Mutualisation des compétences et des équipements français
pour l’analyse génomique et la bio-informatique

Accueil > publications > Publications 2017 (n=258)

Publications 2017 (n=258)

258.GenomEast Epanchintsev A. et al. Cockayne’s syndrome A and B proteins regulate transcription arrest after genotoxic stress by promoting ATF3 degradation. Mol Cell (2017) Dec ; 68(6):1054-1066 e6. doi : 10.1016/j.molcel.2017.11.009
257.GenomEast Kebede, AF. et al. Histone propionylation is a mark of active chromatin. Nat Struct Mol Biol. (2017) Dec ; 24(12):1048-1056. doi : 10.1038/nsmb.3490
256.MicroScope Lassalle F. et al. Ancestral genome estimation reveals the history of ecological diversification in Agrobacterium. Genome Biol Evol. (2017) Dec ; 9(12):3413-3431. doi : 10.1093/gbe/evx255
255.Genoscope Adam IKU. et al. Microbial communities in pyrene amended soil-compost mixture and fertilized soil. AMB Express (2017) Dec ;7(1):7. doi : 10.1186/s13568-016-0306-9
254.Genoscope Terrat S. et al. Correction : Mapping and predictive variations of soil bacterial richness across France. PLoS One (2017) Dec ; 12(12):e0190128. doi : 10.1371/journal.pone.0190128
253.GeT Pham N-P. et al. Comparative genomic analysis of Brevibacterium strains : insights into key genetic determinants involved in adaptation to the cheese habitat. BMC Genomics (2017) Dec ; 18(1):955. doi : 10.1186/s12864-017-4322-1
252.CNRGH Biancalana V. et al. Affected female carriers of MTM1 mutations display a wide spectrum of clinical and pathological involvement : delineating diagnostic clues. Acta Neuropathol. (2017) Dec ; 134(6):889-904. doi : 10.1007/s00401-017-1748-0
251.CNRGH Bruel AL. et al. Expanding the clinical spectrum of recessive truncating mutations of KLHL7 to a Bohring-Opitz-like phenotype. J Med Genet. (2017) Dec ; 54(12):830-835. doi : 10.1136/jmedgenet-2017-104748
250.CNRGH Flachsbart F. et al. Identification and characterization of two functional variants in the human longevity gene FOXO3. Nat Commun. 2017 Dec ; 8(1):2063. doi : 10.1038/s41467-017-02183-y.
249.CNRGH Renault V. et al. aCNViewer : Comprehensive genome-wide visualization of absolute copy number and copy neutral variations. PLoS One (2017) Dec ; 12(12):e0189334. doi : 10.1371/journal.pone.0189334
248.Institut Pasteur Eggerbauer E. et al. The recently discovered bokeloh bat lyssavirus : Insights into its genetic heterogeneity and spatial distribution in Europe and the population genetics of its primary host. Advances in virus research (Elsevier), (2017) 99 : 199-232. doi : 10.1016/bs.aivir.2017.07.004
247.MGX Bonneaud N. et al. Control of nerve cord formation by Engrailed and Gooseberry-Neuro : A multi-step, coordinated process. Dev Biol. (2017) Dec ; 432(2):273-285.doi : 10.1016/j.ydbio.2017.10.018
246.MGX Puighermanal E. et al. Ribosomal Protein S6 Phosphorylation Is Involved in Novelty-Induced Locomotion, Synaptic Plasticity and mRNA Translation. Front Mol Neurosci. (2017) Dec ; 10:419. doi : 10.3389/fnmol.2017.00419
245.MGX Berardi L. et al. Proteome analysis of urticating Setae from Thaumetopoea pityocampa (Lepidoptera : Notodontidae). J Med Entomol. (2017) Nov ; 54(6):1560-1566. doi : 10.1093/jme/tjx144
244.GeT Van de Paer C. et al. Prospects on the evolutionary mitogenomics of plants : a case study on the olive family (Oleaceae). Mol Ecol Resour. (2017) Nov 24. doi : 10.1111/1755-0998.12742 [Epub ahead of print]
243.GeT Kocher A. et al. High-throughput sequencing of kDNA amplicons for the analysis of Leishmania minicircles and identification of Neotropical species. Parasitology (2017) Nov : 1-8. doi : 10.1017/S0031182017002013 [Epub ahead of print]
242.GenomEast Ennen, M. et al. MITF-High and MITF-Low cells and a novel subpopulation expressing genes of both cell states contribute to intra- and intertumoral heterogeneity of Primary Melanoma. Clin Cancer Res. (2017) Nov ; 23(22) : 7097-7107. doi : 10.1158/1078-0432.CCR-17-0010
241.GeT Kocher A. et al. iDNA screening : disease vectors as vertebrate samplers. Mol Ecol. (2017) Nov ; 26(22):6478-6486. doi : 10.1111/mec.14362
240.CNRGH Cerino M. et al. Genetic characterization of a French cohort of GNE-mutation negative inclusion body myopathy patients with exome sequencing. Muscle Nerve (2017) Nov ; 56(5):993-997. doi : 10.1002/mus.25638
239.CNRGH Fleischer T. et al. DNA methylation at enhancers identifies distinct breast cancer lineages. Nat Commun. (2017) Nov ; 8(1):1379. doi : 10.1038/s41467-017-00510-x
238.CNRGH Letouze E. et al. Mutational signatures reveal the dynamic interplay of risk factors and cellular processes during liver tumorigenesis. Nat Commun. (2017) Nov ; 8(1):1315. doi : 10.1038/s41467-017-01358-x
237.CNRGH Machiela MJ. et al. Genetic variants related to longer telomere length are associated with increased risk of Renal Cell Carcinoma. Europ. Urol. (2017) Nov ; 72 (5) : 747-754
236.CNRGH Manes G. et al. A novel duplication of PRMD13 causes North Carolina macular dystrophy : overexpression of PRDM13 orthologue in drosophila eye reproduces the human phenotype. Hum Mol Genet. (2017) Nov ; 26(22):4367-4374. doi : 10.1093/hmg/ddx322
235.CNRGH Tronik-Le Roux D. et al. Novel landscape of HLA-G isoforms expressed in clear cell renal cell carcinoma patients. Mol Oncol. (2017) Nov ; 11(11):1561-1578. doi : 10.1002/1878-0261
234.Institut Curie Chauvin C. et al. High-throughput drug screening identifies Pazopanib and Clofilium Tosylate as promising treatments for Malignant Rhabdoid Tumors. Cell Rep. (2017) Nov ; 21(7):1737-1745. doi : 10.1016/j.celrep.2017.10.076
233.Institut Pasteur Weill FX. et al. Genomic history of the seventh pandemic of cholera in Africa. Science (2017) Nov ; 358(6364):785-789. doi : 10.1126/science.aad5901
232.Genoscope Warnke M. et al. A patchwork pathway for oxygenase-independent degradation of side chain containing steroids. Environ Microbiol. (2017) Nov ; 19(11):4684-4699. doi : 10.1111/1462-2920.13933
231.Institut Pasteur Domman D. et al. Integrated view of Vibrio cholerae in the Americas. Science (2017) Nov ; 358(6364):789-793. doi : 10.1126/science.aao2136
230.Institut Pasteur Chaix R. et al. Epigenetic clock analysis in long-term meditators. Psychoneuroendocrinol. (2017) Nov ; 85:210-214. doi : 10.1016/j.psyneuen.2017.08.016
229.Genoscope Costea PI. et al. Towards standards for human fecal sample processing in metagenomic studies. Nat Biotechnol. (2017) Nov ; 35(11):1069-1076. doi : 10.1038/nbt.3960
228.GeT Rousseau E. et al. Estimating virus effective population size and selection without neutral markers. PLoS Pathog. (2017) Nov ;13(11):e1006702. doi : 10.1371/journal.ppat.1006702
227.CNRGH Abath Neto O. et al. Common and variable clinical, histological, and imaging findings of recessive RYR1-related centronuclear myopathy patients. Neuromuscul Disord. (2017) Nov ; 27(11):975-985. doi : 10.1016/j.nmd.2017.05.016
226.Institut Pasteur Salmier A. et al. Virome analysis of two sympatric bat species (Desmodus rotundus and Molossus molossus) in French Guiana. PLoS One (2017) Nov ; 12(11):e0186943. doi : 10.1371/journal.pone.0186943
225.Institut Pasteur Machado L. et al. In situ fixation redefines quiescence and early activation of skeletal muscle stem cells. Cell Rep. (2017) Nov ; 21(7):1982-1993. doi : 10.1016/j.celrep.2017.10.080
224.MicroScope & Genoscope Ficko-Blean E. et al. Carrageenan catabolism is encoded by a complex regulon in marine heterotrophic bacteria. Nat Commun. (2017) Nov ; 8(1):1685. doi : 10.1038/s41467-017-01832-6
223.UCAGenomiX Zarif H. et al. CD8(+) T cells are essential for the effects of enriched environment on hippocampus-dependent behavior, hippocampal neurogenesis and synaptic plasticity. Brain Behav Immun. (2017) Nov ; pii : S0889-1591(17)30517-2. doi : 10.1016/j.bbi.2017.11.016
222.ENS Milet C. et al. Egr1 deficiency induces browning of inguinal subcutaneous white adipose tissue in mice. Sci. Rep. (2017) Nov ; 7(1):16153. doi : 10.1038/s41598-017-16543-7.
