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2017

74.GeT Frachon L. et al. Intermediate degrees of synergistic pleiotropy drive adaptive evolution in ecological time. Nature Ecology & Evolution (2017) Oct ; 1:1551–1561 doi:10.1038/s41559-017-0297-1
73.GenOuest Cohen-Boulakia S. et al. Scientific workflows for computational reproducibility in the life sciences : Status, challenges and opportunities. Future Generation Computer Systems (2017) Oct ; 75:284-298. doi:10.1016/j.future.2017.01.012
72.GeT Bourneuf E. . et al. Rapid Discovery of De Novo Deleterious Mutations in Cattle Enhances the Value of Livestock as Model Species. Sci Rep. (2017) Sep 13 ;7(1):11466. doi : 10.1038/s41598-017-11523-3.
71.CNRGH Sims R. et al. Rare coding variants in PLCG2, ABI3, and TREM2 implicate microglial-mediated innate immunity in Alzheimer’s disease. Nat. Genetics (2017) Sept ;49(9):1373-1384. doi : 10.1038/ng.3916.
70.Institut Curie Boeva V. et al. Heterogeneity of neuroblastoma cell identity defined by transcriptional circuitries. Nature Genetics (2017) Sep ; 49(9):1408-1413. doi : 10.1038/ng.3921.
69.ENS Bonnet A. et al. Quaking RNA-Binding Proteins Control Early Myofibril Formation by Modulating Tropomyosin. Dev Cell. (2017) Sep 11 ;42(5):527-541.e4. doi : 10.1016/j.devcel.2017.08.004.
68.UCAGenomiX Medina C. et al. Characterization of microRNAs from Arabidopsis galls highlights a role for miR159 in the plant response to the root-knot nematode Meloidogyne incognita. New Phytol. 2017 Sep 14. doi : 10.1111/nph.14717.
67.GenomEast Ghoumid J. et al.Blepharocheilodontic syndrome is a CDH1 pathway-related disorder due to mutations in CDH1 and CTNND1. Genet Med. (2017) Sep ;19(9):1013-1021. doi : 10.1038/gim.2017.11.
66.Génoscope Alberti A. et al. Viral to metazoan marine plankton nucleotide sequences from the Tara Oceans expedition. Scientific Data (2017) Aug ; 4, e170093, doi:10.1038/sdata.2017.93
65.PRABI Galia W. et al. Strand-specific transcriptomes of Enterohemorrhagic Escherichia coli in response to interactions with ground beef microbiota : interactions between microorganisms in raw meat. BMC Genomics (2017) Aug 3 ; 18(1):574. doi : 10.1186/s12864-017-3957-2.
64.Institut Pasteur Dickson LB. et al. Carryover effects of larval exposure to different environmental bacteria drive adult trait variation in a mosquito vector. Sci Adv (2017) Aug 16 ;3(8):e1700585. doi : 10.1126/sciadv.1700585.
63.TGML Hervé M. et al. Translational identification of transcriptional signatures of major depression and antidepressant response. Front. Mol. in Neuroscience. (2017) Aug 8 ;10:248.doi : 10.3389/fnmol.2017.00248.
62.MGX Morchikh M. et al. HEXIM1 and NEAT1 Long Non-coding RNA Form a Multi-subunit Complex that Regulates DNA-Mediated Innate Immune Response. Mol Cell. (2017) Aug 3 ; 67(3):387-399.e5.doi : 10.1016/j.molcel.2017.06.020.
61.GenomEast Baratin M. et al. T Cell Zone Resident Macrophages Silently Dispose of Apoptotic Cells in the Lymph Node. Immunity (2017) Aug ;47(2):349-362.e5. doi : 10.1016/j.immuni.2017.07.019.
