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Bioinformatics Platform of Montpellier

-Qualitative transcriptome analysis using RNA-Seq or Digital Gene Expression (SAGE)

- De novo transcriptome assembly (RNA-Seq)

- Hybrid correction of PacBio (Pacific BioSciences) reads for DNA-Seq or RNA-Seq

- Genomic analysis: search for mutations, insertion deletions, rearrangements

- Mapping of genomic or transcriptome reads

De novo transcriptome assembly (RNA-Seq)

Hybrid correction of PacBio (Pacific BioSciences) reads for DNA-Seq or RNA-Seq


- compute server 124 GB of memory, 8 cores

- Disk bay 30 TB

Main achievements:
- Software: LoRDEC, CRAC, MPSCAN, GS_check, PermutMatrix
- genomics project Ostreococcus tauri
- transcriptome analysis in Acute Myeloid Leukaemia
- transcriptome analysis in human embryonic stem cells

Quality Assurance /Certification:
IBISA, RENABI, Cancéropôle Grand Sud Ouest

NGS Platform Manager:
Eric Rivals

Laboratoire d’Informatique, de Robotique et de Microélectronique de Montpellier (LIRMM)
Institut de Biologie Computationnelle (IBC)
CNRS, Université de Montpellier 2

For further information:

Eric Rivals, atgc-hts@lirmm.fr,
tel : 33 (0)4 67 41 86 64

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