issue 2
doi: 10.1016/j.molcel.2019.10.030

L. Felipe Benites et al.
Single cell ecogenomics reveals mating types of individual cells and ssDNA viral infections in the smallest photosynthetic eukaryotes
Philosophical Transactions of the Royal Society B: Biological Sciences 2019, vol. 374, issue 1786
doi: 10.1098/rstb.2019.0089

Sandra Ruiz García et al.
Novel dynamics of human mucociliary differentiation revealed by single-cell RNA sequencing of nasal epithelial cultures
Development 2019
doi: 10.1242/dev.177428

Yaiza M. Castillo et al.
Assessing the viral content of uncultured picoeukaryotes in the global‐ocean by single cell genomics
Molecular Ecology 2019, vol. 28, issue 18
doi: 10.1111/mec.15210

Roberta Ragazzini et al.
EZHIP constrains Polycomb Repressive Complex 2 activity in germ cells
Nature Communications 2019, vol. 10, issue 1
doi: 10.1038/s41467-019-11800-x

François Legoux et al.
Molecular mechanisms of lineage decisions in metabolite-specific T cells
Nature Immunology 2019, vol. 20, issue 9
doi: 10.1038/s41590-019-0465-3

Simon Durand et al.
ALK mutation dynamics and clonal evolution in a neuroblastoma model exhibiting two ALK mutations
Oncotarget 2019, vol. 10, issue 48
doi: 10.18632/oncotarget.27119

Julie Piccand et al.
Rfx6 promotes the differentiation of peptide-secreting enteroendocrine cells while repressing genetic programs controlling serotonin production
Molecular Metabolism 2019, vol. 29
doi: 10.1016/j.molmet.2019.08.007

Kevin Grosselin et al.
High-throughput single-cell ChIP-seq identifies heterogeneity of chromatin states in breast cancer
Nature Genetics 2019, vol. 51, issue 6
doi: 10.1038/s41588-019-0424-9

Mélanie Durand et al.
Human lymphoid organ cDC2 and macrophages play complementary roles in T follicular helper responses
The Journal of Experimental Medicine 2019, vol. 216, issue 7
doi: 10.1084/jem.20181994

Seeleuthner Y et al.
Single-cell genomics of multiple uncultured stramenopiles reveals underestimated functional diversity across oceans
Nature Communications 2018 9(1)
doi: 10.1038/s41467-017-02235-3