60.ATCG Blanc-Mathieu R. et al. Population genomics of picophytoplankton unveils novel chromosome hypervariability. Sci Adv. (2017) Jul ; 3(7) : e1700239. doi : 10.1126/sciadv.1700239
59.CNRGH Bellenguez C. et al. Contribution to Alzheimer’s disease risk of rare variants in TREM2, SORL1, and ABCA7 in 1779 cases and 1273 controls. Neurobiol. Aging (2017) Jul 14. pii : S0197-4580(17)30232-4. doi : 10.1016/j.neurobiolaging.2017.07.001
58.GenomEast Niewiadomska-Cimicka A. et al. Genome-wide Analysis of RARbeta Transcriptional Targets in Mouse Striatum Links Retinoic Acid Signaling with Huntington’s Disease and Other Neurodegenerative Disorders. Mol Neurobiol. (2017) Jul ;54(5):3859-3878. doi : 10.1007/s12035-016-0010-4.
57.ENS Perrin S. et al. Aozan : an automated post-sequencing data-processing pipeline. Bioinformatics (2017) Jul 15 ; 33(14):2212-2213. doi : 10.1093/bioinformatics/btx154.
56.ENS Thierion E. et al. Krox20 hindbrain regulation incorporates multiple modes of cooperation between cis-acting elements. PLoS Genet. (2017) Jul 27,13(7):e1006903. doi : 10.1371/journal.pgen.1006903.
55.Institut Pasteur Farasin J. et al Comparison of biofilm formation and motility processes in arsenic-resistant Thiomonas spp. strains revealed divergent response to arsenite. Microb Biotechnol. (2017) Jul ;10(4):789-803. doi : 10.1111/1751-7915.12556.
54.UCAGenomiX Lupu-Plesu M. et al. Effects of proton versus photon irradiation on (lymph)angiogenic, inflammatory, proliferative and anti-tumor immune responses in head and neck squamous cell carcinoma. Oncogenesis (2017) Jul 3 ;6(7):e354. doi : 10.1038/oncsis.2017.56
53.TGML Tsagmo Ngoune JM. et al. Transcriptional Profiling of Midguts Prepared from Trypanosoma/T. congolense-Positive Glossina palpalis palpalis Collected from Two Distinct Cameroonian Foci : Coordinated Signatures of the Midguts’ Remodeling As T. congolense-Supportive Niches. Frontiers in Immunology (2017) Jul 28 ; 8:876. doi : 10.3389/fimmu.2017.00876.
52.TGML Dao LTM. et al. Genome-wide characterization of mammalian promoters with distal enhancer functions. Nature Genetics. (2017) Jul ; 49(7):1073-1081. doi : 10.1038/ng.3884.
51.GenomEast Martinot E. et al. The Bile Acid Nuclear Receptor FXRalpha Is a Critical Regulator of Mouse Germ Cell Fate. Stem Cell Reports (2017) Jul ;9(1):315-328. doi : 10.1016/j.stemcr.2017.05.036.
50.GenomEast Latrasse D. et al. MAPK-triggered chromatin reprogramming by histone deacetylase in plant innate immunity. Genome Biol. (2017) Jul ;18(1):131.doi : 10.1186/s13059-017-1261-8.
49.GenomEast Duc C. et al. Arabidopsis ATRX Modulates H3.3 Occupancy and Fine-Tunes Gene Expression. Plant Cell. (2017) Jul ;29(7):1773-1793. doi : 10.1105/tpc.16.00877.
48.GenomEast Henriques A. et al. Inhibition of beta-Glucocerebrosidase Activity Preserves Motor Unit Integrity in a Mouse Model of Amyotrophic Lateral Sclerosis. Sci Rep. (2017) Jul ;7(1):5235. doi : 10.1038/s41598-017-05313-0.
47.GeT Demars J. et al. Genome-Wide Identification of the Mutation Underlying Fleece Variation and Discriminating Ancestral Hairy Species from Modern Woolly Sheep. Mol Biol Evol. (2017) Jul ;34(7):1722-1729. doi : 10.1093/molbev/msx114.
