Publications
Sébastien Riquier et al.
Long non-coding RNA exploration for mesenchymal stem cell characterisation
BMC Genomics 2021, vol. 22, issue 1
doi: 10.1186/s12864-020-07289-0
Miriam I. Brandt et al.
Bioinformatic pipelines combining denoising and clustering tools allow for more comprehensive prokaryotic and eukaryotic metabarcoding
Molecular Ecology Resources 2021
doi: 10.1111/1755-0998.13398
Léa Meunier et al.
DNA Methylation Signatures Reveal the Diversity of Processes Remodeling Hepatocellular Carcinoma Methylomes
Hepatology 2021, vol. 74, issue 2
doi: 10.1002/hep.31796
Caroline Vernette et al.
The Ocean barcode atlas: A web service to explore the biodiversity and biogeography of marine organisms
Molecular Ecology Resources 2021, vol. 21, issue 4
doi: 10.1111/1755-0998.13322
Alexis Hardy et al.
DNAModAnnot: a R toolbox for DNA modification filtering and annotation
Bioinformatics 2021, vol. 37, issue 17
doi: 10.1093/bioinformatics/btab032
Ozvan Bocher et al.
Extension of SKAT to multi-category phenotypes through a geometrical interpretation
European Journal of Human Genetics 2021 vol.29
doi: 10.1038/s41431-020-00792-8
Dimitra Sakoula et al.
Enrichment and physiological characterization of a novel comammox Nitrospira indicates ammonium inhibition of complete nitrification
The ISME Journal 2020
doi: 10.1038/s41396-020-00827-4
Agnès Barbance et al.
Genetic Analysis of Citrobacter sp.86 Reveals Involvement of Corrinoids in Chlordecone and Lindane Biotransformations
Frontiers in Microbiology 2020, vol. 11
doi: 10.3389/fmicb.2020.590061
Benjamin Istace et al.
BiSCoT: improving large eukaryotic genome assemblies with optical maps
PeerJ 2020, vol. 8
doi: 10.7717/peerj.10150
Christophe Djemiel et al.
BIOCOM-PIPE: a new user-friendly metabarcoding pipeline for the characterization of microbial diversity from 16S, 18S and 23S rRNA gene amplicons
BMC Bioinformatics 2020, vol. 21, issue 1
doi: 10.1186/s12859-020-03829-3
Sihem Guesmi et al.
Draft genome sequence of Promicromonospora panici sp. nov., a novel ionizing-radiation-resistant actinobacterium isolated from roots of the desert plant Panicum turgidum
Extremophiles 2020
doi: 10.1007/s00792-020-01207-8
Guillaume Martin et al.
Chromosome reciprocal translocations have accompanied subspecies evolution in bananas
The Plant Journal 2020, vol. 104, issue 6
doi: 10.1111/tpj.15031
Hayley R Stoneman et al.
CRISpy-Pop: A Web Tool for Designing CRISPR/Cas9-Driven Genetic Modifications in Diverse Populations
G3 Genes|Genomes|Genetics 2020, vol. 10, issue 11
doi: 10.1534/g3.120.401498
Thomas Baranek et al.
High Dimensional Single-Cell Analysis Reveals iNKT Cell Developmental Trajectories and Effector Fate Decision
Cell Reports 2020, vol. 32, issue 10
doi: 10.1016/j.celrep.2020.108116
Scheila G. Mucha et al.
Mycoplasma hyopneumoniae J elicits an antioxidant response and decreases the expression of ciliary genes in infected swine epithelial cells
Scientific Reports 2020, vol. 10, issue 1
doi: 10.1038/s41598-020-70040-y
Marisol Domínguez et al.
The impact of transposable elements on tomato diversity
Nature Communications 2020, vol. 11, issue 1
doi: 10.1038/s41467-020-17874-2
Albin Teulet et al.
Phylogenetic distribution and evolutionary dynamics of nod and T3SS genes in the genus Bradyrhizobium
Microbial Genomics 2020, vol. 6, issue 9
doi: 10.1099/mgen.0.000407
Stevenn Volant et al.
SHAMAN: a user-friendly website for metataxonomic analysis from raw reads to statistical analysis
BMC Bioinformatics 2020, vol. 21, issue 1
doi: 10.1186/s12859-020-03666-4
Mourdas Mohamed et al.
A Transposon Story: From TE Content to TE Dynamic Invasion of Drosophila Genomes Using the Single-Molecule Sequencing Technology from Oxford Nanopore
Cells 2020, vol. 9, issue 8
doi: 10.3390/cells9081776
Elodie Gazanion et al.
Genome wide distribution of G-quadruplexes and their impact on gene expression in malaria parasites
PLOS Genetics 2020, vol. 16, issue 7
doi: 10.1371/journal.pgen.1008917
Olivier Quenez et al.
Detection of copy-number variations from NGS data using read depth information: a diagnostic performance evaluation
European Journal of Human Genetics 2021 vol.29
doi: 10.1038/s41431-020-0672-2
Magali Hennion et al.
FORK-seq: replication landscape of the Saccharomyces cerevisiae genome by nanopore sequencing
Genome Biology 2020, vol. 21, issue 1
doi: 10.1186/s13059-020-02013-3
C. Dutech et al.
An easy and robust method for isolation and validation of single-nucleotide polymorphic markers from a first Erysiphe alphitoides draft genome
Mycological Progress 2020, vol. 19, issue 6
doi: 10.1007/s11557-020-01580-w
Marlène Roy et al.
Viral infection impacts transposable element transcript amounts inDrosophila
Proceedings of the National Academy of Sciences 2020, vol. 117, issue 22
doi: 10.1073/pnas.2006106117
Sabrina Saltaji et al.
Lactococcus lactis Diversity Revealed by Targeted Amplicon Sequencing of purR Gene, Metabolic Comparisons and Antimicrobial Properties in an Undefined Mixed Starter Culture Used for Soft-Cheese Manufacture
Foods 2020, vol. 9, issue 5
doi: 10.3390/foods9050622
Frédéric Peyrusson et al.
Intracellular Staphylococcus aureus persisters upon antibiotic exposure
Nature Communications 2020, vol. 11, issue 1
doi: 10.1038/s41467-020-15966-7
Waradon Sungnak et al.
SARS-CoV-2 entry factors are highly expressed in nasal epithelial cells together with innate immune genes
Nature Medicine 2020, vol. 26, issue 5
doi: 10.1038/s41591-020-0868-6
Yuvia A. Pérez-Rico et al.
Demarcation of Topologically Associating Domains Is Uncoupled from Enriched CTCF Binding in Developing Zebrafish
iScience 2020, vol. 23, issue 5
doi: 10.1016/j.isci.2020.101046
Lucrecia C. Terán et al.
Nucleotide sequence and analysis of pRC12 and pRC18, two theta-replicating plasmids harbored by Lactobacillus curvatus CRL 705
PLOS ONE 2020, vol. 15, issue 4
doi: 10.1371/journal.pone.0230857
Adam A. Caparco et al.
Metagenomic Mining for Amine Dehydrogenase Discovery
Advanced Synthesis & Catalysis 2020, vol. 362, issue 12
doi: 10.1002/adsc.202000094