Publications 2021

Miriam I. Brandt et al.
Bioinformatic pipelines combining denoising and clustering tools allow for more comprehensive prokaryotic and eukaryotic metabarcoding
Molecular Ecology Resources 2021
doi: 10.1111/1755-0998.13398

Ozvan Bocher et al.
Extension of SKAT to multi-category phenotypes through a geometrical interpretation
European Journal of Human Genetics 2021
doi: 10.1038/s41431-020-00792-8

Dimitra Sakoula et al.
Enrichment and physiological characterization of a novel comammox Nitrospira indicates ammonium inhibition of complete nitrification
The ISME Journal 2020
doi: 10.1038/s41396-020-00827-4

Agnès Barbance et al.
Genetic Analysis of Citrobacter sp.86 Reveals Involvement of Corrinoids in Chlordecone and Lindane Biotransformations
Frontiers in Microbiology 2020, vol. 11
doi: 10.3389/fmicb.2020.590061

Benjamin Istace et al.
BiSCoT: improving large eukaryotic genome assemblies with optical maps
PeerJ 2020, vol. 8
doi: 10.7717/peerj.10150

Christophe Djemiel et al.
BIOCOM-PIPE: a new user-friendly metabarcoding pipeline for the characterization of microbial diversity from 16S, 18S and 23S rRNA gene amplicons
BMC Bioinformatics 2020, vol. 21, issue 1
doi: 10.1186/s12859-020-03829-3

Sihem Guesmi et al.
Draft genome sequence of Promicromonospora panici sp. nov., a novel ionizing-radiation-resistant actinobacterium isolated from roots of the desert plant Panicum turgidum
Extremophiles 2020
doi: 10.1007/s00792-020-01207-8

Guillaume Martin et al.
Chromosome reciprocal translocations have accompanied subspecies evolution in bananas
The Plant Journal 2020, vol. 104, issue 6
doi: 10.1111/tpj.15031

Thomas Baranek et al.
High Dimensional Single-Cell Analysis Reveals iNKT Cell Developmental Trajectories and Effector Fate Decision
Cell Reports 2020, vol. 32, issue 10
doi: 10.1016/j.celrep.2020.108116

Scheila G. Mucha et al.
Mycoplasma hyopneumoniae J elicits an antioxidant response and decreases the expression of ciliary genes in infected swine epithelial cells
Scientific Reports 2020, vol. 10, issue 1
doi: 10.1038/s41598-020-70040-y

Marisol Domínguez et al.
The impact of transposable elements on tomato diversity
Nature Communications 2020, vol. 11, issue 1
doi: 10.1038/s41467-020-17874-2

Albin Teulet et al.
Phylogenetic distribution and evolutionary dynamics of nod and T3SS genes in the genus Bradyrhizobium
Microbial Genomics 2020, vol. 6, issue 9
doi: 10.1099/mgen.0.000407

Mourdas Mohamed et al.
A Transposon Story: From TE Content to TE Dynamic Invasion of Drosophila Genomes Using the Single-Molecule Sequencing Technology from Oxford Nanopore
Cells 2020, vol. 9, issue 8
doi: 10.3390/cells9081776

Elodie Gazanion et al.
Genome wide distribution of G-quadruplexes and their impact on gene expression in malaria parasites
PLOS Genetics 2020, vol. 16, issue 7
doi: 10.1371/journal.pgen.1008917

Olivier Quenez et al.
Detection of copy-number variations from NGS data using read depth information: a diagnostic performance evaluation
European Journal of Human Genetics 2020
doi: 10.1038/s41431-020-0672-2

Magali Hennion et al.
FORK-seq: replication landscape of the Saccharomyces cerevisiae genome by nanopore sequencing
Genome Biology 2020, vol. 21, issue 1
doi: 10.1186/s13059-020-02013-3

C. Dutech et al.
An easy and robust method for isolation and validation of single-nucleotide polymorphic markers from a first Erysiphe alphitoides draft genome
Mycological Progress 2020, vol. 19, issue 6
doi: 10.1007/s11557-020-01580-w

Marlène Roy et al.
Viral infection impacts transposable element transcript amounts inDrosophila
Proceedings of the National Academy of Sciences 2020, vol. 117, issue 22
doi: 10.1073/pnas.2006106117

Sabrina Saltaji et al.
Lactococcus lactis Diversity Revealed by Targeted Amplicon Sequencing of purR Gene, Metabolic Comparisons and Antimicrobial Properties in an Undefined Mixed Starter Culture Used for Soft-Cheese Manufacture
Foods 2020, vol. 9, issue 5
doi: 10.3390/foods9050622

Frédéric Peyrusson et al.
Intracellular Staphylococcus aureus persisters upon antibiotic exposure
Nature Communications 2020, vol. 11, issue 1
doi: 10.1038/s41467-020-15966-7

Waradon Sungnak et al.
SARS-CoV-2 entry factors are highly expressed in nasal epithelial cells together with innate immune genes
Nature Medicine 2020, vol. 26, issue 5
doi: 10.1038/s41591-020-0868-6

Yuvia A. Pérez-Rico et al.
Demarcation of Topologically Associating Domains Is Uncoupled from Enriched CTCF Binding in Developing Zebrafish
iScience 2020, vol. 23, issue 5
doi: 10.1016/j.isci.2020.101046

Lucrecia C. Terán et al.
Nucleotide sequence and analysis of pRC12 and pRC18, two theta-replicating plasmids harbored by Lactobacillus curvatus CRL 705
PLOS ONE 2020, vol. 15, issue 4
doi: 10.1371/journal.pone.0230857

Adam A. Caparco et al.
Metagenomic Mining for Amine Dehydrogenase Discovery
Advanced Synthesis & Catalysis 2020, vol. 362, issue 12
doi: 10.1002/adsc.202000094

Guillaume Gautreau et al.
PPanGGOLiN: Depicting microbial diversity via a partitioned pangenome graph
PLOS Computational Biology 2020, vol. 16, issue 3
doi: 10.1371/journal.pcbi.1007732

Estelle Talouarn et al.
Genome wide association analysis on semen volume and milk yield using different strategies of imputation to whole genome sequence in French dairy goats
BMC Genetics 2020, vol. 21, issue 1
doi: 10.1186/s12863-020-0826-9

Clément Cuello et al.
A systems biology approach uncovers a gene co-expression network associated with cell wall degradability in maize
PLOS ONE 2019, vol. 14, issue 12
doi: 10.1371/journal.pone.0227011

Maïté Courel et al.
GC content shapes mRNA storage and decay in human cells
eLife 2019, vol. 8
doi: 10.7554/elife.49708

Xue-Gong Li et al.
Genome analysis of Crassaminicella sp. SY095, an anaerobic mesophilic marine bacterium isolated from a deep-sea hydrothermal vent on the Southwest Indian Ridge
Marine Genomics 2019, vol. 52
doi: 10.1016/j.margen.2019.100733

Marina Pinskaya et al.
Reference-free transcriptome exploration reveals novel RNAs for prostate cancer diagnosis
Life Science Alliance 2019, vol. 2, issue 6
doi: 10.26508/lsa.201900449