Bioinformatics

Viricel C et al.
Cost function network-based design of protein–protein interactions: predicting changes in binding affinity
Bioinformatics 2018 34(15)
doi: 10.1093/bioinformatics/bty092

Varet H et al.
checkMyIndex: a web-based R/Shiny interface for choosing compatible sequencing indexes
Bioinformatics 2018 35(5)
doi: 10.1093/bioinformatics/bty706

Clemente F et al.
Inferring sex-specific demographic history from SNP data
PLOS Genetics 2018 14(1)
doi: 10.1371/journal.pgen.1007191

Claverie JM et al.
Mimiviridae: An Expanding Family of Highly Diverse Large dsDNA Viruses Infecting a Wide Phylogenetic Range of Aquatic Eukaryotes
Viruses 2018 10(9)
doi: 10.3390/v10090506

Chikhi L et al.
The IICR (inverse instantaneous coalescence rate) as a summary of genomic diversity: insights into demographic inference and model choice
Heredity 2017 120(1)
doi: 10.1038/s41437-017-0005-6

Lang D et al.
The Physcomitrella patens
chromosome-scale assembly reveals moss genome structure and evolution
The Plant Journal 2018 93(3)
doi: 10.1111/tpj.13801

Fumey J et al.
Evidence for late Pleistocene origin of Astyanax mexicanus cavefish
BMC Evolutionary Biology 2018 18(1)
doi: 10.1186/s12862-018-1156-7

Miyauchi S et al.
Integrative visual omics of the white-rot fungus Polyporus brumalis exposes the biotechnological potential of its oxidative enzymes for delignifying raw plant biomass
Biotechnology for Biofuels 2018 11(1)
doi: 10.1186/s13068-018-1198-5

Cabanettes F et al.
D-GENIES: dot plot large genomes in an interactive, efficient and simple way
PeerJ 2018 6
doi: 10.7717/peerj.4958

Meng A et al.
A de novo approach to disentangle partner identity and function in holobiont systems
Microbiome 2018 6(1)
doi: 10.1186/s40168-018-0481-9