221.UCAGenomiX Medina C. et al. Characterization of microRNAs from Arabidopsis galls highlights a role for miR159 in the plant response to the root-knot nematode Meloidogyne incognita. New Phytol. (2017) Nov ; 216(3):882-896. doi : 10.1111/nph.14717
220.TGML Ragheb R. et al. Interplay between trauma and Pseudomonas entomophila infection in flies : a central role of the JNK pathway and CrebA. Sci Rep. (2017) Nov ; 7(1):16222. doi : 10.1038/s41598-017-14969-7
219.TGML Ragheb R. et al. Vorinostat and Mithramycin A in combination therapy as an interesting strategy for the treatment of Sézary T lymphoma : a transcriptomic approach. Arch Dermatol Res. (2017) Oct ; 309(8):611-623. doi : 10.1007/s00403-017-1761-0
218.MicroScope Capela D. et al. Recruitment of a lineage-specific virulence regulatorypathway promotes intracellular infection by a plant pathogen experimentally evolved into a legume symbiont. Mol Biol Evol. (2017) Oct ; 34(10):2503-2521. doi : 10.1093/molbev/msx165
217.GeT Auffret P. et al. Draft genome sequence of enterohemorrhagic Escherichia coli O157:H7 strain MC2 isolated from cattlde in France. Genome Announc. (2017) Oct ; 5(40). pii : e01097-17. doi : 10.1128/genomeA.01097-17
216.GeT Kocher A. et al. Evaluation of shortmitochondrial metabarcodes for the identification of Amazonian mammals. Methods in Ecology and Evolution (2017) Oct ; 8 : 1276–1283. doi : 10.1111/2041-210X.12729
215.CNRGH Charmet R. et al. Association of impaired renal function with venous thrombosis : A genetic risk score approach. Thromb Res. (2017) Oct ; 158:102-107. doi : 10.1016/j.thromres.2017.08.015
214.CNRGH Malfatti E. et al. Recessive myopalladin mutations cause congenital cap myopathy with unusual rods. Neuromus. Dis. (2017) Oct ; 27 : S185-S185.
213.CNRGH Nelson I. et al. Novel recessive splice site mutation in POPDC1 (BVES) is associated with first-degree atrioventricular block and muscular dystrophy. Neuromus. Dis. (2017) Oct ; 27 : S139-S140.
212.CNRGH Troudet R. et al. RNA signature and prediction to treatment response in first episode schizophrenia. European Neuropsychopharm. (2017) Oct ; 27 : S597-S597.
211.Institut Pasteur Martins RM. et al. An ApiAP2 member regulates expression of clonally variant genes of the human malaria parasite Plasmodium falciparum. Sci Rep. (2017) Oct ;7(1):14042. doi : 10.1038/s41598-017-12578-y
210.Institut Pasteur Cabanel N. et al. Molecular bases for multidrug resistance in Yersinia pseudotuberculosis. Int J Med Microbiol. (2017) Oct ; 307(7):371-381. doi : 10.1016/j.ijmm.2017.08.005
209.Genoscope Bal E. et al. Mutations in ACTRT1 and its enhancer RNA elements lead to aberrant activation of Hedgehog signaling in inherited and sporadic basal cell carcinomas. Nat Med. (2017) Oct ; 23(10):1226-1233. doi : 10.1038/nm.4368
208.Genoscope Danchin EGJ. et al. The transcriptomes of Xiphinema index and Longidorus elongatus suggest independent acquisition of some plant parasitism genes by horizontal gene transfer in early-branching Nematodes. Genes (2017) Oct ; 8(10). pii : E287. doi : 10.3390/genes8100287
207.Genoscope Fournier T. et al. High-Quality de novo genome assembly of the Dekkera bruxellensis yeast using nanopore MinION sequencing. G3 (2017) Oct ; 7(10):3243-3250. doi : 10.1534/g3.117.300128
206.Genoscope Gervais J. et al. Different waves of effector genes with contrasted genomic location are expressed by Leptosphaeria maculans during cotyledon and stem colonization of oilseed rape. Mol Plant Pathol. (2017) Oct ; 18(8):1113-1126. doi : 10.1111/mpp.12464
205.Genoscope Lanaud C. et al. Deciphering the Theobroma cacao self-incompatibility system : from genomics to diagnostic markers for self-compatibility. J Exp Bot. (2017) Oct ; 68(17):4775-4790. doi : 10.1093/jxb/erx293
204.Genoscope Recanati A. et al. A spectral algorithm for fast de novo layout of uncorrected long nanopore reads. Bioinformatics (2017) Oct ; 33(20):3188-3194. doi : 10.1093/bioinformatics/btx370
203.Genoscope Schmidt MHW. et al. De novo assembly of a new Solanum pennellii accession using nanopore sequencing. Plant Cell (2017) Oct ; 29(10):2336-2348. doi : 10.1105/tpc.17.00521
202.Genoscope Terrat S. et al. Mapping and predictive variations of soil bacterial richness across France. PLoS One (2017) Oct ; 12(10):e0186766. doi : 10.1371/journal.pone.0186766
201.Institut Curie Plouhinec JL. et al. A molecular atlas of the developing ectoderm defines neural, neural crest, placode, and nonneural progenitor identity in vertebrates. PLoS Biol. (2017) Oct ; 15(10):e2004045.doi : 10.1371/journal.pbio.2004045
200.MGX Ceolin L. et al. Cell Type-Specific mRNA Dysregulation in Hippocampal CA1 Pyramidal Neurons of the Fragile X Syndrome Mouse Model. Front Mol Neurosci. (2017) Oct ; 10:340. doi : 10.3389/fnmol.2017.00340
199.MGX Varrault A. et al. Identification of Plagl1/Zac1 binding sites and target genes establishes its role in the regulation of extracellular matrix genes and the imprinted gene network. Nucleic Acids Res. (2017) Oct 13 ;45(18):10466-10480. doi : 10.1093/nar/gkx672
198.MGX Loire E. et al. Do changes in gene expression contribute to sexual isolation and reinforcement in the house mouse ? Mol Ecol. (2017) Oct ; 26(19):5189-5202. doi : 10.1111/mec.14212
197.ENS Saudemont B. et al. The fitness cost of mis-splicing is the main determinant of alternative splicing patterns. Genome Biology (2017) Oct ; 18(1):208. doi : 10.1186/s13059-017-1344-6.
196.GeT Frachon L. et al. Intermediate degrees of synergistic pleiotropy drive adaptive evolution in ecological time. Nature Ecology & Evolution (2017) Oct ; 1:1551–1561 doi:10.1038/s41559-017-0297-1
195.GenOuest Cohen-Boulakia S. et al. Scientific workflows for computational reproducibility in the life sciences : Status, challenges and opportunities. Future Generation Computer Systems (2017) Oct ; 75:284-298. doi:10.1016/j.future.2017.01.012.
194.ENS Ivanova C. et al. Genome sequencing and transcriptome analysis of Trichoderma reesei QM9978 strain reveals a distal chromosome translocation to be responsible for loss of vib1 expression and loss of cellulase induction. Biotechnology for Biofuels (2017) Sep ; 10:209. doi : 10.1186/s13068-017-0897-7.
