Publications 2022

Marta Lourenço et al.
The gut environment regulates bacterial gene expression which modulates susceptibility to bacteriophage infection
Cell Host & Microbe 2022, vol. 30, issue 4
doi: 10.1016/j.chom.2022.03.014

Mathilde Dura et al.
DNMT3A-dependent DNA methylation is required for spermatogonial stem cells to commit to spermatogenesis
Nature Genetics 2022, vol. 54, issue 4
doi: 10.1038/s41588-022-01040-z

Justine Marsolier et al.
H3K27me3 conditions chemotolerance in triple-negative breast cancer
Nature Genetics 2022, vol. 54, issue 4
doi: 10.1038/s41588-022-01047-6

Juliette Mainguené et al.
Human papilloma virus integration sites and genomic signatures in head and neck squamous cell carcinoma
Molecular Oncology 2022, vol. 16, issue 16
doi: 10.1002/1878-0261.13219

Ahmed A. Zayed et al.
Cryptic and abundant marine viruses at the evolutionary origins of Earth’s RNA virome
Science 2022, vol. 376, issue 6589
doi: 10.1126/science.abm5847

Olivia Bonduelle et al.
Dichotomy in Neutralizing Antibody Induction to Peptide-Conjugated Vaccine in Squalene Emulsion Contrast With Aluminum Hydroxide Formulation
Frontiers in Immunology 2022, vol. 13
doi: 10.3389/fimmu.2022.848571

Antoine Régimbeau et al.
Contribution of genome‐scale metabolic modelling to niche theory
Ecology Letters 2022
doi: 10.1111/ele.13954

Helit Cohen et al.
Intracellular Salmonella Paratyphi A is motile and differs in the expression of flagella-chemotaxis, SPI-1 and carbon utilization pathways in comparison to intracellular S. Typhimurium
PLOS Pathogens 2022, vol. 18, issue 4
doi: 10.1371/journal.ppat.1010425

Audrey Laurent et al.
TET2-mediated epigenetic reprogramming of breast cancer cells impairs lysosome biogenesis
Life Science Alliance 2022, vol. 5, issue 7
doi: 10.26508/lsa.202101283

Rodrigo Nalio Ramos et al.
Tissue-resident FOLR2+ macrophages associate with CD8+ T cell infiltration in human breast cancer
Cell 2022, vol. 185, issue 7
doi: 10.1016/j.cell.2022.02.021

Hala Al Adhami et al.
A comparative methylome analysis reveals conservation and divergence of DNA methylation patterns and functions in vertebrates
BMC Biology 2022, vol. 20, issue 1
doi: 10.1186/s12915-022-01270-x

Rachel A. DeWeerd et al.
Prospectively defined patterns of APOBEC3A mutagenesis are prevalent in human cancers
Cell Reports 2022, vol. 38, issue 12
doi: 10.1016/j.celrep.2022.110555

Lucas Morinière et al.
A Comprehensive Overview of the Genes and Functions Required for Lettuce Infection by the Hemibiotrophic Phytopathogen Xanthomonas hortorum pv. vitians
mSystems 2022, vol. 7, issue 2
doi: 10.1128/msystems.01290-21

Adrien Tran Lu Y et al.
Subtle limits to connectivity revealed by outlier loci within two divergent metapopulations of the deep‐sea hydrothermal gastropod Ifremeria nautilei
Molecular Ecology 2022, vol. 31, issue 10
doi: 10.1111/mec.16430

Eglantine Mathieu-Bégné et al.
Transcriptomic Adjustments in a Freshwater Ectoparasite Reveal the Role of Molecular Plasticity for Parasite Host Shift
Genes 2022, vol. 13, issue 3
doi: 10.3390/genes13030525

Laura Piel et al.
Experimental evolution links post-transcriptional regulation to Leishmania fitness gain
PLOS Pathogens 2022, vol. 18, issue 3
doi: 10.1371/journal.ppat.1010375

Emilie Le Goff et al.
Molecular complexity and gene expression controlling cell turnover during a digestive cycle of carnivorous sponge Lycopodina hypogea
Cell and Tissue Research 2022
doi: 10.1007/s00441-022-03610-3

E Guillochon et al.
Transcriptome Analysis of Plasmodium falciparum Isolates From Benin Reveals Specific Gene Expression Associated With Cerebral Malaria
The Journal of Infectious Diseases 2022
doi: 10.1093/infdis/jiac086

James W. Tregear et al.
Micro-RNA-Regulated SQUAMOSA-PROMOTER BINDING PROTEIN-LIKE (SPL) Gene Expression and Cytokinin Accumulation Distinguish Early-Developing Male and Female Inflorescences in Oil Palm (Elaeis guineensis)
Plants 2022, vol. 11, issue 5
doi: 10.3390/plants11050685

Kevin Bellande et al.
PUCHI represses early meristem formation in developing lateral roots of Arabidopsis thaliana
Journal of Experimental Botany 2022
doi: 10.1093/jxb/erac079

C. M. Singleton et al.
The novel genus, ‘Candidatus Phosphoribacter’, previously identified as Tetrasphaera, is the dominant polyphosphate accumulating lineage in EBPR wastewater treatment plants worldwide
The ISME Journal 2022
doi: 10.1038/s41396-022-01212-z

Cédric Finet et al.
Leg length and bristle density, both necessary for water surface locomotion, are genetically correlated in water striders
Proceedings of the National Academy of Sciences 2022, vol. 119, issue 9
doi: 10.1073/pnas.2119210119

Annela Semai et al.
Complete Genome Sequence of Stenotrophomonas maltophilia 1800, a New Bacterial Strain with Potential for Bioremediation of Oil-Contaminated Environments
Microbiology Resource Announcements 2022, vol. 11, issue 2
doi: 10.1128/mra.01116-21

Sarah Temmam et al.
Bat coronaviruses related to SARS-CoV-2 and infectious for human cells
Nature 2022
doi: 10.1038/s41586-022-04532-4

Pedro Goncalves et al.
Defects in mucosal immunity and nasopharyngeal dysbiosis in HSC-transplanted SCID patients with IL2RG/JAK3 deficiency
Blood 2022, vol. 139, issue 17
doi: 10.1182/blood.2021014654

Nathalie Béchon et al.
Bacteroides thetaiotaomicron uses a widespread extracellular DNase to promote bile-dependent biofilm formation
Proceedings of the National Academy of Sciences 2022, vol. 119, issue 7
doi: 10.1073/pnas.2111228119

Florian Rocher et al.
Fusarium graminearum Infection Strategy in Wheat Involves a Highly Conserved Genetic Program That Controls the Expression of a Core Effectome
International Journal of Molecular Sciences 2022, vol. 23, issue 3
doi: 10.3390/ijms23031914

Damien Mornico et al.
RNA Sequencing Reveals Widespread Transcription of Natural Antisense RNAs in Entamoeba Species
Microorganisms 2022, vol. 10, issue 2
doi: 10.3390/microorganisms10020396

Tristan Cordier et al.
Patterns of eukaryotic diversity from the surface to the deep-ocean sediment
Science Advances 2022, vol. 8, issue 5
doi: 10.1126/sciadv.abj9309

Juan José Pierella Karlusich et al.
A robust approach to estimate relative phytoplankton cell abundances from metagenomes
Molecular Ecology Resources 2022
doi: 10.1111/1755-0998.13592