46.ATCG. Paulet D. et al. Ribo-seq enlightens Codon Usage Bias. DNA Res. (2017) Jun ; 24(3) : 303–210. doi : 10.1093/dnares/dsw062
45.Génoscope Blanc-Mathieu R. et al.Hybridization and polyploidy enable genomic plasticity without sex in the most devastating plant-parasitic nematodes. Plos Genetics (2017) Jun ; 13 (6), e1006777, doi : 10.1371/journal.pgen.1006777.
44.Institut Pasteur Eduati F. et al. Drug resistance mechanisms in colorectal cancer dissected with cell type-specific dynamic logic models Cancer Res. (2017) Jun 15 ;77(12):3364-3375. doi : 10.1158/0008-5472.CAN-17-0078.
43.MGX Courjol F. et al. Characterization of a nuclear pore protein sheds light on the roles and composition of the Toxoplasma gondii nuclear pore complex. Cell Mol Life Sci. (2017) Jun ;74(11):2107-2125. doi : 10.1007/s00018-017-2459-3.
42.UCAGenomiX Ponzio G. et al. A new long noncoding RNA (LncRNA) is induced in cutaneous squamous cell carcinoma and downregulates several anticancer and cell-differentiation genes in mouse. J Biol Chem. (2017) Jul ;292(30):12483-12495. doi : 10.1074/jbc.M117.776260.
41.GeT Badouin H. et al. The sunflower genome provides insights into oil metabolism, flowering and Asterid evolution. Nature (2017) doi:10.1038/nature22380
40.GenomEast Jegu T. et al. The Arabidopsis SWI/SNF protein BAF60 mediates seedling growth control by modulating DNA accessibility. Genome Biol. (2017) Jun ;18(1):114.doi : 10.1186/s13059-017-1246-7.
39.GenomEast Papin C. et al.Combinatorial DNA methylation codes at repetitive elements. Genome Res. (2017) Jun ;27(6):934-946. doi : 10.1101/gr.213983.116.
38.GenomEast Cottard F. et al. Dual effects of constitutively active androgen receptor and full-length androgen receptor for N-cadherin regulation in prostate cancer. Oncotarget
37.MGX Mohamad R. et al. Mesorhizobium delmotii and Mesorhizobium prunaredense are two new species containing rhizobial strains within the symbiovar anthyllidis. Syst Appl Microbiol. (2017) Apr ; 40:135-143 doi : 10.1016/j.syapm.2017.01.004.
36.TGML Barral S. et al. Histone Variant H2A.L.2 Guides Transition Protein-Dependent Protamine Assembly in Male Germ Cells . Molecular Cell (2017) Apr 6 ; 66(1):89-101.e8. doi : 10.1016/j.molcel.2017.02.025.
35.Migale Deutsch S-M. et al. Identification of proteins involved in the anti-inflammatory properties of Propionibacterium freudenreichii by means of a multi-strain study. Sci. Rep. (2017) 7:46409. doi:10.1038/srep46409.
34.PRABI Faucon F. et al. In the hunt for genomic markers of metabolic resistance to pyrethroids in the mosquito Aedes aegypti : An integrated next-generation sequencing approach. PLoS Negl. Trop. Dis. (2017) Apr 5 ; 11(4):e0005526. doi : 10.1371/journal.pntd.0005526.
33.MicroScope Marchetti M. et al. Experimental evolution of rhizobia may lead to either extra- or intracellular symbiotic adaptation depending on the selection regime. Mol. Ecol. (2017) Apr ; 26(7):1818-1831. doi : 10.1111/mec.13895
32.Migale Deutsch S-M. et al. Deutsch S-M. et al. Identification of proteins involved in the anti-inflammatory properties of Propionibacterium freudenreichii by means of a multi-strain study. Sci. Rep. (2017) Apr 13 ;7:46409. doi : 10.1038/srep46409.
31.GeT Erill I. et al. Comparative Analysis of Ralstonia solanacearum Methylomes. Front Plant Sci. (2017) Apr ; 8 : 504.doi : 10.3389/fpls.2017.00504.