193.Genoscope Argout X. et al. The cacao Criollo genome v2.0 : an improved version of the genome for genetic and functional genomic studies. BMC Genomics (2017), Sep ; 18(1):730. doi : 10.1186/s12864-017-4120-9
192.Genoscope Arrigoni R. et al. A new sequence data set of SSU rRNA gene for Scleractinia and its phylogenetic and ecological applications. Mol Ecol Resour. (2017) Sep ; 17(5):1054-1071. doi : 10.1111/1755-0998.12640
191.Genoscope Madoui MA. et al. New insights into global biogeography, population structure and natural selection from the genome of the epipelagic copepod Oithona. Mol Ecol. (2017) Sep ; 26(17):4467-4482. doi : 10.1111/mec.14214
190.Genoscope Martin G. et al. Evolution of the Banana genome (Musa acuminata) is Impacted by large chromosomal translocations. Mol Biol Evol. (2017) Sep ; 34(9):2140-2152. doi : 10.1093/molbev/msx164
189.CNRGH Ivanova ELet al. Homozygous truncating variants in TBC1D23 cause Pontocerebellar Hypoplasia and alter cortical development. Am J Hum Genet. (2017) Sep ; 101(3):428-440. doi : 10.1016/j.ajhg.2017.07.010
188.CNRGH Su XP. et al. NSD1 inactivation and SETD2 mutation drive a convergence toward loss of function of H3K36 writers in Clear Cell Renal Cell Carcinomas.Cancer Res. (2017) Sept ; 77 (18) : 4835-4845 doi : 10.1158/0008-5472.CAN-17-0143
187.MicroScope Chaignaud P. et al. Genomic and transcriptomic analysis of growth-supporting dehalogenation of chlorinated methanes in Methylobacterium. Front Microbiol. (2017) Se ; 8:1600. doi : 10.3389/fmicb.2017.01600
186.MicroScope Rochat T. et al. Genomic characterization of Flavobacterium psychrophilum serotypes and development of a multiplex PCR-based serotyping scheme. Front in Microbiol.(2017) Sep ; 8:1752. doi : 10.3389/fmicb.2017.01752
185.MicroScope & .MGX Payelleville A. et al. DNA adenine methyltransferase (Dam) overexpression impairs Photorhabdus luminescens Motility and Virulence. Front Microbiol. (2017) Sep ; 8 : 1671 doi : 10.3389/fmicb.2017.01671
184.MicroScope Medigue C. et al. MicroScope-an integrated resource for community expertise of gene functions and comparative analysis of microbial genomic and metabolic data. In Brief Bioinformatics (2017) Sep ; doi : 10.1093/bib/bbx11. [Epub ahead of print]
183.MicroScope Belda E. et al. Accurate microbial genome annotation using an integrated and user-friendly environment for community expertise of gene functions : The MicroScope Platform. In Hydrocarbon and Lipid Microbiology Protocols : Genetic, Genomic and System Analyses of Pure Cultures (2017) pp 141-169. Berlin, Heidelberg
182.GenOuest & MGX Gouin A. et al. Two genomes of highly polyphagous lepidopteran pests (Spodoptera frugiperda, Noctuidae) with different host-plant ranges. Scie. Rep. (2017) Sep ; 7(1):11816. doi : 10.1038/s41598-017-10461-4
181.GeT & GenOuest Eoche-Bosy D. et al.. Genome scans on experimentally evolved populations reveal candidate regions for adaptation to plant resistance in the potato cyst nematode Globodera pallida. Mol Ecol. (2017) Sep ; 26(18):4700-4711. doi : 10.1111/mec.14240
180.CNRGH Sims R. et al. Rare coding variants in PLCG2, ABI3, and TREM2 implicate microglial-mediated innate immunity in Alzheimer’s disease. Nat. Genetics (2017) Sept ; 49(9):1373-1384. doi : 10.1038/ng.3916.
179.Institut Curie Boeva V. et al. Heterogeneity of neuroblastoma cell identity defined by transcriptional circuitries. Nature Genetics (2017) Sep ; 49(9):1408-1413. doi : 10.1038/ng.3921.
178.Institut Curie Goudot C. et al. Aryl Hydrocarbon receptor controls monocyte differentiation into dendritic cells versus macrophages. Immunity (2017) Sep ; 47(3):582-596.e6. doi : 10.1016/j.immuni.2017.08.016
177.ENS Bonnet A. et al. Quaking RNA-binding proteins control early myofibril formation by modulating Tropomyosin. Dev Cell. (2017) Sep ; 42(5):527-541.e4. doi : 10.1016/j.devcel.2017.08.004.
176.GenomEast Ghoumid J. et al.Blepharocheilodontic syndrome is a CDH1 pathway-related disorder due to mutations in CDH1 and CTNND1. Genet Med. (2017) Sep ;19(9):1013-1021. doi : 10.1038/gim.2017.11.
175.MGX Garcia-Seco D. et al. Transcriptome and proteome analysis reveal new insight into proximal and distal responses of wheat to foliar infection by Xanthomonas translucens. Sci Rep. (2017) Aug ;7(1):10157. doi : 10.1038/s41598-017-10568-8
174.Genoscope Alberti A. et al. Viral to metazoan marine plankton nucleotide sequences from the Tara Oceans expedition. Scientific Data (2017) Aug ; 4, e170093, doi:10.1038/sdata.2017.93.
173.PRABI Galia W. et al. Strand-specific transcriptomes of Enterohemorrhagic Escherichia coli in response to interactions with ground beef microbiota : interactions between microorganisms in raw meat. BMC Genomics (2017) Aug ; 18(1):574. doi : 10.1186/s12864-017-3957-2.
172.Institut Pasteur Dickson LB. et al. Carryover effects of larval exposure to different environmental bacteria drive adult trait variation in a mosquito vector. Sci Adv (2017) Aug ; 3(8):e1700585. doi : 10.1126/sciadv.1700585.
171.TGML Hervé M. et al. Translational identification of transcriptional signatures of major depression and antidepressant response. Front. Mol. in Neuroscience. (2017) Aug ; 10:248.[ doi : 10.3389/fnmol.2017.00248
170.MicroScope Galia W. et al. Strand-specific transcriptomes of Enterohemorrhagic Escherichia coli in response to interactions with ground beef microbiota : interactions between microorganisms in raw meat. BMC Genomics (2017) Aug ;18(1):574. doi : 10.1186/s12864-017-3957-2
169.Genoscope Duarte M. et al. Functional soil metagenomics : elucidation of polycyclic aromatic hydrocarbon degradation potential following 12 years of in situ bioremediation. Environ Microbiol. (2017) Aug ;19(8):2992-3011. doi : 10.1111/1462-2920.13756
168.Genoscope Sun S. et al. Fungal genome and mating system transitions facilitated by chromosomal translocations involving intercentromeric recombination. PLoS Biol. (2017) Aug ; 15(8):e2002527. doi : 10.1371/journal.pbio.2002527
167.Genoscope ten Hoopen P. et al. The metagenomic data life-cycle : standards and best practices. GigaScience (2017) Aug ; 6(8):1-11. doi : 10.1093/gigascience/gix047
166.MicroScope Blanchard L. et al. Conservation and diversity of the IrrE/DdrO-controlled radiation response in radiation-resistant Deinococcus bacteria. MicrobiologyOpen (2017) Aug ; 6(4). doi : 10.1002/mbo3.477
165.GeT Pérez-Pascual D. et al. The complete genome sequence of the fish pathogen Tenacibaculum maritimum provides insights into virulence mechanisms. Front Microbiol. (2017) Aug ; 8:1542. doi : 10.3389/fmicb.2017.01542
164.CNRGH Curtit E. et al. Assessment of the prognostic role of a 94-single nucleotide polymorphisms risk score in early breast cancer in the SIGNAL/PHARE prospective cohort : no correlation with clinico-pathological characteristics and outcomes. Breast Cancer Res. (2017) Aug ; 19(1):98. doi : 10.1186/s13058-017-0888-4
163.CNRGH Genin E. et al. The French Exome (FREX) Project : A Population-based panel of exomes to help filter out common local variants. Genetic Epidemiology (2017) Aug ; 41 (7) : p. 691-691. The 2017 Annual Meeting of the International Genetic Epidemiology Society doi : 10.1002/gepi.22062
162.CNRGH Le Guennec K. et al. 17q21.31 duplication causes prominent tau-related dementia with increased MAPT expression. Mol Psychiatry (2017) Aug ; 22(8):1119-1125. doi : 10.1038/mp.2016.226
161.CNRGH Pierron D. et al. Genomic landscape of human diversity across Madagascar. Proc Natl Acad Sci U S A (2017) Aug ; 114(32):E6498-E6506. doi : 10.1073/pnas
160.CNRGH Simandi Z. et al. RXR heterodimers orchestrate transcriptional control of neurogenesis and cell fate specification. Mol Cell Endocrinol. (2017) Aug ; pii : S0303-7207(17)30413-6. doi : 10.1016/j.mce.2017.07.033
159.Institut Curie Cabel L. et al. Circulating tumor DNA changes for early monitoring of anti-PD1 immunotherapy : a proof-of-conceptstudy. Ann Oncol. (2017) Aug ; 28(8):1996-2001. doi : 10.1093/annonc/mdx212
158.MGX Morchikh M. et al. HEXIM1 and NEAT1 long non-coding RNA form a multi-subunit complex that regulates DNA-mediated innate immune response. Mol Cell. (2017) Aug ; 67(3):387-399.e5.doi : 10.1016/j.molcel.2017.06.020.
