Bioinformatics Platform of Montpellier
Expertise
- Qualitative transcriptome analysis using RNA-Seq or Digital Gene Expression (SAGE)
- De novo transcriptome assembly (RNA-Seq)
- Hybrid correction of PacBio (Pacific BioSciences) reads for DNA-Seq or RNA-Seq
- Genomic analysis: search for mutations, insertion deletions, rearrangements
- Mapping of genomic or transcriptome reads
Equipments
- Compute server 124 GB of memory, 8 cores
- Disk bay 30 TB
La plateforme est servie par 7 ingénieurs : 4 biologistes moléculaires et 3 bio-informaticiens.
Main achievments
- Software : LoRDEC, CRAC, MPSCAN, GS_check, PermutMatrix
- genomics project Ostreococcus tauri
- transcriptome analysis in Acute Myeloid Leukaemia
- transcriptome analysis in human embryonic stem cells
Labels
IBISA
RENABI
Cancéropôle Grand Sud Ouest
Platform Managment
Eric Rivals
Laboratoire d’Informatique, de Robotique et de Microélectronique de Montpellier (LIRMM)
Institut de Biologie Computationnelle (IBC)
CNRS, Université de Montpellier 2
Contacts
Eric Rivals : atgc-hts@lirmm.fr
tel : 04 67 41 86 64
For further information
