A national research infrastructure that brings together French expertise and equipment for genomic analysis and bioinformatics

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Bioinformatics Platform of Montpellier

- Qualitative transcriptome analysis using RNA-Seq or Digital Gene Expression (SAGE)
- De novo transcriptome assembly (RNA-Seq)
- Hybrid correction of PacBio (Pacific BioSciences) reads for DNA-Seq or RNA-Seq
- Genomic analysis: search for mutations, insertion deletions, rearrangements
- Mapping of genomic or transcriptome reads

De novo transcriptome assembly (RNA-Seq)

Hybrid correction of PacBio (Pacific BioSciences) reads for DNA-Seq or RNA-Seq

- compute server 124 GB of memory, 8 cores
- Disk bay 30 TB

Main achievements
- Software: LoRDEC, CRAC, MPSCAN, GS_check, PermutMatrix
- genomics project Ostreococcus tauri
- transcriptome analysis in Acute Myeloid Leukaemia
- transcriptome analysis in human embryonic stem cells

Cancéropôle Grand Sud Ouest

Platform Managment
Eric Rivals

Laboratoire d’Informatique, de Robotique et de Microélectronique de Montpellier (LIRMM)
Institut de Biologie Computationnelle (IBC)
CNRS, Université de Montpellier 2

Eric Rivals
tel : 33 (0)4 67 41 86 64

For further information

last update: 2017

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