157.GenomEast Baratin M. et al. T Cell zone resident macrophages silently dispose of apoptotic cells in the lymph node. Immunity (2017) Aug ; 47(2):349-362.e5. doi : 10.1016/j.immuni.2017.07.019.
156.ATCG Blanc-Mathieu R. et al. Population genomics of picophytoplankton unveils novel chromosome hypervariability. Sci Adv. (2017) Jul ; 3(7) : e1700239. doi : 10.1126/sciadv.1700239.
155.CNRGH Bellenguez C. et al. Contribution to Alzheimer’s disease risk of rare variants in TREM2, SORL1, and ABCA7 in 1779 cases and 1273 controls. Neurobiol. Aging (2017) Jul ; pii : S0197-4580(17)30232-4. doi : 10.1016/j.neurobiolaging.2017.07.001.
154.GenomEast Niewiadomska-Cimicka A. et al. Genome-wide analysis of RARbeta transcriptional targets in Mouse striatum links retinoic acid signaling with Huntington’s disease and other neurodegenerative disorders. Mol Neurobiol. (2017) Jul ; 54(5):3859-3878. doi : 10.1007/s12035-016-0010-4.
153.ENS Perrin S. et al. Aozan : an automated post-sequencing data-processing pipeline. Bioinformatics (2017) Jul ; 33(14):2212-2213. doi : 10.1093/bioinformatics/btx154.
152.ENS Thierion E. et al. Krox20 hindbrain regulation incorporates multiple modes of cooperation between cis-acting elements. PLoS Genet. (2017) Jul ; 13(7):e1006903. doi : 10.1371/journal.pgen.1006903.
151.Institut Pasteur Farasin J. et al Comparison of biofilm formation and motility processes in arsenic-resistant Thiomonas spp. strains revealed divergent response to arsenite. Microb Biotechnol. (2017) Jul ; 10(4):789-803. doi : 10.1111/1751-7915.12556.
150.UCAGenomiX Lupu-Plesu M. et al. Effects of proton versus photon irradiation on (lymph)angiogenic, inflammatory, proliferative and anti-tumor immune responses in head and neck squamous cell carcinoma. Oncogenesis (2017) Jul ; 6(7):e354. doi : 10.1038/oncsis.2017.56.
149.TGML Tsagmo Ngoune JM. et al. Transcriptional profiling of Midguts prepared from Trypanosoma/T. congolense-positive Glossina palpalis palpalis collected from two distinct Cameroonian Foci : coordinated signatures of the Midguts’ remodeling as T. congolense-supportive niches. Frontiers in Immunology (2017) Jul ; 8:876. doi : 10.3389/fimmu.2017.00876.
148.MicroScope Gully D. et al. Complete genome sequence of Bradyrhizobium sp. ORS285, a photosynthetic strain able to establish Nod Factor-Dependent or Nod Factor-Independent symbiosis with Aeschynomene Legumes. Genome Announc. (2017) Jul ; 5(30). pii : e00421-17. doi : 10.1128/genomeA.00421-17
147.MicroScope Pancrace C. et al. Rearranged biosynthetic gene cluster and synthesis of hassallidin E in Planktothrix serta PCC 8927. ACS Chem Biol. (2017) Jul ; 12(7):1796-1804. doi : 10.1021/acschembio
146.Genoscope Nattier R. et al. Phylogeny and diversification of the cloud forest Morpho sulkowskyi group (Lepidoptera, Nymphalidae) in the evolving Andes. Zool Scr. (2017) Jul ; 46(4):459-472.
145.GeT Blanc-Mathieu R. et al. Population genomics of picophytoplankton unveils novel chromosome hypervariability. Sci Adv. (2017) Jul ; 3(7):e1700239. doi : 10.1126/sciadv.1700239
144.GeT Fariello MI. et al. Accounting for linkage disequilibrium in genome scans for selection without individual genotypes : The local score approach. Mol Ecol. (2017) Jul ; 26(14):3700-3714. doi : 10.1111/mec.14141
143.GeT Mach N. et al. The effects of weaning methods on gut microbiota composition and Horse physiology. Front Physiol. (2017) Jul ; 8:535. doi : 10.3389/fphys.2017.00535
142.Get-Bioinfo Cochetel N. et al. Root transcriptomic responses of grafted grapevines to heterogeneous nitrogen availability depend on rootstock genotype. J Exp Bot. (2017) Jul ; 68(15):4339-4355.doi : 10.1093/jxb/erx224
141.CNRGH Czimmerer Z. et al. Extensive and functional overlap of the STAT6 and RXR cistromes in the active enhancer repertoire of human CD14+ monocyte derived differentiating macrophages.Mol Cell Endocrinol. (2017) Jul ; pii : S0303-7207(17)30414-8. doi : 10.1016/j.mce.2017.07.034
140.CNRGH Echaniz-Laguna A. et al. HSPB8 haploinsufficiency causes dominant adult-onset axial and distal myopathy. Acta Neuropathol. (2017) Jul ;134(1):163-165. doi : 10.1007/s00401-017-1724-8
139.CNRGH Engel M. et al. Influence of lung CT changes in chronic obstructive pulmonary disease (COPD) on the human lung microbiome. PLoS One (2017) Jul ; 12(7):e0180859. doi : 10.1371/journal.pone.0180859
138.CNRGH Nicolas G. et al. Brain calcifications and PCDH12 variants. Neurol Genet. (2017) Jul ; 3(4):e166. doi : 10.1212/NXG.0000000000000166
137.Institut Pasteur Tirera S. et al. Unraveling the genetic diversity and phylogeny of Leishmania RNA virus 1 strains of infected Leishmania isolates circulating in French Guiana. PLoS Negl Trop Dis. (2017) Jul ;11(7):e0005764 doi : 10.1371/journal.pntd.0005764
136.MicroScope Bringel F. et al. Genome sequence of the dichloromethane-degrading Bacterium Hyphomicrobium sp. strain GJ21. Genome Announc. (2017) Jul ; 5(30). pii : e00622-17. doi : 10.1128/genomeA.00622-17
135.TGML Dao LTM. et al. Genome-wide characterization of mammalian promoters with distal enhancer functions. Nature Genetics. (2017) Jul ; 49(7):1073-1081. doi : 10.1038/ng.3884.
134.GenomEast Martinot E. et al. The bile acid nuclear receptor FXRalpha is a critical regulator of Mouse germ cell fate. Stem Cell Reports (2017) Jul ; 9(1):315-328. doi : 10.1016/j.stemcr.2017.05.036.
133.GenomEast Latrasse D. et al. MAPK-triggered chromatin reprogramming by histone deacetylase in plant innate immunity. Genome Biol. (2017) Jul ; 18(1):131.doi : 10.1186/s13059-017-1261-8.
132.GenomEast Duc C. et al. Arabidopsis ATRX modulates H3.3 occupancy and fine-tunes gene expression. Plant Cell. (2017) Jul ; 29(7):1773-1793. doi : 10.1105/tpc.16.00877.