30.GeT Mensous M. et al. Diversity and evolution of plastomes in Saharan mimosoids:potential use for phylogenetic and population genetic studies. Tree Genetics & Genomes (2017) Apr ; 13:48. doi : 10.1007/s11295-017-1131-2.
29.GenomEast Tarabay Y. et al. Tex19 paralogs are new members of the piRNA pathway controlling retrotransposon suppression. J Cell Sci. (2017) Apr ;130(8):1463-1474. doi : 10.1242/jcs.188763.
28.GenomEast Quartier A. et al. Intragenic FMR1 disease-causing variants : a significant mutational mechanism leading to Fragile-X syndrome. Eur J Hum Genet. (2017) doi : 10.1038/ejhg.2016.204.
27.MGX Hamidou Soumana I. et al. Comparative Genomics of Glossina palpalis gambiensis and G. morsitans morsitans to Reveal Gene Orthologs Involved in Infection by Trypanosoma brucei gambiense. Front Microbiol. (2017) Apr ;8:540. doi : 10.3389/fmicb.2017.00540.
26.Migale Coluzzi C.et al. A Glimpse into the World of Integrative and Mobilizable Elements in Streptococci Reveals an Unexpected Diversity and Novel Families of Mobilization Proteins. Front Microbiol. (2017) Mar 20 ;8:443. doi : 10.3389/fmicb.2017.00443.
25.Migale Kafsi El H. et al. Unprecedented large inverted repeats at the replication terminus of circular bacterial chromosomes suggest a novel mode of chromosome rescue. Sci. Rep. (2017) Mar 10 ;7:44331. doi : 10.1038/srep44331.
24.GenomEast Gies V. et al. B cells differentiate in Human thymus and express AIRE. J Allergy Clin Immunol. (2017) Mar ;139(3):1049-1052.e12. doi : 10.1016/j.jaci.2016.09.044.
23.MGX Bouschet T. et al. In Vitro Corticogenesis from Embryonic Stem Cells Recapitulates the In Vivo Epigenetic Control of Imprinted Gene Expression. Cereb Cortex. (2017) Mar 1 ; 27:2418-2433 doi : 10.1093/cercor/bhw102.
22.ENS Bussard A. et al. Physiological adjustments and transcriptome reprogramming are involved in the acclimation to salinity gradients in diatoms : Environmental Microbiol. (2017) Mar ;19(3):909-925. doi : 10.1111/1462-2920.13398.
21.ENS Boulay AC. et al. Translation in astrocyte distal processes sets molecular heterogeneity at the gliovascular interface. Cell Discov. (2017) Mar 28 ;3:17005. doi : 10.1038/celldisc.2017.5.
20.UCAGenomiX Mercey O. et al. Characterizing isomiR variants within the microRNA-34/449 family. FEBS Lett. (2017) Mar ;591(5):693-705. doi : 10.1002/1873-3468.12595.
19.MGX Bournaud C. et al. Paraburkholderia piptadeniae sp. nov. and Paraburkholderia ribeironis sp. nov., two root-nodulating symbiotic species of Piptadenia gonoacantha in Brazil. Int J Syst Evol Microbiol. (2017) 67(2):432-440. doi : 10.1099/ijsem.0.001648.
18.Migale Kafsi El H. et al. Unprecedented large inverted repeats at the replication terminus of circular bacterial chromosomes suggest a novel mode of chromosome rescue. Sci Rep (2017), 7:44331.doi : 10.1038/srep44331.
17.MGX Pratlong M. et al. Evidence for a genetic sex determination in Cnidaria, the Mediterranean red coral (Corallium rubrum). R. Soc. Open Sci. (2017) Mar 1 ;4(3):160880. doi : 10.1098/rsos.160880.
16.Génoscope Mangot JF. et al. Accessing the genomic information of unculturable oceanic picoeukaryotes by combining multiple single cells. Sci Rep. (2017) Jan 27 ;7:41498. doi : 10.1038/srep41498.
