Publications 2021

Hayley R Stoneman et al.
CRISpy-Pop: A Web Tool for Designing CRISPR/Cas9-Driven Genetic Modifications in Diverse Populations
G3 Genes|Genomes|Genetics 2020, vol. 10, issue 11
doi: 10.1534/g3.120.401498

Ngan Thi Phan et al.
Genome structure and content of the rice root‐knot nematode ( Meloidogyne graminicola )
Ecology and Evolution 2020, vol. 10, issue 20
doi: 10.1002/ece3.6680

Philippe Cubry et al.
Genome Wide Association Study Pinpoints Key Agronomic QTLs in African Rice Oryza glaberrima
Rice 2020, vol. 13, issue 1
doi: 10.1186/s12284-020-00424-1

Justine Foucher et al.
Common bean resistance to Xanthomonas is associated with upregulation of the salicylic acid pathway and downregulation of photosynthesis
BMC Genomics 2020, vol. 21, issue 1
doi: 10.1186/s12864-020-06972-6

Yann Dussert et al.
Identification of the First Oomycete Mating-type Locus Sequence in the Grapevine Downy Mildew Pathogen, Plasmopara viticola
Current Biology 2020, vol. 30, issue 20
doi: 10.1016/j.cub.2020.07.057

Marisol Domínguez et al.
The impact of transposable elements on tomato diversity
Nature Communications 2020, vol. 11, issue 1
doi: 10.1038/s41467-020-17874-2

Oriane Della-Negra et al.
Transformation of the recalcitrant pesticide chlordecone by Desulfovibrio sp.86 with a switch from ring-opening dechlorination to reductive sulfidation activity
Scientific Reports 2020, vol. 10, issue 1
doi: 10.1038/s41598-020-70124-9

Ming Wen et al.
Sex chromosome and sex locus characterization in goldfish, Carassius auratus (Linnaeus, 1758)
BMC Genomics 2020, vol. 21, issue 1
doi: 10.1186/s12864-020-06959-3

Sohaib Sarfraz et al.
Complete Genome Sequence of the Type Strain Pectobacterium punjabense SS95, Isolated from a Potato Plant with Blackleg Symptoms
Microbiology Resource Announcements 2020, vol. 9, issue 32
doi: 10.1128/mra.00420-20

Claude Rispe et al.
The genome sequence of the grape phylloxera provides insights into the evolution, adaptation, and invasion routes of an iconic pest
BMC Biology 2020, vol. 18, issue 1
doi: 10.1186/s12915-020-00820-5

Henry L. North et al.
The role of copy-number variation in the reinforcement of sexual isolation between the two European subspecies of the house mouse
Philosophical Transactions of the Royal Society B: Biological Sciences 2020, vol. 375, issue 1806
doi: 10.1098/rstb.2019.0540

Maxime Allioux et al.
Complete genome sequence of Thermosulfurimonas marina SU872T, an anaerobic thermophilic chemolithoautotrophic bacterium isolated from a shallow marine hydrothermal vent
Marine Genomics 2020, vol. 55
doi: 10.1016/j.margen.2020.100800

Mathilde Paris et al.
Near-chromosome level genome assembly of the fruit pest Drosophila suzukii using long-read sequencing
Scientific Reports 2020, vol. 10, issue 1
doi: 10.1038/s41598-020-67373-z

Fabiana Gámbaro et al.
Introductions and early spread of SARS-CoV-2 in France, 24 January to 23 March 2020
Eurosurveillance 2020, vol. 25, issue 26
doi: 10.2807/

Jelmer W Poelstra et al.
Cryptic Patterns of Speciation in Cryptic Primates: Microendemic Mouse Lemurs and the Multispecies Coalescent
Systematic Biology 2020, vol. 70, issue 2
doi: 10.1093/sysbio/syaa053

Florian Binetruy et al.
A novel Borrelia species, intermediate between Lyme disease and relapsing fever groups, in neotropical passerine-associated ticks
Scientific Reports 2020, vol. 10, issue 1
doi: 10.1038/s41598-020-66828-7

Olivier Quenez et al.
Detection of copy-number variations from NGS data using read depth information: a diagnostic performance evaluation
European Journal of Human Genetics 2020
doi: 10.1038/s41431-020-0672-2

Saïd Oulghazi et al.
Diversity of Pectobacteriaceae Species in Potato Growing Regions in Northern Morocco
Microorganisms 2020, vol. 8, issue 6
doi: 10.3390/microorganisms8060895

Ariane Kröll‐Hermi et al.
Proteasome subunit PSMC3 variants cause neurosensory syndrome combining deafness and cataract due to proteotoxic stress
EMBO Molecular Medicine 2020, vol. 12, issue 7
doi: 10.15252/emmm.201911861

Gabrielle Rudolf et al.
Exome sequencing in 57 patients with self-limited focal epilepsies of childhood with typical or atypical presentations suggests novel candidate genes
European Journal of Paediatric Neurology 2020, vol. 27
doi: 10.1016/j.ejpn.2020.05.003

Magali Hennion et al.
FORK-seq: replication landscape of the Saccharomyces cerevisiae genome by nanopore sequencing
Genome Biology 2020, vol. 21, issue 1
doi: 10.1186/s13059-020-02013-3

C. Dutech et al.
An easy and robust method for isolation and validation of single-nucleotide polymorphic markers from a first Erysiphe alphitoides draft genome
Mycological Progress 2020, vol. 19, issue 6
doi: 10.1007/s11557-020-01580-w

Marlène Roy et al.
Viral infection impacts transposable element transcript amounts inDrosophila
Proceedings of the National Academy of Sciences 2020, vol. 117, issue 22
doi: 10.1073/pnas.2006106117

Sabrina Saltaji et al.
Lactococcus lactis Diversity Revealed by Targeted Amplicon Sequencing of purR Gene, Metabolic Comparisons and Antimicrobial Properties in an Undefined Mixed Starter Culture Used for Soft-Cheese Manufacture
Foods 2020, vol. 9, issue 5
doi: 10.3390/foods9050622

A. Reghan Foley et al.
GGPS1 Mutations Cause Muscular Dystrophy/Hearing Loss/Ovarian Insufficiency Syndrome
Annals of Neurology 2020, vol. 88, issue 2
doi: 10.1002/ana.25772

Matteo De Chiara et al.
Discordant evolution of mitochondrial and nuclear yeast genomes at population level
BMC Biology 2020, vol. 18, issue 1
doi: 10.1186/s12915-020-00786-4

Sébastien Bridel et al.
Genetic diversity and population structure of Tenacibaculum maritimum, a serious bacterial pathogen of marine fish: from genome comparisons to high throughput MALDI-TOF typing
Veterinary Research 2020, vol. 51, issue 1
doi: 10.1186/s13567-020-00782-0

Jeff Rouïl et al.
The Protector within: Comparative Genomics of APSE Phages across Aphids Reveals Rampant Recombination and Diverse Toxin Arsenals
Genome Biology and Evolution 2020, vol. 12, issue 6
doi: 10.1093/gbe/evaa089

Stefan Kusch et al.
A Chromosome-Scale Genome Assembly Resource for Myriosclerotinia sulcatula Infecting Sedge Grass (Carex sp.)
Molecular Plant-Microbe Interactions® 2020, vol. 33, issue 7
doi: 10.1094/mpmi-03-20-0060-a

Christophe Plomion et al.
Oak genomics is proving its worth
New Phytologist 2020, vol. 226, issue 4
doi: 10.1111/nph.16560