131.GenomEast Henriques A. et al. Inhibition of beta-glucocerebrosidase activity preserves motor unit integrity in a Mouse model of Amyotrophic Lateral Sclerosis. Sci Rep. (2017) Jul ; 7(1):5235. doi : 10.1038/s41598-017-05313-0.
130.GeT Demars J. et al. Genome-wide identification of the mutation underlying fleece variation and discriminating ancestral hairy species from modern woolly Sheep. Mol Biol Evol. (2017) Jul ; 34(7):1722-1729. doi : 10.1093/molbev/msx114.
129.ATCG. Paulet D. et al. Ribo-seq enlightens codon usage bias. DNA Res. (2017) Jun ; 24(3) : 303–210. doi : 10.1093/dnares/dsw062.
128.Genoscope Blanc-Mathieu R. et al.Hybridization and polyploidy enable genomic plasticity without sex in the most devastating plant-parasitic nematodes. Plos Genetics (2017) Jun ; 13 (6), e1006777, doi : 10.1371/journal.pgen.1006777.
127.MGX Courjol F. et al. Characterization of a nuclear pore protein sheds light on the roles and composition of the Toxoplasma gondii nuclear pore complex. Cell Mol Life Sci. (2017) Jun ; 74(11):2107-2125. doi : 10.1007/s00018-017-2459-3.
126.UCAGenomiX Ponzio G. et al. A new long noncoding RNA (LncRNA) is induced in cutaneous squamous cell carcinoma and downregulates several anticancer and cell-differentiation genes in mouse. J Biol Chem. (2017) Jul ; 292(30):12483-12495. doi : 10.1074/jbc.M117.776260.
125.GeT Badouin H. et al. The sunflower genome provides insights into oil metabolism, flowering and Asterid evolution. Nature (2017) Jun ; 546:148–152. doi:10.1038/nature22380.
124.CNRGH Bruel AL. et al. Fifteen years of research on oral-facial-digital syndromes : from 1 to 16 causal genes. J Med Genet. (2017) Jun ; 54(6):371-380. doi : 10.1136/jmedgenet-2016-104436
123.Institut Curie Pincez T. et al. Feasibility and clinical integration of molecular profiling for target identification in pediatric solid tumors. Pediatr Blood Cancer (2017) Jun ; 64(6). doi : 10.1002/pbc.26365
122.GeT Penaud-Budloo M. et al. Accurate identification and quantification of DNA species by Next-Generation Sequencing in adeno-associated viral vectors produced in Insect cells. Hum Gene Ther Methods (2017) Jun ; 28(3):148-162. doi : 10.1089/hgtb.2016.185
121.CNRGH Louveau B. et al. Clinical value of early detection of circulating tumour DNA-BRAFV600mut in patients with metastatic melanoma treated with a BRAF inhibitor. ESMO Open. (2017) Jun ; 2(2):e000173. doi : 10.1136/esmoopen-2017-000173
120.CNRGH Mauger F. et al. COLD-PCR technologies in the area of personalized medicine : Methodology and Applications. Mol Diagn Ther. (2017) Jun ; 21(3):269-283. doi : 10.1007/s40291-016-0254-8
119.CNRGH Saultier P. et al. Macrothrombocytopenia and dense granule deficiency associated with FLI1 variants : ultrastructural and pathogenic features. Haematologica (2017) Jun ; 102(6):1006-1016. doi : 10.3324/haematol.2016.153577
118.CNRGH Scelo G. et al. Genome-wide association study identifies multiple risk loci for renal cell carcinoma. Nat Commun. (2017) Jun ; 8:15724. doi : 10.1038/ncomms15724
117.CNRGH Simioni M. et al. Genomic investigation of balanced chromosomal rearrangements in patients with abnormal phenotypes. Mol Syndromol. (2017) Jun ; 8(4):187-194.doi : 10.1159/000477084
116.Institut Curie Le Tourneau C. et al. The SHIVA01 trial : what have we learned ? Pharmacogenomics (2017) Jun ; 18(9):831-834. doi : 10.2217/pgs-2017-0062
115.MicroScope Tran TTT. et al. Comparative genome analysis provides insights into both the lifestyle of Acidithiobacillus ferrivorans Strain CF27 and the chimeric nature of the iron-oxidizing Acidithiobacilli genomes. Front Microbiol. (2017) Jun ; 8:1009. doi : 10.3389/fmicb.2017.01009
114.Genoscope Biard T. et al. Biogeography and diversity of Collodaria (Radiolaria) in the global ocean. ISME J (2017) Jun ;11(6):1331-1344. doi : 10.1038/ismej.2017.12
113.Genoscope Cossu M. et al. Flipping chromosomes in deep-sea archaea. PLoS Genet. (2017) Jun ; 13(6):e1006847. doi : 10.1371/journal.pgen.1006847
112.Genoscope Fragoso CA. et al. Genetic architecture of a rice nested association mapping population. G3 (2017) Jun ; 7(6):1913-1926. doi : 10.1534/g3.117.041608
111.Genoscope Spirhanzlova P. et al. Construction and characterization of a BAC library for functional genomics in Xenopus tropicalis. Dev Biol. (2017) Jun ; 426(2):255-260. doi : 10.1016/j.ydbio.2016.05.015
110.MGX Kassambara A. et al. Global miRNA expression analysis identifies novel key regulators of plasma cell differentiation and malignant plasma cell. Nucleic Acids Res. (2017) Jun ; 45(10):5639-5652. doi : 10.1093/nar/gkx327
109.GenomEast Jegu T. et al. The Arabidopsis SWI/SNF protein BAF60 mediates seedling growth control by modulating DNA accessibility. Genome Biol. (2017) Jun ; 18(1):114.[ doi : 10.1186/s13059-017-1246-7
108.GenomEast Papin C. et al.Combinatorial DNA methylation codes at repetitive elements. Genome Res. (2017) Jun ; 27(6):934-946. doi : 10.1101/gr.213983.116.
107.CNRGH Contrepois K. et al. Histone variant H2A.J accumulates in senescent cells and promotes inflammatory gene expression. Nat Commun. (2017) May ; 8:14995. doi : 10.1038/ncomms14995
106.CNRGH Hautefort A. et al. Pulmonary endothelial cell DNA methylation signature in pulmonary arterial hypertension. Oncotarget (2017) May ; 8(32):52995-53016. doi : 10.18632/oncotarget.18031
105.CNRGH Haziza S. et al. Fluorescent nanodiamond tracking reveals intraneuronal transport abnormalities induced by brain-disease-related genetic risk factors. Nat Nanotechnol. (2017) May ; 12(4):322-328. doi : 10.1038/nnano.2016.260
104.GenOuest Boyer F. et al. CSReport : A new computational tool designed for automatic analysis of class switch recombination junctions sequenced by high-throughput sequencing.. J Immunol. (2017) May ;198(10):4148-4155. doi : 10.4049/jimmunol.1601924
103.Genoscope Cerisy T. et al. Evolution of a biomass-fermenting Bacterium to resist lignin phenolics. Appl Environ Microbiol. (2017) May ; 83(11). pii : e00289-17. doi : 10.1128/AEM.00289-17
102.Institut Curie Richer W. et al. Embryonic signature distinguishes pediatric and adult rhabdoid tumors from other SMARCB1-deficient cancers. Oncotarget (2017) May ; 8(21):34245-34257. doi : 10.18632/oncotarget.15939
101.Institut Curie Euceda LR. et al. Metabolic response to Everolimus in patient-derived triple-negative breast cancer xenografts. J Proteome Res. (2017) May ; 16(5):1868-1879. doi : 10.1021/acs.jproteome.6b00918
100.Institut Pasteur Sobhani I. et al. Microbiota as a new indicator of colorectal cancer (CRC) heterogeneity. J Clin Oncology (2017) May ; 35(15) suppl 3615-3615. doi :10.1200/JCO.2017.35.15_suppl.3615
99.Institut Pasteur Leroy M. et al. Rae1/YacP, a new endoribonuclease involved in ribosome-dependent mRNA decay in Bacillus subtilis. EMBO J. (2017) May ; 36(9):1167-1181. doi : 10.15252/embj.201796540
98.MGX Abdou E. et al. RegA plays a key role in oxygen-dependent establishment of persistence and in isocitrate lyase activity, a critical determinant of in vivo Brucella suis pathogenicity. Front Cell Infect Microbiol. (2017) May ; 7:186. doi : 10.3389/fcimb.2017.00186
97.GenomEast Cottard F. et al. Dual effects of constitutively active androgen receptor and full-length androgen receptor for N-cadherin regulation in prostate cancer. Oncotarget (2017) May ; 8(42):72008-72020. [doi : 10.18632/oncotarget.18270
96.PACA- Bioinfo Fabre E. et al. Noumeavirus replication relies on a transient remote control of the host nucleus. Nat Commun. (2017) Apr ; 8:15087. doi : 10.1038/ncomms15087
95.MGX Mohamad R. et al. Mesorhizobium delmotii and Mesorhizobium prunaredense are two new species containing rhizobial strains within the symbiovar anthyllidis. Syst Appl Microbiol. (2017) Apr ; 40:135-143 doi : 10.1016/j.syapm.2017.01.004.