15.MicroScope Vallenet D. et al. MicroScope in 2017 : an expanding and evolving integrated resource for community expertise of microbial genomes. Nucleic Acids Res. (2017) Jan 4 ;45(D1):D517-D528. doi : 10.1093/nar/gkw1101.
14.GeT Medugorac I. et al. Whole-genome analysis of introgressive hybridization and characterization of the bovine legacy of Mongolian yaks Nat. Gen. (2017) Mar ; 49(3):470-475. doi:10.1038/ng.3775
13.MGX Galinier R. et al. A multistrain approach to studying the mechanisms underlying compatibility in the interaction between Biomphalaria glabrata and Schistosoma mansoni. PLoS Negl Trop Dis. (2017) Mar 2 ;11(3):e0005398. doi : 10.1371/journal.pntd.0005398.
12.MGX Mouammine A. et al. An antimicrobial peptide-resistant minor subpopulation of Photorhabdus luminescens is responsible for virulence. Sci Rep. (2017) Mar 2 ;7:43670. doi : 10.1038/srep43670.
11.Génoscope Istace B. et al. de novo assembly and population genomic survey of natural yeast isolates with the Oxford Nanopore MinION sequencer. Gigascience (2017) Feb ; 6(2):1-13. doi : 10.10 93/gigascience/giw018.
10.Institut Pasteur Sierra B. et al. OSBPL10, RXRA and lipid metabolism confer African-ancestry protection against dengue haemorrhagic fever in admixed Cubans. PLoS Pathog. (2017) Feb 27 ; 13(2):e1006220. doi : 10.1371/journal.ppat.1006220.
9.Institut Pasteur Witkowski B. et al. A surrogate marker of piperaquine-resistant Plasmodium falciparum malaria : a phenotype-genotype association study. Lancet Infect Dis. (2017) Feb ;17(2):174-183. doi : 10.1016/S1473-3099(16)30415-7.
8.GenomEast Joshi S. et al. TEAD transcription factors are required for normal primary myoblast differentiation in vitro and muscle regeneration in vivo. PLoS Genet. (2017) Feb 8 ;13(2):e1006600. doi : 10.1371/journal.pgen.1006600.
7.GenomEast Le Gras S. et al. Altered enhancer transcription underlies Huntington’s disease striatal transcriptional signature. Sci Rep. (2017) Feb 22 ; 7:42875. doi : 10.1038/srep42875.
6.GeT Medugorac I. et al. Whole-genome analysis of introgressive hybridization and characterization of the bovine legacy of Mongolian yaks - Nat. Gen. (2017) Mar ;49(3):470-475. doi:10.1038/ng.3775
5.GeT Rougemont Q. et al. Inferring the demographic history underlying parallel genomic divergence among pairs of parasitic and non-parasitic lamprey ecotypes. Mol Ecol. (2017) Jan ;26(1):142-162. doi : 10.1111/mec.13664.
4.GeT Muret K. et al. Long noncoding RNA repertoire in chicken liver and adipose tissue. Genet Sel Evol. (2017) Jan ;49(1):6. doi : 10.1186/s12711-016-0275-0.
3.GeT Goñi Urriza M. et al. Draft Genome Sequence of DesulfovibrioBerOc1, a Mercury-Methylating Strain. Genome Announc. (2017) Jan ; 5(3) : e01483-16. doi : 10.1128/genomeA.01483-16.
2.MGX Le Quéré A. et al. Genomic characterization of Ensifer aridi, a proposed new species of nitrogen-fixing rhizobium recovered from Asian, African and American deserts. BMC Genomics. (2017) Jan 14 ;18(1):85. doi : 10.1186/s12864-016-3447-y.
1.GenomEast Gallouet AS. et al. Macrophage production and activation are dependent on TRIM33. Oncotarget (2017) Jan 17 ;8(3):5111-5122. doi : 10.18632/oncotarget.13872.

mise à jour sept 2017