Publications
Quentin Carradec et al.
A framework for in situ molecular characterization of coral holobionts using nanopore sequencing
Scientific Reports 2020, vol. 10, issue 1
doi: 10.1038/s41598-020-72589-0
Lydie Kerdraon et al.
Impact of a resistance gene against a fungal pathogen on the plant host residue microbiome: The case of the Leptosphaeria maculans–Brassica napus pathosystem
Molecular Plant Pathology 2020, vol. 21, issue 12
doi: 10.1111/mpp.12994
Dominique Arrouays et al.
Impacts of national scale digital soil mapping programs in France
Geoderma Regional 2020, vol. 23
doi: 10.1016/j.geodrs.2020.e00337
Hisashi Endo et al.
Biogeography of marine giant viruses reveals their interplay with eukaryotes and ecological functions
Nature Ecology & Evolution 2020, vol. 4, issue 12
doi: 10.1038/s41559-020-01288-w
Stevenn Volant et al.
SHAMAN: a user-friendly website for metataxonomic analysis from raw reads to statistical analysis
BMC Bioinformatics 2020, vol. 21, issue 1
doi: 10.1186/s12859-020-03666-4
Romuald Laso‐Jadart et al.
Investigating population‐scale allelic differential expression in wild populations of Oithona similis (Cyclopoida, Claus, 1866)
Ecology and Evolution 2020, vol. 10, issue 16
doi: 10.1002/ece3.6588
Marta Lourenço et al.
The Spatial Heterogeneity of the Gut Limits Predation and Fosters Coexistence of Bacteria and Bacteriophages
Cell Host & Microbe 2020, vol. 28, issue 3
doi: 10.1016/j.chom.2020.06.002
Yann Reynaud et al.
Cartography of Free-Living Amoebae in Soil in Guadeloupe (French West Indies) Using DNA Metabarcoding
Pathogens 2020, vol. 9, issue 6
doi: 10.3390/pathogens9060440
Battle Karimi et al.
Biogeography of soil microbial habitats across France
Global Ecology and Biogeography 2020, vol. 29, issue 8
doi: 10.1111/geb.13118
Charlotte Paës et al.
Early Introduction of Solid Feeds: Ingestion Level Matters More Than Prebiotic Supplementation for Shaping Gut Microbiota
Frontiers in Veterinary Science 2020, vol. 7
doi: 10.3389/fvets.2020.00261
Martin Beaumont et al.
Gut microbiota derived metabolites contribute to intestinal barrier maturation at the suckling-to-weaning transition
Gut Microbes 2020, vol. 11, issue 5
doi: 10.1080/19490976.2020.1747335
Francesca Romana Massacci et al.
Transport to the Slaughterhouse Affects the Salmonella Shedding and Modifies the Fecal Microbiota of Finishing Pigs
Animals 2020, vol. 10, issue 4
doi: 10.3390/ani10040676
Alexey Vorobev et al.
Transcriptome reconstruction and functional analysis of eukaryotic marine plankton communities via high-throughput metagenomics and metatranscriptomics
Genome Research 2020, vol. 30, issue 4
doi: 10.1101/gr.253070.119
Johanne Aubé et al.
Meta-omics Provides Insights into the Impact of Hydrocarbon Contamination on Microbial Mat Functioning
Microbial Ecology 2020, vol. 80, issue 2
doi: 10.1007/s00248-020-01493-x
Gabriel Gorsky et al.
Expanding Tara Oceans Protocols for Underway, Ecosystemic Sampling of the Ocean-Atmosphere Interface During Tara Pacific Expedition (2016–2018)
Frontiers in Marine Science 2019, vol. 6
doi: 10.3389/fmars.2019.00750
M Jobard et al.
Freshwater Perkinsea: diversity, ecology and genomic information
Journal of Plankton Research 2019, vol. 42, issue 1
doi: 10.1093/plankt/fbz068
Federico M. Ibarbalz et al.
Global Trends in Marine Plankton Diversity across Kingdoms of Life
Cell 2019, vol. 179, issue 5
doi: 10.1016/j.cell.2019.10.008
Guillem Salazar et al.
Gene Expression Changes and Community Turnover Differentially Shape the Global Ocean Metatranscriptome
Cell 2019, vol. 179, issue 5
doi: 10.1016/j.cell.2019.10.014
Frédéric Plewniak et al.
In situ metabolic activities of uncultivated Ferrovum sp. CARN8 evidenced by metatranscriptomic analysis
Research in Microbiology 2019, vol. 171, issue 1
doi: 10.1016/j.resmic.2019.09.008
L. Felipe Benites et al.
Single cell ecogenomics reveals mating types of individual cells and ssDNA viral infections in the smallest photosynthetic eukaryotes
Philosophical Transactions of the Royal Society B: Biological Sciences 2019, vol. 374, issue 1786
doi: 10.1098/rstb.2019.0089
Serge Planes et al.
The Tara Pacific expedition—A pan-ecosystemic approach of the “-omics” complexity of coral reef holobionts across the Pacific Ocean
PLOS Biology 2019, vol. 17, issue 9
doi: 10.1371/journal.pbio.3000483
Sophie Vergnes et al.
Phyllosphere Colonization by a Soil Streptomyces sp. Promotes Plant Defense Responses Against Fungal Infection
Molecular Plant-Microbe Interactions® 2019, vol. 33, issue 2
doi: 10.1094/mpmi-05-19-0142-r
Francesca Romana Massacci et al.
Host genotype and amoxicillin administration affect the incidence of diarrhoea and faecal microbiota of weaned piglets during a natural multiresistant ETEC infection
Journal of Animal Breeding and Genetics 2019, vol. 137, issue 1
doi: 10.1111/jbg.12432
Sandra Plancade et al.
Unraveling the effects of the gut microbiota composition and function on horse endurance physiology
Scientific Reports 2019, vol. 9, issue 1
doi: 10.1038/s41598-019-46118-7
Greta Busseni et al.
Meta-Omics Reveals Genetic Flexibility of Diatom Nitrogen Transporters in Response to Environmental Changes
Molecular Biology and Evolution 2019
doi: 10.1093/molbev/msz157
Marine Landa et al.
Sulfur metabolites that facilitate oceanic phytoplankton–bacteria carbon flux
The ISME Journal 2019, vol. 13, issue 10
doi: 10.1038/s41396-019-0455-3
Raphaël Enaud et al.
Intestinal Inflammation in Children with Cystic Fibrosis Is Associated with Crohn’s-Like Microbiota Disturbances
Journal of Clinical Medicine 2019, vol. 8, issue 5
doi: 10.3390/jcm8050645
Tehya Read et al.
Diversity and Co-occurrence Pattern Analysis of Cecal Microbiota Establishment at the Onset of Solid Feeding in Young Rabbits
Frontiers in Microbiology 2019, vol. 10
doi: 10.3389/fmicb.2019.00973
Thomas Dubois et al.
A microbiota-generated bile salt induces biofilm formation in Clostridium difficile
npj Biofilms and Microbiomes 2019, vol. 5, issue 1
doi: 10.1038/s41522-019-0087-4
Arsène-Ploetze F et al.
Adaptation in toxic environments: comparative genomics of loci carrying antibiotic resistance genes derived from acid mine drainage waters
Environmental Science and Pollution Research 2017 25(2)
doi: 10.1007/s11356-017-0535-8