94.TGML Barral S. et al. Histone variant H2A.L.2 guides transition protein-dependent protamine assembly in male germ cells . Molecular Cell (2017) Apr ; 66(1):89-101.e8. doi : 10.1016/j.molcel.2017.02.025.
93.MGX Eckenfelder A. et al. Argonaute proteins regulate HIV-1 multiply spliced RNA and viral production in a Dicer independent manner. Nucleic Acids Res. (2017) Apr ; 45(7):4158-4173. doi : 10.1093/nar/gkw1289
92.PRABI Faucon F. et al. In the hunt for genomic markers of metabolic resistance to pyrethroids in the mosquito Aedes aegypti : An integrated next-generation sequencing approach. PLoS Negl. Trop. Dis. (2017) Apr ; 11(4):e0005526. doi : 10.1371/journal.pntd.0005526.
91.MicroScope Marchetti M. et al. Experimental evolution of rhizobia may lead to either extra- or intracellular symbiotic adaptation depending on the selection regime. Mol. Ecol. (2017) Apr ; 26(7):1818-1831. doi : 10.1111/mec.13895.
90.Migale Deutsch S-M. et al. Deutsch S-M. et al. Identification of proteins involved in the anti-inflammatory properties of Propionibacterium freudenreichii by means of a multi-strain study. Sci. Rep. (2017) Apr ; 7:46409. doi : 10.1038/srep46409.
89.GeT Erill I. et al. Comparative analysis of Ralstonia solanacearum methylomes. Front Plant Sci. (2017) Apr ; 8 : 504.doi : 10.3389/fpls.2017.00504.
88.GeT Mensous M. et al. Diversity and evolution of plastomes in Saharan mimosoids:potential use for phylogenetic and population genetic studies. Tree Genetics & Genomes (2017) Apr ; 13:48. doi : 10.1007/s11295-017-1131-2.
87.GenomEast Tarabay Y. et al. Tex19 paralogs are new members of the piRNA pathway controlling retrotransposon suppression. J Cell Sci. (2017) Apr ; 130(8):1463-1474. doi : 10.1242/jcs.188763.
86.UCAGenomiX Arguel M.J. et al. A cost effective 5΄ selective single cell transcriptome profiling approach with improved UMI design. Nucleic Acids Res. (2017) Apr ; 45(7):e48. doi : 10.1093/nar/gkw1242
85.GenomEast Quartier A. et al. Intragenic FMR1 disease-causing variants : a significant mutational mechanism leading to Fragile-X syndrome. Eur J Hum Genet. (2017) doi : 10.1038/ejhg.2016.204.
84.MicroScope Dupont H. et al. Structural alteration of OmpR as a source of ertapenem resistance in a CTX-M-15-producing Escherichia coli O25b:H4 sequence type 131 clinical isolate. Antimicrob Agents Chemother. (2017) Apr ; 61(5). pii : e00014-17. doi : 10.1128/AAC.00014-17
83.GeT Badouin H. et al. Widespread selective sweeps throughout the genome of model plant pathogenic fungi and identification of effector candidates. Mol Ecol. (2017) Apr ; 26(7):2041-2062. doi : 10.1111/mec.13976
82.CNRGH Dos Santos RS. et al. dUTPase (DUT) is mutated in a novel monogenic syndrome with diabetes and bone marrow failure. Diabetes (2017) Apr ; 66(4):1086-1096. doi : 10.2337/db16-0839
81.CNRGH Fradin D. et al. Genome-wide methylation analysis identifies specific epigenetic marks in severely obese children. Sci Rep. (2017) Apr ; 7:46311. doi : 10.1038/srep46311
80.CNRGH Mercati O. et al. CNTN6 mutations are risk factors for abnormal auditory sensory perception in autism spectrum disorders. Mol Psychiatry (2017) Apr ; 22(4):625-633. doi : 10.1038/mp.2016.61
79.CNRGH Potaczek DP. et al. Epigenetics and allergy : from basic mechanisms to clinical applications. Epigenomics (2017) Apr ; 9(4):539-571. doi : 10.2217/epi-2016-0162
78.CNRGH Schartner V. et al. Dihydropyridine receptor (DHPR, CACNA1S) congenital myopathy. Acta Neuropathol. (2017) Apr ; 133(4):517-533. doi : 10.1007/s00401-016-1656-8
77.CNRGH Suchon P. et al. Protein S Heerlen mutation heterozygosity is associated with venous thrombosis risk. Sci Rep. (2017) Apr ; 7:45507. doi : 10.1038/srep45507
76.CNRGH Tost J. et al. Epigenetics of the immune system and alterations in inflammation and autoimmunity Foreword. Epigenomics (2017) Apr ; 9(4):371-373.doi : 10.2217/epi-2017-0026
75.Institut Pasteur & CNRGH Mercati O. et al. CNTN6 mutations are risk factors for abnormal auditory sensory perception in autism spectrum disorders. Mol Psychiatry (2017) Apr ; 22(4):625-633. doi : 10.1038/mp.2016.61
74.Genoscope Leroy T. et al. Extensive recent secondary contacts between four European white oak species. New Phytol. (2017) Apr ; 214(2):865-878. doi : 10.1111/nph.14413
73.GenOuest Thomas C. et al. Erratum to : Rapid transcriptional plasticity of duplicated gene clusters enables a clonally reproducing aphid to colonise diverse plant species. Genome Biology (2017) Apr ; 18 (1) : 63. doi :10.1186/s13059-017-1202-6
72.Institut Curie Portoso M. et al. PRC2 is dispensable for HOTAIR-mediated transcriptional repression. EMBO J. (2017) Apr ; 36(8):981-994. doi : 10.15252/embj.201695335
71.UCAGenomiX Zangari J. et al. Rapid decay of engulfed extracellular miRNA by XRN1 exonuclease promotes transient epithelial-mesenchymal transition. Nucleic Acids Res. (2017) Apr ; 45(7):4131-4141. doi : 10.1093/nar/gkw1284
70.MGX Hamidou Soumana I. et al. Comparative genomics of Glossina palpalis gambiensis and G. morsitans morsitans to reveal gene orthologs involved in infection by Trypanosoma brucei gambiense. Front Microbiol. (2017) Apr ; 8:540. doi : 10.3389/fmicb.2017.00540.
69.UCAGenomiX Saintamand A. et al. E(μ) and 3’RR IgH enhancers show hierarchic unilateral dependence in mature B-cells. Sci Rep. (2017) Mar ; 7(1):442. doi : 10.1038/s41598-017-00575-0
68.MGX Delpech al. New insights into the anti-pathogenic potential of Lactococcus garvieae against Staphylococcus aureus based on RNA sequencing profiling. Front Microbiol. (2017) Mar ; 8:359. doi : 10.3389/fmicb.2017.00359
67.CNRGH Mobuchon L. et al. A GWAS in uveal melanoma identifies risk polymorphisms in the CLPTM1L locus. NPJ Genom Med. (2017) Mar ; 2. pii : 5. doi : 10.1038/s41525-017-0008-5
66.Institut Pasteur Halloum I. et al. Resistance to Thiacetazone derivatives active against Mycobacterium abscessus involves mutations in the MmpL5 transcriptional repressor MAB_4384. Antimicrob Agents Chemother. (2017) Mar ; 61(4):e02509-02516.
doi : 10.1128/AAC.02509-16
65.Genoscope Chouari R. et al. Eukaryotic molecular diversity at different steps of the wastewater treatment plant process reveals more phylogenetic novel lineages. World J Microbiol Biotechnol. (2017) Mar ; 33(3):44. doi : 10.1007/s11274-017-2217-6
64.PRABI Philippon al. IsoSel : Protein Isoform Selector for phylogenetic reconstructions. PLoS One (2017) Mar ;12(3):e0174250. doi : 10.1371/journal.pone.0174250
63.Migale Coluzzi al. A glimpse into the world of integrative and mobilizable elements in Streptococci reveals an unexpected diversity and novel families of mobilization proteins. Front Microbiol. (2017) Mar ; 8:443. doi : 10.3389/fmicb.2017.00443.
