Publications
Arsène-Ploetze F et al.
Adaptation in toxic environments: comparative genomics of loci carrying antibiotic resistance genes derived from acid mine drainage waters
Environmental Science and Pollution Research 2017 25(2)
doi: 10.1007/s11356-017-0535-8
Carradec Q et al.
A global ocean atlas of eukaryotic genes
Nature Communications 2018 9(1)
doi: 10.1038/s41467-017-02342-1
Decelle J et al.
Worldwide Occurrence and Activity of the Reef-Building Coral Symbiont Symbiodinium in the Open Ocean
Current Biology 2018 28(22)
doi: 10.1016/j.cub.2018.09.024
Duval C et al.
Phylogeny and salt-tolerance of freshwater Nostocales strains: Contribution to their systematics and evolution
Harmful Algae 2018 73
doi: 10.1016/j.hal.2018.01.008
Flegontova O et al.
Neobodonids are dominant kinetoplastids in the global ocean
Environmental Microbiology 2018 20(2)
doi: 10.1111/1462-2920.14034
Grébert T et al.
Light color acclimation is a key process in the global ocean distribution ofSynechococcus cyanobacteria
Proceedings of the National Academy of Sciences 2018 115(9)
doi: 10.1073/pnas.1717069115
Karimi B et al.
Biogeography of soil bacteria and archaea across France
Science Advances 2018 4(7)
doi: 10.1126/sciadv.aat1808
Leblanc K et al.
Nanoplanktonic diatoms are globally overlooked but play a role in spring blooms and carbon export
Nature Communications 2018 9(1)
doi: 10.1038/s41467-018-03376-9
Manzano-Marín A et al.
A Freeloader? The Highly Eroded Yet Large Genome of the Serratia symbiotica Symbiont of Cinara strobi
Genome Biology and Evolution 2018 10(9)
doi: 10.1093/gbe/evy173
Morard R et al.
Surface ocean metabarcoding confirms limited diversity in planktonic foraminifera but reveals unknown hyper-abundant lineages
Scientific Reports 2018 8(1)
doi: 10.1038/s41598-018-20833-z
Ziegler M et al.
Status of coral reefs of Upolu (Independent State of Samoa) in the South West Pacific and recommendations to promote resilience and recovery of coastal ecosystems
Marine Pollution Bulletin 2018 129(1)
doi: 10.1016/j.marpolbul.2018.02.044
Dickson LB et al.
Diverse laboratory colonies of Aedes aegypti harbor the same adult midgut bacterial microbiome
Parasites & Vectors 2018 11(1)
doi: 10.1186/s13071-018-2780-1
Fadlallah J et al.
Microbial ecology perturbation in human IgA deficiency
Science Translational Medicine 2018 10(439)
doi: 10.1126/scitranslmed.aan1217
Lanza VF et al.
In-depth resistome analysis by targeted metagenomics
Microbiome 2018 6(1)
doi: 10.1186/s40168-017-0387-y
Singh P et al.
Genotype-Environment Interaction Shapes the Microbial Assemblage in Grapevine’s Phyllosphere and Carposphere: An NGS Approach
Microorganisms 2018 6(4)
doi: 10.3390/microorganisms6040096
Mariac C et al.
Metabarcoding by capture using a single COI probe (MCSP) to identify and quantify fish species in ichthyoplankton swarms
PLOS ONE 2018 13(9)
doi: 10.1371/journal.pone.0202976
Salomez M et al.
Microbial communities in natural rubber coagula during maturation: impacts on technological properties of dry natural rubber
Journal of Applied Microbiology 2018 124(2)
doi: 10.1111/jam.13661
Collet A et al.
DNA barcoding post-larvae can improve the knowledge about fish biodiversity: an example from La Reunion, SW Indian Ocean
Mitochondrial DNA Part A 2017 29(6)
doi: 10.1080/24701394.2017.1383406
Kojadinovic-Sirinelli M et al.
Exploring the microbiome of the star freshwater diatom Asterionella formosa
in a laboratory context
Environmental Microbiology 2018 20(10)
doi: 10.1111/1462-2920.14337
Bouju-Albert A et al.
Influence of lactate and acetate removal on the microbiota of French fresh pork sausages
Food Microbiology 2018 76
doi: 10.1016/j.fm.2018.06.011
Poirier S et al.
Deciphering intra-species bacterial diversity of meat and seafood spoilage microbiota using gyrB amplicon sequencing: A comparative analysis with 16S rDNA V3-V4 amplicon sequencing
PLOS ONE 2018 13(9)
doi: 10.1371/journal.pone.0204629
Poirier S et al.
Detection of an amplification bias associated to Leuconostocaceae family with a universal primer routinely used for monitoring microbial community structures within food products
BMC Research Notes 2018 11(1)
doi: 10.1186/s13104-018-3908-2
Popova M et al.
Changes in the Rumen Microbiota of Cows in Response to Dietary Supplementation with Nitrate, Linseed, and Saponin Alone or in Combination
Applied and Environmental Microbiology 2018 85(4)
doi: 10.1128/AEM.02657-18
Guyomar C et al.
Multi-scale characterization of symbiont diversity in the pea aphid complex through metagenomic approaches
Microbiome 2018 6(1)
doi: 10.1186/s40168-018-0562-9
Zinger L et al.
Body size determines soil community assembly in a tropical forest
Molecular Ecology 2018 28(3)
doi: 10.1111/mec.14919
Segura A et al.
Factors Involved in the Persistence of a Shiga Toxin-Producing Escherichia coli O157:H7 Strain in Bovine Feces and Gastro-Intestinal Content
Frontiers in Microbiology 2018 9
doi: 10.3389/fmicb.2018.00375
Teyssier A et al.
Inside the guts of the city: Urban-induced alterations of the gut microbiota in a wild passerine
Science of The Total Environment 2018 612
doi: 10.1016/j.scitotenv.2017.09.035
Brener-Raffalli K et al.
Thermal regime and host clade, rather than geography, drive Symbiodinium and bacterial assemblages in the scleractinian coral Pocillopora damicornis sensu lato
Microbiome 2018 6(1)
doi: 10.1186/s40168-018-0423-6
Vannier N et al.
A microorganisms’ journey between plant generations
Microbiome 2018 6(1)
doi: 10.1186/s40168-018-0459-7
Darnaud M et al.
Enteric Delivery of Regenerating Family Member 3 alpha Alters~the Intestinal Microbiota and Controls Inflammation in~Mice With~Colitis
Gastroenterology 2018 154(4
doi: 10.1053/j.gastro.2017.11.003