Accueil > France Genomic Platforms > Bioinformatics Platform of Montpellier
Bioinformatics Platform of Montpellier
-Qualitative transcriptome analysis using RNA-Seq or Digital Gene Expression (SAGE) De novo transcriptome assembly (RNA-Seq)
Hybrid correction of PacBio (Pacific BioSciences) reads for DNA-Seq or RNA-Seq
Genomic analysis : search for mutations, insertion deletions, rearrangements
Mapping of genomic or transcriptome reads
Equipement compute server 124 GB of memory, 8 cores
Disk bay 30 TB
Main achievements :
- Software : LoRDEC, CRAC, MPSCAN, GS_check, PermutMatrix
- genomics project Ostreococcus tauri
- transcriptome analysis in Acute Myeloid Leukaemia
- transcriptome analysis in human embryonic stem cells
Quality Assurance /Certification :
IBISA, RENABI, Cancéropôle Grand Sud Ouest
NGS Platform Manager :
Eric Rivals
Laboratoire d’Informatique, de Robotique et de Microélectronique de Montpellier (LIRMM)
Institut de Biologie Computationnelle (IBC)
CNRS, Université de Montpellier 2
For further information :
http://www.atgc-montpellier.fr/ngs/
Contact : :
Eric Rivals, atgc-hts@lirmm.fr,
tel : 33 (0)4 67 41 86 64
Toutes les versions de cet article : [English] [français]