62.Migale Kafsi El H. et al. Unprecedented large inverted repeats at the replication terminus of circular bacterial chromosomes suggest a novel mode of chromosome rescue. Sci. Rep. (2017) Mar ; 7:44331. doi : 10.1038/srep44331.
61.GenomEast Gies V. et al. B cells differentiate in Human thymus and express AIRE. J Allergy Clin Immunol. (2017) Mar ; 139(3):1049-1052.e12. doi : 10.1016/j.jaci.2016.09.044.
60.MGX Bouschet T. et al. In Vitro corticogenesis from embryonic stem cells recapitulates the in vivo epigenetic control of imprinted gene expression. Cereb Cortex. (2017) Mar ; 27:2418-2433 doi : 10.1093/cercor/bhw102.
59.ENS Bussard A. et al. Physiological adjustments and transcriptome reprogramming are involved in the acclimation to salinity gradients in diatoms : Environmental Microbiol. (2017) Mar ; 19(3):909-925. doi : 10.1111/1462-2920.13398.
58.ENS Boulay AC. et al. Translation in astrocyte distal processes sets molecular heterogeneity at the gliovascular interface. Cell Discov. (2017) Mar ; 3:17005. doi : 10.1038/celldisc.2017.5.
57.UCAGenomiX Mercey O. et al. Characterizing isomiR variants within the microRNA-34/449 family. FEBS Lett. (2017) Mar ; 591(5):693-705. doi : 10.1002/1873-3468.12595.
56.MGX Bournaud C. et al. Paraburkholderia piptadeniae sp. nov. and Paraburkholderia ribeironis sp. nov., two root-nodulating symbiotic species of Piptadenia gonoacantha in Brazil. Int J Syst Evol Microbiol. (2017) 67(2):432-440. doi : 10.1099/ijsem.0.001648.
55.Migale Kafsi El H. et al. Unprecedented large inverted repeats at the replication terminus of circular bacterial chromosomes suggest a novel mode of chromosome rescue. Sci Rep (2017) 7:44331.doi : 10.1038/srep44331.
54.MGX Pratlong M. et al. Evidence for a genetic sex determination in Cnidaria, the Mediterranean red coral (Corallium rubrum). R. Soc. Open Sci. (2017) Mar ; 4(3):160880. doi : 10.1098/rsos.160880.
53.CNRGH Bohm J. et al. ORAI1 mutations with distinct channel gating defects in tubular aggregate myopathy. Human Mutation (2017).Mar ; 38 (4) : 426-438 doi : 10.1002/humu.23172
52.CNRGH Arseneault M. et al. Loss of chromosome Y leads to down regulation of KDM5D and KDM6C epigenetic modifiers in clear cell renal cell carcinoma. Sci Rep. (2017) Mar ; 7:44876. doi : 10.1038/srep44876
51.CNRGH Lornage X. et al. Recessive MYPN mutations cause cap myopathy with occasional nemaline rods. Ann Neurol. 2017 Mar ; 81(3):467-473. doi : 10.1002/ana.24900
50.Institut Pasteur Robbe-Saule M. et al. An optimized method for extracting bacterial RNA from Mouse skin tissue colonized by Mycobacterium ulcerans. Front Microbiol. (2017) Mar ; 8:512. doi : 10.3389/fmicb.2017.00512
49.MicroScope Ji B. et al. The chimeric nature of the genomes of marine magnetotactic coccoid-ovoid bacteria defines a novel group of Proteobacteria. Environ Microbiol. (2017) Mar ; 19(3):1103-1119. doi : 10.1111/1462-2920.13637
48.Genoscope Popovic A. et al. Activity screening of environmental metagenomic libraries reveals novel carboxylesterase families. Sci Rep. (2017) Mar ; 7:44103.doi : 10.1038/srep44103
47.MGX Galinier R. et al. A multistrain approach to studying the mechanisms underlying compatibility in the interaction between Biomphalaria glabrata and Schistosoma mansoni. PLoS Negl Trop Dis. (2017) Mar ; 11(3):e0005398. doi : 10.1371/journal.pntd.0005398.
46.MGX & MicroScope Mouammine A. et al. An antimicrobial peptide-resistant minor subpopulation of Photorhabdus luminescens is responsible for virulence. Sci Rep. (2017) Mar ; 7:43670. doi : 10.1038/srep43670.
45.GeT Medugorac I. et al. Whole-genome analysis of introgressive hybridization and characterization of the bovine legacy of Mongolian yaks. Nat. Gen. (2017) Mar ;49(3):470-475. doi:10.1038/ng.3775.
44.PRABI Oger al. Complete genome sequence of the hyperthermophilic Piezophilic Archaeon Pyrococcus kukulkanii NCB100 isolated from the Rebecca’s roost hydrothermal vent in the Guaymas basin. Genome Announc. (2017) Feb ; 5(7). pii : e01667-16. doi : 10.1128/genomeA.01667-16
43.GeT Villain al. Complete mitochondrial genome sequence of the freshwater diatom Asterionella Formosa. Mitochondrial DNA Part B (2017) Feb ; 2:1, 97-98. doi : 10.1080/23802359.2017.1285210
42.GeT Bourgeois YXC. et al. A novel locus on chromosome 1 underlies the evolution of a melanic plumage polymorphism in a wild songbird. R Soc Open Sci. (2017) Feb ; 4(2):160805. doi : 10.1098/rsos.160805
41.Get-Bioinfo Cabau C. et al. Compacting and correcting Trinity and Oases RNA-Seq de novo assemblies. PeerJ. (2017) Feb ; 5 : e2988. doi:10.7717/peerj.2988
40.CNRGH Arandel L. et al. Immortalized human myotonic dystrophy muscle cell lines to assess therapeutic compounds. Disease Models & Mechanisms (2017) Feb ; 10 : 487-497. doi : 10.1242/dmm.027367
39.TGML Paban V. et al. Omics analysis of mouse brain models of human diseases. Gene (2017) Feb ; 600:90-100. doi : 10.1016/j.gene.2016.11.022
38.CNRGH Bougneres P. et al. Using spatio-temporal surveillance data to test the infectious environment of children before type 1 diabetes diagnosis. PLoS One (2017) Feb 2 ; 12(2):e0170658. doi : 10.1371/journal.pone.0170658
37.CNRGH Bruel AL. et al. Autosomal recessive truncating MAB21L1 mutation associated with a syndromic scrotal agenesis. Clin Genet. (2017) Feb ; 91(2):333-338. doi : 10.1111/cge.12794
36.CNRGH Pivot X. et al. Constitutional variants are not associated with HER2-positive breast cancer : results from the SIGNAL/PHARE clinical cohort. NPJ Breast Cancer (2017) Feb ; 3:4. doi : 10.1038/s41523-017-0005-y
35.CNRGH Sefrioui D. et al. Comparison of the quantification of KRAS mutations by digital PCR and E-ice-COLD-PCR in circulating-cell-free DNA from metastatic colorectal cancer patients. Clin Chim Acta (2017) Feb ; 465:1-4. doi : 10.1016/j.cca.2016
34.CNRGH Stoekle HC. et al. Toward dynamic informed consent. Med Sci. (Paris) (2017) Feb ; 33(2):188-192. doi : 10.1051/medsci/20173302015
33.Institut Curie Perez-Rico YA. et al. Comparative analyses of super-enhancers reveal conserved elements in vertebrate genomes. Genome Res. (2017) Feb ; 27(2):259-268. doi : 10.1101/gr.203679.115
32.Institut Pasteur Sahr T. et al. The Legionella pneumophila genome evolved to accommodate multiple regulatory mechanisms controlled by the CsrA-system. PLoS Genet. (2017) Feb ; 13(2):e1006629. doi : 10.1371/journal.pgen.1006629
31.Institut Pasteur Mazuet C. et al. Characterization of Clostridium Baratii Type F strains responsible for an outbreak of botulism linked to beef meat consumption in France. PLOS Currents Outbreaks (2017) Feb ; Edition 1. doi : 10.1371/currents.outbreaks.6ed2fe754b58a5c42d0c33d586ffc606
30.GenOuest Thomas C. et al. Rapid transcriptional plasticity of duplicated gene clusters enables a clonally reproducing aphid to colonise diverse plant species. Genome Biology (2017) Feb ; 18 (1) : 27. doi:10.1186/s13059-016-1145-3
29.Genoscope Meyer M. et al. Impact of biotic and abiotic factors on the expression of fungal effector-encoding genes in axenic growth conditions. Fungal Genet Biol. (2017) Feb ; 99:1-12. doi : 10.1016/j.fgb.2016.12.008
28.Genoscope Castelin M. et al. Untangling species identity in gastropods with polymorphic shells in the genus Bolma Risso, 1826 (Mollusca, Vetigastropoda). Eur J Taxon (2017) Feb ; 288:1-21.
