Publications
Tranchant-Dubreuil Christine et al.
FrangiPANe, a tool for creating a panreference using left behind reads
NAR Genomics and Bioinformatics 2023, vol. 5, issue 1
doi: 10.1093/nargab/lqad013
Yaqun Liu et al.
OKseqHMM: a genome-wide replication fork directionality analysis toolkit
Nucleic Acids Research 2023, vol. 51, issue 4
doi: 10.1093/nar/gkac1239
Charlotte Nef et al.
Whole-genome scanning reveals environmental selection mechanisms that shape diversity in populations of the epipelagic diatom Chaetoceros
PLOS Biology 2022, vol. 20, issue 11
doi: 10.1371/journal.pbio.3001893
Pauline Chaignaud et al.
A Methylotrophic Bacterium Growing with the Antidiabetic Drug Metformin as Its Sole Carbon, Nitrogen and Energy Source
Microorganisms 2022, vol. 10, issue 11
doi: 10.3390/microorganisms10112302
Yue Jiao et al.
Association and performance of polygenic risk scores for breast cancer among French women presenting or not a familial predisposition to the disease
European Journal of Cancer 2022, vol. 179
doi: 10.1016/j.ejca.2022.11.007
Eugen Pfeifer et al.
Phage-Plasmids Spread Antibiotic Resistance Genes through Infection and Lysogenic Conversion
mBio 2022, vol. 13, issue 5
doi: 10.1128/mbio.01851-22
Luisa Alessandra Atehortua Martinez et al.
Individual differences in cocaine-induced conditioned place preference in male rats: Behavioral and transcriptomic evidence
Journal of Psychopharmacology 2022, vol. 36, issue 10
doi: 10.1177/02698811221123047
L. Mangiante et al.
OA04.05 MESOMICS Project: Using Whole-Genome Sequencing Data to Fill the Gaps in Malignant Pleural Mesothelioma Molecular Studies
Journal of Thoracic Oncology 2022, vol. 17, issue 9
doi: 10.1016/j.jtho.2022.07.029
Claudia Pogoreutz et al.
High live coral cover and incidence of a pink-spotted coral phenotype on remote reefs off Clipperton Island, Tropical Eastern Pacific
Marine Biology 2022, vol. 169, issue 9
doi: 10.1007/s00227-022-04101-3
Jérôme Mariette et al.
An open-source tool to assess the carbon footprint of research
Environmental Research: Infrastructure and Sustainability 2022, vol. 2, issue 3
doi: 10.1088/2634-4505/ac84a4
Catherine Schramm et al.
Penetrance estimation of Alzheimer disease in SORL1 loss-of-function variant carriers using a family-based strategy and stratification by APOE genotypes
Genome Medicine 2022, vol. 14, issue 1
doi: 10.1186/s13073-022-01070-6
Bertrand Theulot et al.
Genome-wide mapping of individual replication fork velocities using nanopore sequencing
Nature Communications 2022, vol. 13, issue 1
doi: 10.1038/s41467-022-31012-0
Juan José Pierella Karlusich et al.
Coupling Imaging and Omics in Plankton Surveys: State-of-the-Art, Challenges, and Future Directions
Frontiers in Marine Science 2022, vol. 9
doi: 10.3389/fmars.2022.878803
Maëlle Daunesse et al.
ePeak: from replicated chromatin profiling data to epigenomic dynamics
NAR Genomics and Bioinformatics 2022, vol. 4, issue 2
doi: 10.1093/nargab/lqac041
Maxime Wack et al.
viroCapt: A Bioinformatics Pipeline for Identifying Viral Insertion in Human Host Genome
Studies in Health Technology and Informatics 2022
doi: 10.3233/shti220602
Rémi Tournebize et al.
Ecological and genomic vulnerability to climate change across native populations of Robusta coffee ( Coffea canephora )
Global Change Biology 2022, vol. 28, issue 13
doi: 10.1111/gcb.16191
Quentin Piet et al.
A chromosome-level, haplotype-phased Vanilla planifolia genome highlights the challenge of partial endoreplication for accurate whole-genome assembly
Plant Communications 2022, vol. 3, issue 5
doi: 10.1016/j.xplc.2022.100330
Stefano Gnan et al.
Kronos scRT: a uniform framework for single-cell replication timing analysis
Nature Communications 2022, vol. 13, issue 1
doi: 10.1038/s41467-022-30043-x
Antoine Régimbeau et al.
Contribution of genome‐scale metabolic modelling to niche theory
Ecology Letters 2022
doi: 10.1111/ele.13954
Théophile Grébert et al.
Diversity and Evolution of Pigment Types in MarineSynechococcusCyanobacteria
Genome Biology and Evolution 2022, vol. 14, issue 4
doi: 10.1093/gbe/evac035
C. M. Singleton et al.
The novel genus, ‘Candidatus Phosphoribacter’, previously identified as Tetrasphaera, is the dominant polyphosphate accumulating lineage in EBPR wastewater treatment plants worldwide
The ISME Journal 2022
doi: 10.1038/s41396-022-01212-z
Charles Pouchon et al.
ORTHOSKIM: In silico sequence capture from genomic and transcriptomic libraries for phylogenomic and barcoding applications
Molecular Ecology Resources 2022
doi: 10.1111/1755-0998.13584
Dounia Saleh et al.
Genome‐wide evolutionary response of European oaks during the Anthropocene
Evolution Letters 2022, vol. 6, issue 1
doi: 10.1002/evl3.269
Ali Janbain et al.
TopoFun: a machine learning method to improve the functional similarity of gene co-expression modules
NAR Genomics and Bioinformatics 2021, vol. 3, issue 4
doi: 10.1093/nargab/lqab103
Juliette Coursimault et al.
MYT1L-associated neurodevelopmental disorder: description of 40 new cases and literature review of clinical and molecular aspects
Human Genetics 2021, vol. 141, issue 1
doi: 10.1007/s00439-021-02383-z
Nathalie Lehmann et al.
Eoulsan 2: an efficient workflow manager for reproducible bulk, long-read and single-cell transcriptomics analyses
2021
doi: 10.1101/2021.10.13.464219
Nathalie Lehmann et al.
Eoulsan 2: an efficient workflow manager for reproducible bulk, long-read and single-cell transcriptomics analyses
2021
doi: 10.1101/2021.10.13.464219
Charles-Elie Rabier et al.
On the inference of complex phylogenetic networks by Markov Chain Monte-Carlo
PLOS Computational Biology 2021, vol. 17, issue 9
doi: 10.1371/journal.pcbi.1008380
Manoela C. Brandão et al.
Macroscale patterns of oceanic zooplankton composition and size structure
Scientific Reports 2021, vol. 11, issue 1
doi: 10.1038/s41598-021-94615-5
Benjamin Istace et al.
Sequencing and Chromosome-Scale Assembly of Plant Genomes, Brassica rapa as a Use Case
Biology 2021, vol. 10, issue 8
doi: 10.3390/biology10080732