27.Genoscope Istace B. et al. De novo assembly and population genomic survey of natural yeast isolates with the Oxford Nanopore MinION sequencer. Gigascience (2017) Feb ; 6(2):1-13. doi : 10.10 93/gigascience/giw018.
26.Institut Pasteur Sierra B. et al. OSBPL10, RXRA and lipid metabolism confer African-ancestry protection against dengue haemorrhagic fever in admixed Cubans. PLoS Pathog. (2017) Feb ; 13(2):e1006220. doi : 10.1371/journal.ppat.1006220.
25.Institut Pasteur Witkowski B. et al. A surrogate marker of piperaquine-resistant Plasmodium falciparum malaria : a phenotype-genotype association study. Lancet Infect Dis. (2017) Feb ; 17(2):174-183. doi : 10.1016/S1473-3099(16)30415-7.
24.GenomEast Joshi S. et al. TEAD transcription factors are required for normal primary myoblast differentiation in vitro and muscle regeneration in vivo. PLoS Genet. (2017) Feb ; 13(2):e1006600. doi : 10.1371/journal.pgen.1006600.
23.GenomEast Le Gras S. et al. Altered enhancer transcription underlies Huntington’s disease striatal transcriptional signature. Sci Rep. (2017) Feb ; 7:42875. doi : 10.1038/srep42875.
22.Get-Bioinfo Mazzitelli J-Y. et al. De novo transcriptome sequencing and analysis of freshwater snail (Radix balthica) to discover genes and pathways affected by exposure to oxazepam. Ecotoxicology (2017) Jan ; 26 : 127–140. doi:10.1007/s10646-016-1748-1
21.CNRGH Costantino F. et al. A family-based genome-wide association study reveals an association of spondyloarthritis with MAPK14. Ann Rheum Dis. (2017) Jan ; 76(1):310-314. doi : 10.1136/annrheumdis-2016-209449
20.CNRGH Mercier S. et al. Expanding the spectrum of congenital myopathy linked to recessive mutations in SCN4A. Neurology (2017) Jan ; 88(4):414-416. doi : 10.1212/WNL.0000000000003535
19.CNRGH Fleischer T. et al. DNA methylation signature (SAM40) identifies subgroups of the Luminal A breast cancer samples with distinct survival. Oncotarget (2017) Jan ; 8(1):1074-1082. doi : 10.18632/oncotarget.13718
18.CNRGH Fogel O. et al. Epigenetic changes in chronic inflammatory diseases. Adv Protein Chem Struct Biol. (2017) 106:139-189. doi : 10.1016/bs.apcsb.2016.09.003
17.CNRGH Kaut O. et al. Epigenome-wide DNA methylation analysis in siblings and monozygotic twins discordant for sporadic Parkinson’s disease revealed different epigenetic patterns in peripheral blood mononuclear cells. Neurogenetics (2017) Jan ; 18(1):7-22. doi : 10.1007/s10048-016-0497-x
16.CNRGH Khalaf-Nazzal R. et al. Early born neurons are abnormally positioned in the doublecortin knockout hippocampus. Hum Mol Genet. (2017) Jan ; 26(1):90-108. doi : 10.1093/hmg/ddw370
15.CNRGH Garcia-Oliver E. et al. Bdf1 bromodomains are essential for meiosis and the expression of meiotic-specific genes. PLoS Genet. (2017) Jan ; 13(1):e1006541. doi : 10.1371/journal.pgen.1006541
14.CNRGH Neto OA. et al. Nonlethal CHRNA1-related congenital Myasthenic Syndrome with a homozygous null mutation. Canadian Journal of Neurological Sciences (2017) Jan ; 44 (1):125-127
13.Institut Curie Greenberg MV. et al. Transient transcription in the early embryo sets an epigenetic state that programs postnatal growth. Nat Genet. (2017) Jan ; 49(1):110-118. doi : 10.1038/ng.3718
12.Institut Pasteur Zhukova A. et al. Genome-wide transcriptional start site mapping and sRNA identification in the pathogen Leptospira interrogans. Front Cell Infect Microbiol. (2017) Jan ; 7:10. doi : 10.3389/fcimb.2017.00010
11.MicroScope Pancrace C. et al. Insights into the Planktothrix genus : Genomic and metabolic comparison of benthic and planktic strains. Sci Rep. (2017) Jan ; 7:41181. doi : 10.1038/srep41181
10.Genoscope Ebenau-Jehle C. et al. An unusual strategy for the anoxic biodegradation of phthalate. ISME J. (2017) Jan ;11(1):224-236. doi : 10.1038/ismej.2016.91
9.Genoscope Monat C. et al. De novo assemblies of three Oryza glaberrima accessions provide first insights about pan-genome of african rices. Genome Biol Evol. (2017) Jan 1 ; 9(1):1-6. doi : 10.1093/gbe/evw253
8.Genoscope Mangot JF. et al. Accessing the genomic information of unculturable oceanic picoeukaryotes by combining multiple single cells. Sci Rep. (2017) Jan ; 7:41498. doi : 10.1038/srep41498.
7.MicroScope Vallenet D. et al. MicroScope in 2017 : an expanding and evolving integrated resource for community expertise of microbial genomes. Nucleic Acids Res. (2017) Jan ; 45(D1):D517-D528. doi : 10.1093/nar/gkw1101.
6.UCAGenomiX Bonan S. et al. Membrane-bound ICAM-1 contributes to the onset of proinvasive tumor stroma by controlling acto-myosin contractility in carcinoma-associated fibroblasts. Oncotarget. (2017) Jan ; 8(1):1304-1320. doi : 10.18632/oncotarget.13610=13610]
5.GeT Rougemont Q. et al. Inferring the demographic history underlying parallel genomic divergence among pairs of parasitic and non-parasitic lamprey ecotypes. Mol Ecol. (2017) Jan ; 26(1):142-162. doi : 10.1111/mec.13664.
4.GeT Muret K. et al. Long noncoding RNA repertoire in chicken liver and adipose tissue. Genet Sel Evol. (2017) Jan ; 49(1):6. doi : 10.1186/s12711-016-0275-0.
3.GeT Goñi Urriza M. et al. Draft Genome Sequence of DesulfovibrioBerOc1, a Mercury-Methylating Strain. Genome Announc. (2017) Jan ; 5(3) : e01483-16. doi : 10.1128/genomeA.01483-16.
2.MGX Le Quéré A. et al. Genomic characterization of Ensifer aridi, a proposed new species of nitrogen-fixing rhizobium recovered from Asian, African and American deserts. BMC Genomics. (2017) Jan ; 18(1):85. doi : 10.1186/s12864-016-3447-y.
1.GenomEast Gallouet AS. et al. Macrophage production and activation are dependent on TRIM33. Oncotarget (2017) Jan ; 8(3):5111-5122. doi : 10.18632/oncotarget.13872.

update March 2018

Toutes les versions de cet article : [English] [français]